mRNA_F-serratus_M_contig131.2330.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig131.2330.1
Unique NamemRNA_F-serratus_M_contig131.2330.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig131.2330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig131contigF-serratus_M_contig131:672784..673837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size550
Cds size549
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929267.6962507-CDS-F-serratus_M_contig131:672783..6728971622929267.6962507-CDS-F-serratus_M_contig131:672783..672897Fucus serratus maleCDSF-serratus_M_contig131 672784..672897 +
1690962776.4918287-CDS-F-serratus_M_contig131:672783..6728971690962776.4918287-CDS-F-serratus_M_contig131:672783..672897Fucus serratus maleCDSF-serratus_M_contig131 672784..672897 +
1622929267.71616-CDS-F-serratus_M_contig131:673401..6738361622929267.71616-CDS-F-serratus_M_contig131:673401..673836Fucus serratus maleCDSF-serratus_M_contig131 673402..673836 +
1690962776.502664-CDS-F-serratus_M_contig131:673401..6738361690962776.502664-CDS-F-serratus_M_contig131:673401..673836Fucus serratus maleCDSF-serratus_M_contig131 673402..673836 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig131.2330.1prot_F-serratus_M_contig131.2330.1Fucus serratus malepolypeptideF-serratus_M_contig131 672784..673836 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig131.2330.1

>prot_F-serratus_M_contig131.2330.1 ID=prot_F-serratus_M_contig131.2330.1|Name=mRNA_F-serratus_M_contig131.2330.1|organism=Fucus serratus male|type=polypeptide|length=183bp
QDWRQEHGHGYQGGHGWQGRGEERVGPDFVGDGYGRPQGPHQHQRPGGNF
LEPPFLGRGGGMYPRGPTGGGEDIRRGFPMVPGGMGVGVPRSNGPGGDGG
IPGPIGTGSGSLGPMGPDVLHDMSGSGGNMRGGGGNMTEMGPNNVRPGGH
PRPSGSSPRNGEPNYPGMRPGQDPRPHGVGMGG
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mRNA from alignment at F-serratus_M_contig131:672784..673837+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig131.2330.1 ID=mRNA_F-serratus_M_contig131.2330.1|Name=mRNA_F-serratus_M_contig131.2330.1|organism=Fucus serratus male|type=mRNA|length=1054bp|location=Sequence derived from alignment at F-serratus_M_contig131:672784..673837+ (Fucus serratus male)
CAAGATTGGAGACAAGAACACGGACACGGATATCAGGGGGGGCATGGTTG
GCAAGGGCGGGGAGAAGAGCGTGTGGGCCCGGACTTCGTCGGCGATGGAT
ACGGCCGTCCTCAGGTAACAGGAACTGGTGTAAGCTTACCTTTACTGCCA
CAGATAGCCTCTTCTGCGTAGGGGTTTTTGGGCGGGGGGTTTGCCGTAGA
TATCAAAAGTTAGGCCTACGGAGGATAAATCCTCCCCCCCCCCCCAGCCG
CTCCTAAAACGTGCGAAAGAATACCGTCCGGTGGGAGTATGTCTTGAGTA
TTCAGCGTTGTTTATTAGTTAGCCTCTCTAGAGACAGACAGCGTAGATCG
TATTTCGGTTTTGACGGTTCTCTTTTTCATTCTCACGCAAAAACAGGCGA
ACAAATATTGTGCGGGTACTTCTCTTTGTGGCCCTAAGCATGTTTTTTTT
CCGGAGCTCTTTGCTCGCGCGACAAATGTTTCGACCCCGAAATCACCGCA
CTCAGAGAAACACGTAGCTCGTGGCTCGTCTAGACCGCGCAACGTGTTTC
GATCCGTCGGCACCCCTCACTAGCTTTTTGACCGAGCACTCTTGCTGGCC
ATCCACGAACCCCAGCAGGGGCCGCATCAGCACCAGCGCCCTGGGGGAAA
CTTCCTCGAGCCTCCCTTTCTCGGGCGGGGAGGCGGTATGTACCCTCGCG
GTCCAACAGGAGGCGGCGAAGACATCCGGAGAGGGTTTCCTATGGTGCCA
GGAGGCATGGGAGTTGGTGTACCGCGGTCAAATGGTCCTGGCGGGGACGG
TGGAATTCCTGGACCAATCGGCACGGGTTCGGGAAGCCTAGGCCCGATGG
GACCGGACGTTCTACACGATATGAGCGGTTCGGGTGGGAACATGCGCGGC
GGCGGCGGGAACATGACCGAGATGGGGCCGAACAACGTGCGCCCGGGAGG
GCATCCACGGCCTTCCGGCTCGAGTCCGCGCAACGGTGAGCCCAACTACC
CCGGCATGAGGCCTGGACAAGATCCGCGTCCACACGGGGTGGGAATGGGG
GGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig131:672784..673837+

>mRNA_F-serratus_M_contig131.2330.1 ID=mRNA_F-serratus_M_contig131.2330.1|Name=mRNA_F-serratus_M_contig131.2330.1|organism=Fucus serratus male|type=CDS|length=1098bp|location=Sequence derived from alignment at F-serratus_M_contig131:672784..673837+ (Fucus serratus male)
CAAGATTGGAGACAAGAACACGGACACGGATATCAGGGGGGGCATGGTTG
GCAAGGGCGGGGAGAAGAGCGTGTGGGCCCGGACTTCGTCGGCGATGGAT
ACGGCCGTCCTCAGCAAGATTGGAGACAAGAACACGGACACGGATATCAG
GGGGGGCATGGTTGGCAAGGGCGGGGAGAAGAGCGTGTGGGCCCGGACTT
CGTCGGCGATGGATACGGCCGTCCTCAGGGGCCGCATCAGCACCAGCGCC
CTGGGGGAAACTTCCTCGAGCCTCCCTTTCTCGGGCGGGGAGGCGGTATG
TACCCTCGCGGTCCAACAGGAGGCGGCGAAGACATCCGGAGAGGGTTTCC
TATGGTGCCAGGAGGCATGGGAGTTGGTGTACCGCGGTCAAATGGTCCTG
GCGGGGACGGTGGAATTCCTGGACCAATCGGCACGGGTTCGGGAAGCCTA
GGCCCGATGGGACCGGACGTTCTACACGATATGAGCGGTTCGGGTGGGAA
CATGCGCGGCGGCGGCGGGAACATGACCGAGATGGGGCCGAACAACGTGC
GCCCGGGAGGGCATCCACGGCCTTCCGGCTCGAGTCCGCGCAACGGTGAG
CCCAACTACCCCGGCATGAGGCCTGGACAAGATCCGCGTCCACACGGGGT
GGGAATGGGGGGCGGGCCGCATCAGCACCAGCGCCCTGGGGGAAACTTCC
TCGAGCCTCCCTTTCTCGGGCGGGGAGGCGGTATGTACCCTCGCGGTCCA
ACAGGAGGCGGCGAAGACATCCGGAGAGGGTTTCCTATGGTGCCAGGAGG
CATGGGAGTTGGTGTACCGCGGTCAAATGGTCCTGGCGGGGACGGTGGAA
TTCCTGGACCAATCGGCACGGGTTCGGGAAGCCTAGGCCCGATGGGACCG
GACGTTCTACACGATATGAGCGGTTCGGGTGGGAACATGCGCGGCGGCGG
CGGGAACATGACCGAGATGGGGCCGAACAACGTGCGCCCGGGAGGGCATC
CACGGCCTTCCGGCTCGAGTCCGCGCAACGGTGAGCCCAACTACCCCGGC
ATGAGGCCTGGACAAGATCCGCGTCCACACGGGGTGGGAATGGGGGGC
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