mRNA_F-serratus_M_contig131.2332.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig131.2332.1
Unique NamemRNA_F-serratus_M_contig131.2332.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig131.2332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig131contigF-serratus_M_contig131:675838..678648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1827
Cds size1716
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig131.2332.1prot_F-serratus_M_contig131.2332.1Fucus serratus malepolypeptideF-serratus_M_contig131 676573..678648 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929267.8717923-UTR-F-serratus_M_contig131:675837..6759101622929267.8717923-UTR-F-serratus_M_contig131:675837..675910Fucus serratus maleUTRF-serratus_M_contig131 675838..675910 +
1690962776.5297797-UTR-F-serratus_M_contig131:675837..6759101690962776.5297797-UTR-F-serratus_M_contig131:675837..675910Fucus serratus maleUTRF-serratus_M_contig131 675838..675910 +
1622929267.9410152-UTR-F-serratus_M_contig131:676535..6765721622929267.9410152-UTR-F-serratus_M_contig131:676535..676572Fucus serratus maleUTRF-serratus_M_contig131 676536..676572 +
1690962776.538289-UTR-F-serratus_M_contig131:676535..6765721690962776.538289-UTR-F-serratus_M_contig131:676535..676572Fucus serratus maleUTRF-serratus_M_contig131 676536..676572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929267.9577932-CDS-F-serratus_M_contig131:676572..6775451622929267.9577932-CDS-F-serratus_M_contig131:676572..677545Fucus serratus maleCDSF-serratus_M_contig131 676573..677545 +
1690962776.5520627-CDS-F-serratus_M_contig131:676572..6775451690962776.5520627-CDS-F-serratus_M_contig131:676572..677545Fucus serratus maleCDSF-serratus_M_contig131 676573..677545 +
1622929267.97213-CDS-F-serratus_M_contig131:677905..6786481622929267.97213-CDS-F-serratus_M_contig131:677905..678648Fucus serratus maleCDSF-serratus_M_contig131 677906..678648 +
1690962776.562922-CDS-F-serratus_M_contig131:677905..6786481690962776.562922-CDS-F-serratus_M_contig131:677905..678648Fucus serratus maleCDSF-serratus_M_contig131 677906..678648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig131.2332.1

>prot_F-serratus_M_contig131.2332.1 ID=prot_F-serratus_M_contig131.2332.1|Name=mRNA_F-serratus_M_contig131.2332.1|organism=Fucus serratus male|type=polypeptide|length=572bp
MNRGQLPPPPPLAPSHHHLEQRSPGGHSMERRGPGGVGAANSGGGGVGMD
RSIRPPHHMERLVGGGPVGPGGPMGPGGPVMPAGIQRVVGDPSGDRGGGG
HQGSMGREGAGFGPGGGMGFGPSSGVPNLNNPPPQDGSVVRGTGGGTLGG
LAAGGRGVAGFGSAPSFGPIGQGDPVFGPPDRRGGGPIGMGRGGFIGGGA
PPPLPHMGLRSGRGGGGTGVGTGAGVGRGPGDQAPSSKSKSRRKGTRKHE
RMQAKREAAAREAESKKGREGGDGSRKAAGVGVASTGGPGVTSGKVEVGG
DEKSGKEERKGEPGDGGASTAAGAERERTPVGGGNAATNLSVTTVALQAG
ANDNNVARSPAVSGSPGDGQLSAKATDCGKLAQDSSKGFDTVEARAAEEG
QAASRKMEPSSRERAVMQDNNGGSGDGNGGSDGVDIKRGSAGVKSGSDGR
GGGTNAGDAGVKGKVGSAEAGGRSAGVDDKITVGARDERGDVPVGSAGVN
SESTGMSRGVGDGISTASTGMRSGIGNLSSESANLSGGSVNISRGSANLS
GGNAKMSSGGNGGDSGYQPHTG
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mRNA from alignment at F-serratus_M_contig131:675838..678648+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig131.2332.1 ID=mRNA_F-serratus_M_contig131.2332.1|Name=mRNA_F-serratus_M_contig131.2332.1|organism=Fucus serratus male|type=mRNA|length=2811bp|location=Sequence derived from alignment at F-serratus_M_contig131:675838..678648+ (Fucus serratus male)
CGGACGTTAGGCGGCCCTGGAGGAAACATGCACGCTAGTGGGGGACGAAA
CGGCGTGGGAGGCGAAGGCTTGGGTCGACCGGGAATGAATCGGGACATCG
GTGGGATGCCCAATCGCGAAGGTCACTCGGGGTCCGCCGGAAGACCAGCT
GGAGCGGACGTTGGGCAGGAGATGCGAACGACCGCTAGGGGATCAGCTAT
GTTTGGGGGAGGTCCGCCGGGAATGGGTCAAGGACCGCCTCGCGGACCGA
GCTCTGAAAAACGGGGAACGAACGGTCCCGTCGGCCCGGGATTCGTTGCG
CGGGATCGTAACATAAACAGGTATGTGTACTTCAGACAAATTTATCAAAG
TTTTAGCTTGTCGTCTGGGAAGTTTCTTGATATTGTGAGGAGGCGGGGAA
TGGGGTGAAGAGGGGTGCATAAGCGATCCCGCTTTAGCTACAGAATCATT
TGCAGGGGGGAGGGGGGTTGAAGTGTTGCACTTCGCGGATGTGAAAATGC
TCAAAGCGCTTCGCGCCTACGTGTTGCGCTCGTGTTGCTCTTTCTCCTTT
CCACCAGAAATTTCTCGCAAGAACGAACTGGCGGTAATGGCGGCGGTGGT
AGTATGGAGAGTGGTATGCCGGGCAACAACCGTTCTCCTCAAGAGCATGG
TGTCCCTATGGACGGCCGAGGATCACGACAGACCAACCAACAACCTAGGG
CCCCGGGAGCCGACATCGGTCGAGTCCCACCCGTTATGAATCGAGGCCAG
CTACCTCCGCCACCGCCCCTGGCACCATCTCACCACCACCTGGAGCAGCG
TAGCCCAGGAGGACATAGTATGGAACGCCGTGGCCCGGGAGGCGTGGGGG
CAGCTAACAGTGGCGGTGGTGGCGTGGGCATGGACCGCAGCATTAGGCCG
CCGCATCATATGGAGCGCTTGGTCGGTGGAGGACCTGTAGGCCCCGGTGG
GCCGATGGGCCCCGGTGGACCCGTCATGCCAGCGGGTATTCAAAGGGTGG
TTGGAGACCCCTCGGGTGATCGGGGTGGCGGGGGCCACCAAGGGTCCATG
GGGCGCGAAGGAGCGGGGTTTGGCCCCGGCGGCGGGATGGGCTTCGGCCC
GAGCAGCGGCGTCCCCAACTTGAACAATCCTCCGCCCCAGGACGGTTCGG
TCGTTCGGGGAACCGGTGGGGGCACGCTGGGCGGCCTGGCCGCCGGTGGC
CGTGGCGTCGCCGGGTTTGGAAGTGCACCCTCCTTTGGTCCGATTGGCCA
AGGTGATCCCGTTTTTGGCCCTCCCGACCGTCGCGGGGGAGGGCCGATCG
GCATGGGTAGGGGAGGGTTCATAGGGGGCGGTGCGCCGCCGCCGCTGCCT
CACATGGGGCTCCGCAGCGGGCGTGGGGGGGGTGGAACAGGCGTCGGCAC
CGGGGCTGGGGTTGGCAGAGGCCCGGGAGACCAGGCTCCCTCGAGCAAGA
GCAAATCCAGGCGGAAGGGTACCCGAAAGCACGAGCGTATGCAGGCTAAG
CGCGAGGCGGCAGCGAGGGAAGCCGAAAGTAAGAAGGGCCGGGAGGGCGG
TGACGGCTCGCGCAAGGCTGCCGGGGTCGGGGTGGCCTCCACGGGTGGCC
CAGGTGTGACCTCGGGGAAGGTCGAGGTCGGAGGCGACGAGAAATCGGGT
AAAGAAGAGAGAAAGGGCGAGCCTGGAGATGGCGGCGCATCCACCGCGGC
AGGCGCAGGTGAAGATAGGTATCTCGTTGATACTGTCTTGAATGTTGCTT
GTTGTTGGTAAGAGTCATATCGTGATCATGTGGTACTGCGTGTAACATAA
AAACTAGCTCTTGCTTTGCTGAGACCAATATAAAGGATGACGCAAATTTG
CCAAACACACACAGATACGGGTGGGAGGGGCGTGGTATGTTTGTTCAAGA
CTTTTCAAATGCACGGGTTTGTGCCTGGTTGAGGGTCGTGACACCGACAT
GGAAGATTGATGACCTCGGCAGCAAAGTACGAAACGTACAAACAAAGGGT
TCCGAAGGGACTCTTCACCGTGACAACTTTTGTAACCCCGTCCCTGAAAA
TGTGCTGTTGTTCTGCAGAACGAGAACGTACGCCTGTCGGAGGCGGAAAC
GCCGCGACCAACTTGTCCGTCACCACCGTCGCCCTCCAAGCCGGCGCTAA
CGACAACAACGTAGCGAGATCGCCCGCGGTAAGCGGATCCCCTGGGGACG
GACAGCTGAGCGCGAAAGCGACTGACTGTGGGAAACTCGCTCAGGATAGC
TCGAAGGGCTTCGACACGGTCGAGGCCCGCGCCGCCGAGGAGGGACAAGC
CGCGAGCAGGAAGATGGAGCCCTCTAGCCGAGAGAGGGCCGTGATGCAGG
ACAACAACGGCGGCAGTGGCGATGGTAATGGTGGAAGCGATGGCGTCGAC
ATCAAACGCGGAAGCGCGGGCGTTAAAAGTGGAAGCGATGGTAGAGGTGG
AGGTACCAACGCTGGAGATGCAGGCGTCAAGGGAAAAGTCGGAAGTGCCG
AAGCTGGCGGCAGAAGCGCCGGCGTGGATGATAAAATAACTGTTGGCGCC
AGAGATGAACGCGGCGATGTTCCCGTCGGAAGCGCCGGCGTTAATAGTGA
AAGCACCGGCATGAGCCGCGGTGTTGGCGACGGTATCAGTACCGCGAGCA
CCGGCATGAGAAGCGGAATCGGGAACTTGAGCAGTGAAAGCGCCAACTTG
AGCGGTGGAAGCGTCAACATAAGCAGAGGAAGCGCCAACTTGAGCGGTGG
AAACGCCAAGATGAGCAGCGGTGGCAACGGCGGCGATTCGGGTTACCAAC
CGCATACAGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig131:675838..678648+

>mRNA_F-serratus_M_contig131.2332.1 ID=mRNA_F-serratus_M_contig131.2332.1|Name=mRNA_F-serratus_M_contig131.2332.1|organism=Fucus serratus male|type=CDS|length=3432bp|location=Sequence derived from alignment at F-serratus_M_contig131:675838..678648+ (Fucus serratus male)
ATGAATCGAGGCCAGCTACCTCCGCCACCGCCCCTGGCACCATCTCACCA
CCACCTGGAGCAGCGTAGCCCAGGAGGACATAGTATGGAACGCCGTGGCC
CGGGAGGCGTGGGGGCAGCTAACAGTGGCGGTGGTGGCGTGGGCATGGAC
CGCAGCATTAGGCCGCCGCATCATATGGAGCGCTTGGTCGGTGGAGGACC
TGTAGGCCCCGGTGGGCCGATGGGCCCCGGTGGACCCGTCATGCCAGCGG
GTATTCAAAGGGTGGTTGGAGACCCCTCGGGTGATCGGGGTGGCGGGGGC
CACCAAGGGTCCATGGGGCGCGAAGGAGCGGGGTTTGGCCCCGGCGGCGG
GATGGGCTTCGGCCCGAGCAGCGGCGTCCCCAACTTGAACAATCCTCCGC
CCCAGGACGGTTCGGTCGTTCGGGGAACCGGTGGGGGCACGCTGGGCGGC
CTGGCCGCCGGTGGCCGTGGCGTCGCCGGGTTTGGAAGTGCACCCTCCTT
TGGTCCGATTGGCCAAGGTGATCCCGTTTTTGGCCCTCCCGACCGTCGCG
GGGGAGGGCCGATCGGCATGGGTAGGGGAGGGTTCATAGGGGGCGGTGCG
CCGCCGCCGCTGCCTCACATGGGGCTCCGCAGCGGGCGTGGGGGGGGTGG
AACAGGCGTCGGCACCGGGGCTGGGGTTGGCAGAGGCCCGGGAGACCAGG
CTCCCTCGAGCAAGAGCAAATCCAGGCGGAAGGGTACCCGAAAGCACGAG
CGTATGCAGGCTAAGCGCGAGGCGGCAGCGAGGGAAGCCGAAAGTAAGAA
GGGCCGGGAGGGCGGTGACGGCTCGCGCAAGGCTGCCGGGGTCGGGGTGG
CCTCCACGGGTGGCCCAGGTGTGACCTCGGGGAAGGTCGAGGTCGGAGGC
GACGAGAAATCGGGTAAAGAAGAGAGAAAGGGCGAGCCTGGAGATGGCGG
CGCATCCACCGCGGCAGGCGCAGATGAATCGAGGCCAGCTACCTCCGCCA
CCGCCCCTGGCACCATCTCACCACCACCTGGAGCAGCGTAGCCCAGGAGG
ACATAGTATGGAACGCCGTGGCCCGGGAGGCGTGGGGGCAGCTAACAGTG
GCGGTGGTGGCGTGGGCATGGACCGCAGCATTAGGCCGCCGCATCATATG
GAGCGCTTGGTCGGTGGAGGACCTGTAGGCCCCGGTGGGCCGATGGGCCC
CGGTGGACCCGTCATGCCAGCGGGTATTCAAAGGGTGGTTGGAGACCCCT
CGGGTGATCGGGGTGGCGGGGGCCACCAAGGGTCCATGGGGCGCGAAGGA
GCGGGGTTTGGCCCCGGCGGCGGGATGGGCTTCGGCCCGAGCAGCGGCGT
CCCCAACTTGAACAATCCTCCGCCCCAGGACGGTTCGGTCGTTCGGGGAA
CCGGTGGGGGCACGCTGGGCGGCCTGGCCGCCGGTGGCCGTGGCGTCGCC
GGGTTTGGAAGTGCACCCTCCTTTGGTCCGATTGGCCAAGGTGATCCCGT
TTTTGGCCCTCCCGACCGTCGCGGGGGAGGGCCGATCGGCATGGGTAGGG
GAGGGTTCATAGGGGGCGGTGCGCCGCCGCCGCTGCCTCACATGGGGCTC
CGCAGCGGGCGTGGGGGGGGTGGAACAGGCGTCGGCACCGGGGCTGGGGT
TGGCAGAGGCCCGGGAGACCAGGCTCCCTCGAGCAAGAGCAAATCCAGGC
GGAAGGGTACCCGAAAGCACGAGCGTATGCAGGCTAAGCGCGAGGCGGCA
GCGAGGGAAGCCGAAAGTAAGAAGGGCCGGGAGGGCGGTGACGGCTCGCG
CAAGGCTGCCGGGGTCGGGGTGGCCTCCACGGGTGGCCCAGGTGTGACCT
CGGGGAAGGTCGAGGTCGGAGGCGACGAGAAATCGGGTAAAGAAGAGAGA
AAGGGCGAGCCTGGAGATGGCGGCGCATCCACCGCGGCAGGCGCAGAACG
AGAACGTACGCCTGTCGGAGGCGGAAACGCCGCGACCAACTTGTCCGTCA
CCACCGTCGCCCTCCAAGCCGGCGCTAACGACAACAACGTAGCGAGATCG
CCCGCGGTAAGCGGATCCCCTGGGGACGGACAGCTGAGCGCGAAAGCGAC
TGACTGTGGGAAACTCGCTCAGGATAGCTCGAAGGGCTTCGACACGGTCG
AGGCCCGCGCCGCCGAGGAGGGACAAGCCGCGAGCAGGAAGATGGAGCCC
TCTAGCCGAGAGAGGGCCGTGATGCAGGACAACAACGGCGGCAGTGGCGA
TGGTAATGGTGGAAGCGATGGCGTCGACATCAAACGCGGAAGCGCGGGCG
TTAAAAGTGGAAGCGATGGTAGAGGTGGAGGTACCAACGCTGGAGATGCA
GGCGTCAAGGGAAAAGTCGGAAGTGCCGAAGCTGGCGGCAGAAGCGCCGG
CGTGGATGATAAAATAACTGTTGGCGCCAGAGATGAACGCGGCGATGTTC
CCGTCGGAAGCGCCGGCGTTAATAGTGAAAGCACCGGCATGAGCCGCGGT
GTTGGCGACGGTATCAGTACCGCGAGCACCGGCATGAGAAGCGGAATCGG
GAACTTGAGCAGTGAAAGCGCCAACTTGAGCGGTGGAAGCGTCAACATAA
GCAGAGGAAGCGCCAACTTGAGCGGTGGAAACGCCAAGATGAGCAGCGGT
GGCAACGGCGGCGATTCGGGTTACCAACCGCATACAGGAAACGAGAACGT
ACGCCTGTCGGAGGCGGAAACGCCGCGACCAACTTGTCCGTCACCACCGT
CGCCCTCCAAGCCGGCGCTAACGACAACAACGTAGCGAGATCGCCCGCGG
TAAGCGGATCCCCTGGGGACGGACAGCTGAGCGCGAAAGCGACTGACTGT
GGGAAACTCGCTCAGGATAGCTCGAAGGGCTTCGACACGGTCGAGGCCCG
CGCCGCCGAGGAGGGACAAGCCGCGAGCAGGAAGATGGAGCCCTCTAGCC
GAGAGAGGGCCGTGATGCAGGACAACAACGGCGGCAGTGGCGATGGTAAT
GGTGGAAGCGATGGCGTCGACATCAAACGCGGAAGCGCGGGCGTTAAAAG
TGGAAGCGATGGTAGAGGTGGAGGTACCAACGCTGGAGATGCAGGCGTCA
AGGGAAAAGTCGGAAGTGCCGAAGCTGGCGGCAGAAGCGCCGGCGTGGAT
GATAAAATAACTGTTGGCGCCAGAGATGAACGCGGCGATGTTCCCGTCGG
AAGCGCCGGCGTTAATAGTGAAAGCACCGGCATGAGCCGCGGTGTTGGCG
ACGGTATCAGTACCGCGAGCACCGGCATGAGAAGCGGAATCGGGAACTTG
AGCAGTGAAAGCGCCAACTTGAGCGGTGGAAGCGTCAACATAAGCAGAGG
AAGCGCCAACTTGAGCGGTGGAAACGCCAAGATGAGCAGCGGTGGCAACG
GCGGCGATTCGGGTTACCAACCGCATACAGGA
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