mRNA_F-serratus_M_contig1316.2355.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1316.2355.1 vs. uniprot
Match: D7FRT1_ECTSI (Long-chain acyl-CoA synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT1_ECTSI) HSP 1 Score: 325 bits (833), Expect = 3.230e-95 Identity = 168/395 (42.53%), Postives = 223/395 (56.46%), Query Frame = 1
Query: 241 IRHLSNWIFAEEIGCDWATPD-WGRRLEPGDDNAVLYCHKVATTEEIGQAMLRGKADE----IRHCSTINWMEFFQLDVPSVGRPQQGTFRVIESSFHETDALVDLRHEVQYSRDKVLPWDDVLFTSDATFAGQQLLA-IGSWDETRRAIVRTVLQEARFNFHRHPRRWYDEGASSCKFDPKSFNFAVHVRMGDRREFQDGSMQYLELLERFMIAVSSAVTARGMMQPTFHVFSETLAPCPSEDTRLFNEFPAWPIEADEITGCWEAQTPEDCPEKRAGAKLCNPVRSGVFFVEEKPITLHVGHDVGNAMSCMIQSDGVMMGCSAFGQVAGLLT-EGIRFFSMQCDGTNTPDQLKAMPPLAIAERGHLWVPISGSWRDPVLVSTEILDGALDTLL 1404
+RHL+ IFAEE+GCDW TP WG + A +YCH AT +E + DE + CS +NW E+F L+ SV P TFRV+E+ L E + L WD + A LA +GSWD +R +VR VL++ R NFH+ PR WY++ C ++ NFA+HVRMGDRRE + + +Y LLE FM V+ AV R P FHVFSE L PCP + F EFP WP+E D+++ C +D P R F VE +P+ LH+G + A+SCM+ +DG++MGCS FGQ+AG+L +GI FFS +C G P Q K +PPLA+AERG +WVPI+GSWRDPVL + + LD LL
Sbjct: 3 MRHLAAKIFAEEVGCDWLTPSQWGMPVAGDGSGASVYCHSAATYDEQRRGFGNATKDEAEIMVHRCSVVNWPEYFNLNASSVELPANCTFRVVEADTSRNHDLEMALKETDANGFDNLGWDRLKIVLRQPHASSNFLASLGSWDGWKREVVRKVLRQFRENFHQSPRPWYND-EPECGYEESELNFALHVRMGDRRELEGVTPEYFSLLEGFMATVTQAVVEREQAAPMFHVFSEALYPCPFPENATFTEFPFWPVERDQVSVCPRNAAEQDGPASRPDT----------FRVEGRPVLLHLGRNAAEALSCMVHADGLLMGCSTFGQLAGVLNGDGISFFSTECGGHGAPLQSKMIPPLAVAERGRMWVPIAGSWRDPVLRAKHVFSAVLDELL 386
BLAST of mRNA_F-serratus_M_contig1316.2355.1 vs. uniprot
Match: A0A6H5JW68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW68_9PHAE) HSP 1 Score: 283 bits (723), Expect = 2.900e-89 Identity = 138/275 (50.18%), Postives = 180/275 (65.45%), Query Frame = 1
Query: 583 WDDVLFTSDATFAGQQLLAIGSWDETRRAIVRTVLQEARFNFHRHPRRWYDEGASSCKFDPKSFNFAVHVRMGDRRE-FQDGSMQYLELLERFMIAVSSAVTARGMMQPTFHVFSETLAPCPSEDTRLFNEFPAWPIEADEITGCWEAQTPEDCPEKRAGAKLCNPVRSGVFFVEEKPITLHVGHDVGNAMSCMIQSDGVMMGCSAFGQVAGLLTEGIRFFSMQCDGTNTPDQLKAMPPLAIAERGHLWVPISGSWRDPVLVSTEILDGALDTLL 1404
W+ L + A + A+GSW+ +R VRTVL + +FH PR W + C F + A+HVR+GDR++ D S Y + LE FM V+SA ARG P FH+FSET + CPS + F EFP WP+E D+++ C EA TPE+CPEK AGA CNP RSG+F V+ + + LHVG DV N +SCM ++GV+MGCS FGQVAG+L++GIRFFS +C G T Q K +PP+AIA RGH+WVP+SGSW DPV+ S IL +LD LL
Sbjct: 15 WNQWLLMMNLMTAPRYFSAVGSWNARKREAVRTVLHTFKQSFHTFPRPW-NNIQPECAFSQSKLDIAIHVRLGDRKDSLNDDS--YFDYLEDFMETVASAAIARGQDHPVFHIFSETHSRCPSAENGAFEEFPKWPVEMDQVSTCMEATTPEECPEKDAGAPSCNPTRSGIFAVDGREMNLHVGLDVQNDLSCMANANGVLMGCSTFGQVAGVLSKGIRFFSTECAGWRTTIQYKLIPPMAIAGRGHMWVPVSGSWHDPVIASESILGASLDLLL 286
BLAST of mRNA_F-serratus_M_contig1316.2355.1 vs. uniprot
Match: D7G5J8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J8_ECTSI) HSP 1 Score: 260 bits (664), Expect = 1.430e-81 Identity = 124/203 (61.08%), Postives = 146/203 (71.92%), Query Frame = 1
Query: 796 MGDRREFQDGSMQYLELLERFMIAVSSAVTARGMMQPTFHVFSETLAPCPSEDTRLFNEFPAWPIEADEITGCWEAQTPEDCPEKRAGAKLCNPVRSGVFFVEEKPITLHVGHDVGNAMSCMIQSDGVMMGCSAFGQVAGLLTEGIRFFSMQCDGTNTPDQLKAMPPLAIAERGHLWVPISGSWRDPVLVSTEILDGALDTLL 1404
MGDRR F DGS+QY +E M V+ RG+ +P FHVFSETL+PCPS T LF+EFP WP+E D+I C A TP DCPEK+AG C P R+G+F + +K I LHVG DV N MSCMIQ+DGV+MGCS FGQ+AGLLT GI FS +C G TP Q +++PPLAIAE+GHLWVPI GSW DPVL S I ALDTLL
Sbjct: 1 MGDRRAFYDGSLQYFHNVELIMETVADEFRERGLPEPLFHVFSETLSPCPSTVTGLFDEFPIWPVELDKIEECLAAATPIDCPEKQAGT-FCTPKRAGIFRIRDKSIVLHVGSDVQNEMSCMIQADGVLMGCSTFGQIAGLLTRGISLFSTRCSGEATPHQYRSIPPLAIAEKGHLWVPIEGSWHDPVLTSRSIFSAALDTLL 202
BLAST of mRNA_F-serratus_M_contig1316.2355.1 vs. uniprot
Match: A0A6H5L814_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L814_9PHAE) HSP 1 Score: 212 bits (539), Expect = 2.760e-62 Identity = 108/235 (45.96%), Postives = 140/235 (59.57%), Query Frame = 1
Query: 724 RWYDEGASSCKFDPKSFNFAVHVRMGDRREFQDGSMQYLELLERFMIAVSSAVTARGMMQPTFHVFSETLAPCPSEDTRLFNEFPAWPIEADEITGCWEAQTPEDCPEKRAGAKLCNPV-------RSGVFFVEEKPITLHVGHDVGNAMSCMIQSDGVMMGCSAFGQVAGLLT-EGIRFFSMQCDGTNTPDQLKAMPPLAIAERGHLWVPISGSWRDPVLVSTEILDGALDTLL 1404
R+ DE C ++ NFA+HVRMGDRRE + + +Y LLE FM V+ AV R P FHVFSE L PCPS + F EFP WP+E D++ ++ L N R G F VE +P+ LH+G + A+SCM+ +DG++MGCS FGQ+AG+L + I FFS +C G P Q K +PPLA+AERG +WVPI+GSWRDPVL + I ALD LL
Sbjct: 13 RYNDE--PGCGYEESQLNFALHVRMGDRRELEGVTPEYFSLLEDFMATVTQAVVEREQAAPMFHVFSEALYPCPSPENATFTEFPLWPVERDQVDLNVSLHRLFSLSNEKVSVCLRNAAEQGAPASRKGTFRVEGRPVLLHLGRNAAEALSCMVHADGLLMGCSTFGQLAGVLNGDRISFFSTECGGHGAPLQSKMIPPLAVAERGRMWVPIAGSWRDPVLRAKHIFSAALDALL 245
BLAST of mRNA_F-serratus_M_contig1316.2355.1 vs. uniprot
Match: A0A6H5JXM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXM8_9PHAE) HSP 1 Score: 176 bits (445), Expect = 3.300e-49 Identity = 84/179 (46.93%), Postives = 112/179 (62.57%), Query Frame = 1
Query: 859 MIAVSSAVTARGMMQPTFHVFSETLAPCPSEDTRLFNEFPAWPIEADEITGCWEAQTPEDCPEKRAGAKLCNPVRSGVFFVEEKPITLHVGHDVGNAMSCMIQSDGVMMGCSAFGQVAGLLTEGIRFFSMQCDGTNTPDQLKAMPPLAIAERGHLWVPISGSWRDPVLVSTEILDGALD 1395
M ++ V G P FH+FSET PCPS + +F EFP W + DEI C A+ P+DCPEK+AG C P +G+F V +PI +VG +V ++ MI +D V+MGCSAFGQ+AG+L++GI+ FS C+G T +Q K P AIAE G LWVP+ GSW DP L + I A +
Sbjct: 1 MKVIAKEVHGLGQRTPLFHIFSETELPCPSLEDGVFPEFPEWAVAPDEIRECHSARPPDDCPEKQAGGDFCYPHHTGIFRVPGEPIIFNVGGNVVQSLMSMISADAVVMGCSAFGQLAGILSKGIKLFSTGCEGNMTWEQNKMAPLFAIAELGELWVPLEGSWADPTLTNVGIFRKAFE 179
BLAST of mRNA_F-serratus_M_contig1316.2355.1 vs. uniprot
Match: D7G5J9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J9_ECTSI) HSP 1 Score: 167 bits (422), Expect = 8.600e-45 Identity = 74/172 (43.02%), Postives = 104/172 (60.47%), Query Frame = 1
Query: 1 VGPEEACSDFIRDRKYPGSSWRPKDCMDVWERFVRSVPEHLRRRPPSFDTLRDTTDKLQQAGSSCLVASIPAAAGVGTSMIRHLSNWIFAEEIGCDWATPDWGRRLEPG-DDNAVLYCHKVATTEEIGQAMLRGKADEIRHCSTINWMEFFQLDVPSVGRPQQGTFRVIESS 513
V P +AC+DF + Y GS W P+DC+ VW F +V E R P D DT ++L++AGS CLV SIP G G++ IRHL+ WIF+ E+GCDW TPDWG++ G AV+YCH+ T E+ + + + +R C I+W+ +FQ D+PSV P V+E+S
Sbjct: 98 VEPADACADFAPGQ-YTGSGWTPEDCLHVWNDFNDTVWEQFHPRMPDADLWIDTAEELRRAGSPCLVGSIPNGDGAGSTTIRHLATWIFSREMGCDWVTPDWGKKFVGGRSGTAVMYCHRAGTAAEMDPSKTKEELKAMRRCVIIDWLSYFQFDIPSVPSPVHEKLMVVEAS 268
BLAST of mRNA_F-serratus_M_contig1316.2355.1 vs. uniprot
Match: A0A6H5JJ94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ94_9PHAE) HSP 1 Score: 116 bits (291), Expect = 1.190e-27 Identity = 61/136 (44.85%), Postives = 76/136 (55.88%), Query Frame = 1
Query: 997 DEITGCWEAQTPEDCPEKRAGAKLCNPVRSGVFFVEEKPITLHVGHDVGNAMSCMIQSDGVMMGCSAFGQVAGLLTEGIRFFSMQCDGTNTPDQLKAMPPLAIAERGHLWVPISGSWRDPVLVSTEILDGALDTLL 1404
D+I C A TP+DCPEK+AG C P R+G+F + K I LH+G DV N MSC+I++DGV+M +++PPL IAE+GHLWVPI GSW DPV S I ALDTLL
Sbjct: 20 DQIEECLAATTPQDCPEKQAGT-FCTPKRAGIFRIRYKSIVLHMGSDVQNEMSCIIEADGVLM--------------------------------RSIPPLTIAEKGHLWVPIEGSWHDPVWSSRSIFSAALDTLL 122 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1316.2355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1316.2355.1 >prot_F-serratus_M_contig1316.2355.1 ID=prot_F-serratus_M_contig1316.2355.1|Name=mRNA_F-serratus_M_contig1316.2355.1|organism=Fucus serratus male|type=polypeptide|length=468bp VGPEEACSDFIRDRKYPGSSWRPKDCMDVWERFVRSVPEHLRRRPPSFDTback to top mRNA from alignment at F-serratus_M_contig1316:211140..214818- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1316.2355.1 ID=mRNA_F-serratus_M_contig1316.2355.1|Name=mRNA_F-serratus_M_contig1316.2355.1|organism=Fucus serratus male|type=mRNA|length=3679bp|location=Sequence derived from alignment at F-serratus_M_contig1316:211140..214818- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1316:211140..214818- >mRNA_F-serratus_M_contig1316.2355.1 ID=mRNA_F-serratus_M_contig1316.2355.1|Name=mRNA_F-serratus_M_contig1316.2355.1|organism=Fucus serratus male|type=CDS|length=2808bp|location=Sequence derived from alignment at F-serratus_M_contig1316:211140..214818- (Fucus serratus male)back to top |