mRNA_F-serratus_M_contig131.2335.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig131.2335.1 vs. uniprot
Match: D8LME0_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME0_ECTSI) HSP 1 Score: 577 bits (1486), Expect = 9.410e-198 Identity = 285/452 (63.05%), Postives = 350/452 (77.43%), Query Frame = 1
Query: 1 GYVVDST-VALDNPFDDAAYNPASSIAVLPDGSGIYVGGERGGLVFLSKTQGDGSLTLANAWSTSKFVKALQSVEQIIVSPDGTKLVTLGAKGPDLGTFGLFSIASDGALDLLQESSHRGIVRAGFPPTSSRDLYVIDDDRNALTHYEYTYDDGRFVDSQTLGGFSCMYGLGIAPNGLNVYVTDDCLHVVTNFKRDTGTGSLVFQDELEGSPLNGDGLGCIKSLSFAASSVWAVGLDSCDDVLSIISRDPDTGTLTPTSKVKPRNPNGNNINMDKTWNLLVVSDGSGDIYVADWADQYILWVRADFGVGGDGSVLGTAWYPVDFMPSTLAISPNLDHIYASNKENAVWRGGVLSREATPSAEPHLLSEGSSGGTTVLAVVLSLSVLGAVVVVGVVAKYIAQKRTIAKYSDEEETLRGMLKTNPNNVVAHNNLGVLMETVHKDYKEAEFHYNE 1353
GY V+ T +L+NPFDD ++NPAS+I V DG+G+YVGGE GGL+ L+++ DGSLT+ AW+ S F +ALQSVEQI+V+PDG+KL+TLG++G GTFG+FSI++DG L LLQE HRGI+RAGFP +SSRDLY IDDDR+ LTHY TYD RFV SQT+GGF+C+YGLG+AP+G NVYV DDCL+ VTNF+RD TGSL FQDEL G P NGDGLGC+KSLSF W VGLDSCDDV+SI+ RD DTGTLTPT+ + NP+GN IN+DKTW+ LVVSDG GDIYVADW+D ILWVRADFGVGGDGSV+ T W+ + F PSTL SP+L +Y +NKEN VW GG R A P+ P G+S LAV LS+S++ A+V+ GV AK+I +KR I+ Y+ EEETLR L+ NPN+ VAHNNLG LMETV+KD+ EAE HY+E
Sbjct: 43 GYSVNLTGSSLNNPFDDTSFNPASAIGVSADGTGVYVGGELGGLIHLARSPEDGSLTMTRAWAASDFDEALQSVEQIVVTPDGSKLITLGSRGLGRGTFGVFSISADGDLQLLQEDDHRGIIRAGFPDSSSRDLYAIDDDRSVLTHY--TYDGSRFVVSQTVGGFTCLYGLGVAPDGANVYVADDCLYTVTNFRRDPDTGSLTFQDELSGDPRNGDGLGCLKSLSFTEDGAWVVGLDSCDDVISILKRDLDTGTLTPTTLINTDNPDGNTINIDKTWSALVVSDGLGDIYVADWSDSKILWVRADFGVGGDGSVISTNWFSLSFKPSTLIASPDLQTVYVANKENDVWEGGAYPRVAVPT--PDSDGSGTSAVNVTLAVALSVSLVAAIVIAGVAAKFIQRKRNISMYAGEEETLRAALEANPNDAVAHNNLGYLMETVYKDFAEAEAHYSE 490
BLAST of mRNA_F-serratus_M_contig131.2335.1 vs. uniprot
Match: A0A835ZFA9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFA9_9STRA) HSP 1 Score: 158 bits (399), Expect = 1.110e-37 Identity = 136/460 (29.57%), Postives = 206/460 (44.78%), Query Frame = 1
Query: 34 NPFDDAAYNPASSIAVLPDGSGIYVGGERGGLVFLSKTQGDGSLTLANAWSTSKFVKALQSVEQIIVSPDGTKLVTLGAKGPDLGTFGLFSIASDGALDLLQESSHRGIVRAGFPPTSSRDLYVIDDDRNALTHYEYTYDDGRFVDSQTLG--GFSCMYGLGIAPNGLNVYVTDDCLHVVTNFKRDTGTGSLVFQDE---LEGSP--LNGDGLGCIKSLSFAASSVWAVGLDSCDDVLSIISRDPDTGTLTPTSKVKPRNPNGNNINMDKTWNLLVVSDGSGDIYVADWADQYILWVRADFGVGGDGSVLGTAWYPVDFMPSTLAISPNLDHIYASNKENAV----------WRGGVLSREATPSAEPHLLSEGSSGGTTVLAVVLSLSVLGAVVVVGVVAK-----YIAQKRTIAKYSDEEETLRGMLKTNPNNVVAHNNLGVLMETVHKDYKEAEFHY 1347
NPF + AS+IAV DG +YVGG++GGL +L++ G L W S F AL++V+ + +S D +V G K G+ G+FS+ DG LL + I A F P S+ D Y ID L + Y+ D F Q + G S L I+P+GLNVYV D NF RD TG LV + L+G P + DG+G S++F++S+ +A L++ ++++SR G L SK +G + LL+ SD D+YV + I W++ D ++ W+ P L +H+YA+ W+G +RE P + + TT SV +++G A IA +++ EEE L+ +PN+ +AHNN G ++ +Y AE HY
Sbjct: 47 NPFFSKT-SAASAIAVSRDGRNVYVGGDKGGLAWLTRDVATGDLRYQQGWPASAFTTALKAVQHVSISEDDGYMVICGNKADPYGSLGIFSLDVDGTPSLLYQEEIPDIQHALFAPGSATDFYTIDQTNMELRLWSYSSADHGFSVQQAIALEGPS-PDALAISPDGLNVYVHDSSSAKNFNFARDPATG-LVGESPASTLQGDPNAVGSDGIGHWSSMAFSSSAPFAFALETLVGQVTVLSRAVGNGALAVLSKFPVAYDDGAAVACRADAPLLLASDDDVDLYVLGESRGQIGWLQFD---AATHALHANGWFVTGSRPRQLIADAAYEHVYATFAATNTXXXXXXXXXKWKGAHFNREPAVPPTPAPTTPQPTSATT-------YSVESQTLLLGESADTFNLMLIAVHKSVELAQAEEEKFILALQASPNDALAHNNYGHFLQHKRSNYAGAERHY 493 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig131.2335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig131.2335.1 >prot_F-serratus_M_contig131.2335.1 ID=prot_F-serratus_M_contig131.2335.1|Name=mRNA_F-serratus_M_contig131.2335.1|organism=Fucus serratus male|type=polypeptide|length=590bp GYVVDSTVALDNPFDDAAYNPASSIAVLPDGSGIYVGGERGGLVFLSKTQback to top mRNA from alignment at F-serratus_M_contig131:738590..757030+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig131.2335.1 ID=mRNA_F-serratus_M_contig131.2335.1|Name=mRNA_F-serratus_M_contig131.2335.1|organism=Fucus serratus male|type=mRNA|length=18441bp|location=Sequence derived from alignment at F-serratus_M_contig131:738590..757030+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig131:738590..757030+ >mRNA_F-serratus_M_contig131.2335.1 ID=mRNA_F-serratus_M_contig131.2335.1|Name=mRNA_F-serratus_M_contig131.2335.1|organism=Fucus serratus male|type=CDS|length=3540bp|location=Sequence derived from alignment at F-serratus_M_contig131:738590..757030+ (Fucus serratus male)back to top |