mRNA_F-serratus_M_contig1316.2356.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1316.2356.1
Unique NamemRNA_F-serratus_M_contig1316.2356.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1316.2356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1316contigF-serratus_M_contig1316:261658..262256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size599
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1316.2356.1prot_F-serratus_M_contig1316.2356.1Fucus serratus malepolypeptideF-serratus_M_contig1316 261714..262073 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929275.1959846-UTR-F-serratus_M_contig1316:261657..2617131622929275.1959846-UTR-F-serratus_M_contig1316:261657..261713Fucus serratus maleUTRF-serratus_M_contig1316 261658..261713 +
1690962779.8655076-UTR-F-serratus_M_contig1316:261657..2617131690962779.8655076-UTR-F-serratus_M_contig1316:261657..261713Fucus serratus maleUTRF-serratus_M_contig1316 261658..261713 +
1622929275.2226043-UTR-F-serratus_M_contig1316:262073..2622561622929275.2226043-UTR-F-serratus_M_contig1316:262073..262256Fucus serratus maleUTRF-serratus_M_contig1316 262074..262256 +
1690962779.8827128-UTR-F-serratus_M_contig1316:262073..2622561690962779.8827128-UTR-F-serratus_M_contig1316:262073..262256Fucus serratus maleUTRF-serratus_M_contig1316 262074..262256 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929275.208941-CDS-F-serratus_M_contig1316:261713..2620731622929275.208941-CDS-F-serratus_M_contig1316:261713..262073Fucus serratus maleCDSF-serratus_M_contig1316 261714..262073 +
1690962779.8744712-CDS-F-serratus_M_contig1316:261713..2620731690962779.8744712-CDS-F-serratus_M_contig1316:261713..262073Fucus serratus maleCDSF-serratus_M_contig1316 261714..262073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1316.2356.1

>prot_F-serratus_M_contig1316.2356.1 ID=prot_F-serratus_M_contig1316.2356.1|Name=mRNA_F-serratus_M_contig1316.2356.1|organism=Fucus serratus male|type=polypeptide|length=120bp
MSTGRFIIHALWTSGLTRIKQFIPRAHKQNKKICLCITITPSKQMVNTRI
AHQDQTHVRMLVTKPLTDLPVAASPLPCSGVNVVQSHKYLVPHAGSLRYS
PRHHPRNRSHTHVVHPIEP*
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mRNA from alignment at F-serratus_M_contig1316:261658..262256+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1316.2356.1 ID=mRNA_F-serratus_M_contig1316.2356.1|Name=mRNA_F-serratus_M_contig1316.2356.1|organism=Fucus serratus male|type=mRNA|length=599bp|location=Sequence derived from alignment at F-serratus_M_contig1316:261658..262256+ (Fucus serratus male)
CCAACGAAAAGTTGACTTGTTACGCCAACTACCAAGCCAACGCAGTTCAC
GCCCTGATGTCAACTGGGCGCTTCATAATCCATGCGCTTTGGACATCTGG
TCTGACCCGCATTAAACAGTTTATTCCAAGAGCCCATAAACAAAACAAAA
AAATCTGTCTTTGCATAACCATAACGCCAAGCAAACAAATGGTTAACACG
AGGATTGCACACCAGGATCAAACGCATGTACGGATGTTGGTCACTAAGCC
ATTGACCGATTTGCCCGTTGCGGCTTCACCATTGCCTTGCTCCGGTGTCA
ACGTCGTACAAAGCCACAAGTACTTAGTTCCACATGCAGGGTCTTTGCGA
TACTCGCCACGCCATCACCCCCGTAACAGGAGTCACACTCATGTGGTTCA
CCCGATTGAGCCTTGAGGCGAGGTTCCGATCTCTTTCTCGCCGTAACCGC
TGCCTGGCCGACACCTTTACCTTTACCTCGGGCAGCGCACTCACGCCCAG
CGAGTGTGCGGTGCAGAGTCCCGACAAGCTCCTCCCACGCAAGCTGTCCG
CATCGCAAGCCCCAGCATTTAGAACTAAACAAGCGATTTCATAAATGAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1316:261658..262256+

>mRNA_F-serratus_M_contig1316.2356.1 ID=mRNA_F-serratus_M_contig1316.2356.1|Name=mRNA_F-serratus_M_contig1316.2356.1|organism=Fucus serratus male|type=CDS|length=720bp|location=Sequence derived from alignment at F-serratus_M_contig1316:261658..262256+ (Fucus serratus male)
ATGTCAACTGGGCGCTTCATAATCCATGCGCTTTGGACATCTGGTCTGAC
CCGCATTAAACAGTTTATTCCAAGAGCCCATAAACAAAACAAAAAAATCT
GTCTTTGCATAACCATAACGCCAAGCAAACAAATGGTTAACACGAGGATT
GCACACCAGGATCAAACGCATGTACGGATGTTGGTCACTAAGCCATTGAC
CGATTTGCCCGTTGCGGCTTCACCATTGCCTTGCTCCGGTGTCAACGTCG
TACAAAGCCACAAGTACTTAGTTCCACATGCAGGGTCTTTGCGATACTCG
CCACGCCATCACCCCCGTAACAGGAGTCACACTCATGTGGTTCACCCGAT
TGAGCCTTGAATGTCAACTGGGCGCTTCATAATCCATGCGCTTTGGACAT
CTGGTCTGACCCGCATTAAACAGTTTATTCCAAGAGCCCATAAACAAAAC
AAAAAAATCTGTCTTTGCATAACCATAACGCCAAGCAAACAAATGGTTAA
CACGAGGATTGCACACCAGGATCAAACGCATGTACGGATGTTGGTCACTA
AGCCATTGACCGATTTGCCCGTTGCGGCTTCACCATTGCCTTGCTCCGGT
GTCAACGTCGTACAAAGCCACAAGTACTTAGTTCCACATGCAGGGTCTTT
GCGATACTCGCCACGCCATCACCCCCGTAACAGGAGTCACACTCATGTGG
TTCACCCGATTGAGCCTTGA
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