mRNA_F-serratus_M_contig1309.2311.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1309.2311.1
Unique NamemRNA_F-serratus_M_contig1309.2311.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1309.2311.1 vs. uniprot
Match: D7FTD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD6_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 2.990e-17
Identity = 59/159 (37.11%), Postives = 85/159 (53.46%), Query Frame = 2 
Query:   14 NELDAYCENVLTLPFPEQIIHKSDLCKILLATDRRFDQAFMEDMRSEGVIIEGGDAWEDKE--------ALRISGPGGKIPRSLEETSESLAGATTSTQAFDLNA-----HDVCATPQIPPAGVATRRFIQDFLPALTRVSHVAVGSGATAGIGGIMYH 451
            ++L AYC NV+ LP  E ++ K+DLC +LL  DRR +QAF+ DM S G +     A + KE        + R  G  G +    EE  E + G  T   A D N      HD    P++PP+G A +RF+Q+ LP +TR++     S   +G+GG+ YH
Sbjct:   40 DDLTAYCNNVVELPRVENVVMKNDLCHLLLVADRRLNQAFVADMTSSGTLAAVRGAAQRKENEEPVQGESHREWGGSGMV----EENGERVRGKGTRGPASDDNELVDSLHD---EPEVPPSGAAMKRFVQETLPEMTRLTKTLERSNVCSGVGGLFYH 191
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BLAST of mRNA_F-serratus_M_contig1309.2311.1 vs. uniprot
Match: A0A6H5K678_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K678_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 7.980e-10
Identity = 39/91 (42.86%), Postives = 52/91 (57.14%), Query Frame = 3 
Query:  474 AVEGELVDSFTNLVCCAEIIQRYPGLCRISP--HLTHCILAASAVADR-PVYDQVRAAYNAIQLPGYKPTPPYEEWTGMSDICDSIFCRSV 737
            A++ E+  S  +       + RYPGLCR +   H  H  L   A A R   Y+ +RAAYN ++     P PP+EEWTGMSDICD  +CR+V
Sbjct:  572 ALDNEIAASVGSFHRSVSALLRYPGLCRYNSLSHNVHTQLWGLANARRREQYEALRAAYNPMRPARLSPAPPFEEWTGMSDICDHPYCRNV 662
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BLAST of mRNA_F-serratus_M_contig1309.2311.1 vs. uniprot
Match: D8LSE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSE2_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 7.240e-9
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 3 
Query:  537 RYPGLCRISP--HLTHCILAASAVADRPV-YDQVRAAYNAIQLPGYKPTPPYEEWTGMSDICDSIFCRSV 737
            RYPGLCR +   H  H  L   A A R   Y+ +RAAYN ++     P PP++EWTGMSDICD  +CR+V
Sbjct:  517 RYPGLCRYNSLSHNAHTQLWGLANARRREHYEALRAAYNPMRPASLSPAPPFDEWTGMSDICDHPYCRNV 586
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BLAST of mRNA_F-serratus_M_contig1309.2311.1 vs. uniprot
Match: A0A6H5K5S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5S2_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 8.700e-8
Identity = 35/70 (50.00%), Postives = 43/70 (61.43%), Query Frame = 3 
Query:  537 RYPGLCRISP--HLTHCILAASAVADR-PVYDQVRAAYNAIQLPGYKPTPPYEEWTGMSDICDSIFCRSV 737
            RYPGLCR +P  H  H  L A A A R   Y+ +RAAYN ++     P PP+EE TG+SDICD  +C  V
Sbjct:   71 RYPGLCRYNPRSHSAHTQLWALANARRREQYEALRAAYNPMRPARLSPAPPFEECTGVSDICDHPYCMYV 140
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1309.2311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FTD6_ECTSI2.990e-1737.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K678_9PHAE7.980e-1042.86Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LSE2_ECTSI7.240e-950.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5S2_9PHAE8.700e-850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1309contigF-serratus_M_contig1309:29241..32823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1261
Cds size810
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929266.7194972-CDS-F-serratus_M_contig1309:29240..297691622929266.7194972-CDS-F-serratus_M_contig1309:29240..29769Fucus serratus maleCDSF-serratus_M_contig1309 29241..29769 -
1690962775.9024036-CDS-F-serratus_M_contig1309:29240..297691690962775.9024036-CDS-F-serratus_M_contig1309:29240..29769Fucus serratus maleCDSF-serratus_M_contig1309 29241..29769 -
1622929266.734776-CDS-F-serratus_M_contig1309:29976..301441622929266.734776-CDS-F-serratus_M_contig1309:29976..30144Fucus serratus maleCDSF-serratus_M_contig1309 29977..30144 -
1690962775.9108734-CDS-F-serratus_M_contig1309:29976..301441690962775.9108734-CDS-F-serratus_M_contig1309:29976..30144Fucus serratus maleCDSF-serratus_M_contig1309 29977..30144 -
1622929266.7516572-CDS-F-serratus_M_contig1309:30620..307281622929266.7516572-CDS-F-serratus_M_contig1309:30620..30728Fucus serratus maleCDSF-serratus_M_contig1309 30621..30728 -
1690962775.9203298-CDS-F-serratus_M_contig1309:30620..307281690962775.9203298-CDS-F-serratus_M_contig1309:30620..30728Fucus serratus maleCDSF-serratus_M_contig1309 30621..30728 -
1622929266.767245-CDS-F-serratus_M_contig1309:31124..311291622929266.767245-CDS-F-serratus_M_contig1309:31124..31129Fucus serratus maleCDSF-serratus_M_contig1309 31125..31129 -
1690962775.931742-CDS-F-serratus_M_contig1309:31124..311291690962775.931742-CDS-F-serratus_M_contig1309:31124..31129Fucus serratus maleCDSF-serratus_M_contig1309 31125..31129 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929266.7802892-UTR-F-serratus_M_contig1309:31129..311671622929266.7802892-UTR-F-serratus_M_contig1309:31129..31167Fucus serratus maleUTRF-serratus_M_contig1309 31130..31167 -
1690962775.9461513-UTR-F-serratus_M_contig1309:31129..311671690962775.9461513-UTR-F-serratus_M_contig1309:31129..31167Fucus serratus maleUTRF-serratus_M_contig1309 31130..31167 -
1622929266.7948883-UTR-F-serratus_M_contig1309:31495..318481622929266.7948883-UTR-F-serratus_M_contig1309:31495..31848Fucus serratus maleUTRF-serratus_M_contig1309 31496..31848 -
1690962775.962183-UTR-F-serratus_M_contig1309:31495..318481690962775.962183-UTR-F-serratus_M_contig1309:31495..31848Fucus serratus maleUTRF-serratus_M_contig1309 31496..31848 -
1622929266.8115382-UTR-F-serratus_M_contig1309:32765..328231622929266.8115382-UTR-F-serratus_M_contig1309:32765..32823Fucus serratus maleUTRF-serratus_M_contig1309 32766..32823 -
1690962775.9789593-UTR-F-serratus_M_contig1309:32765..328231690962775.9789593-UTR-F-serratus_M_contig1309:32765..32823Fucus serratus maleUTRF-serratus_M_contig1309 32766..32823 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1309.2311.1prot_F-serratus_M_contig1309.2311.1Fucus serratus malepolypeptideF-serratus_M_contig1309 29241..31129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1309.2311.1

>prot_F-serratus_M_contig1309.2311.1 ID=prot_F-serratus_M_contig1309.2311.1|Name=mRNA_F-serratus_M_contig1309.2311.1|organism=Fucus serratus male|type=polypeptide|length=270bp
MGHGKPKLAVEGELVDSFTNLVCCAEIIQRYPGLCRISPHLTHCILAASA
VADRPVYDQVRAAYNAIQLPGYKPTPPYEEWTGMSDICDSIFCRSVQTET
KDCEFEWNSESLPSETSSSISKTKTDSPPAAPAALSGVDSELSPQRRSPS
SALVNAVDGVARIRTVTGPGMKAAVEASATAILPAAAEAATSPLPSTFYP
PTSPTISATFSTRISPPDACPDTHLTNELASATADGNGVASGVAAVMRGF
SGGASGISVESDYGAASAAP
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mRNA from alignment at F-serratus_M_contig1309:29241..32823-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1309.2311.1 ID=mRNA_F-serratus_M_contig1309.2311.1|Name=mRNA_F-serratus_M_contig1309.2311.1|organism=Fucus serratus male|type=mRNA|length=3583bp|location=Sequence derived from alignment at F-serratus_M_contig1309:29241..32823- (Fucus serratus male)
TCCGGACTCGAAGAATGAGCTCGATGCGTACTGCGAGAACGTGCTTACCT
TGCCCTTCGTGAGTCAGCTAAAGTTGTGGGGATGGGTAGTCGGCGGCGGG
CAGCGGACGTAGCAGCAACAGTAACGGAAAGGCGTTATTAAGTGTTCGGC
GTAAATACCCCCCCCTCCCCCTCTCGGGGATAGATAAAGCGGGTGTACTC
TGTTGTTGTGTTCACCGAAATGATGTGGGTGCGGACGTATCAGAGCATTC
TGTTTGAAATACCTCAATGATTCCTTGACGAAACTTCAAGTGTCCCATCT
AAGTACTAGAAATGGAGAGAAATCTACCACGTAGCGTGTAATACACCTTT
TGCTGGTTACGATATCGATGAGGTATTGCTTGGGCACTGATGACAAAATA
TCATACGCACCAGACTTCGCTTTTGAAGACGGATTTTGTTGCCTGGGGGC
GTTTCCTGGGTGATTTTTTCGCTGTGAAATAGAAAAAGGGGCGCACAAGT
GAAATGAGCCAATAACATGAGCCTAGTAGAGGAAAATGCGGGACGTTAGC
CTAAGCGCGAGATGGGGTACTGTGACCTGCAAAGATGAGCTATACCAATC
TCTGTCATAGTCGGGTTATTTGGGGCAAGTGCCACAACGGCTTCGTTGTA
GTAGATCATAATTCTTGCCGTCATCGTCGTACGTACTGTACTGATAAATG
GCAGATGTAACAGTTTCCATCTCTCACCCTTGCAACCATCATAAACCCCT
TATCCTTATCCACCCCCTTCTACCCCCCCGCCCCCCCGACACAGCCCCAC
CCCCGCTGCCTGTCCTTGAAGCCCTTTTAACGTGAGACGAAGCGCGGTGC
CCCCAATCAAAACCGCAAGCGTTTCCGTCTCCATCCGTTGAATATCTACC
GAGTAACACCTCGCCCTGCTCTGCCCCACCGTCGATCCCCTCCCCGGCCT
CCTCCCGCCCGGCCTCCTGCATAAGCCGGAACAAATTATACATAAGAGCG
ACCTCTGCAAGATATTACTAGCTACCGATCGACGGTTCGACCAAGCGTTT
ATGGAAGATATGCGCTCTGAGGGTGTTATAATTGAGGGCGGTGACGCGTG
GGAAGACAAGGAAGCTCTTCGGATAAGCGGCCCTGGAGGAAAGATTCCGC
GCTCGTTGGAAGAGACAAGCGAGTCCCTTGCGGGGGCGACGACCTCGACA
CAAGCCTTCGACCTGAACGCGCACGACGTGTGTGCTACTCCGCAGATTCC
CCCTGCAGGTGTCGCGACGAGGAGATTCATCCAAGACTTTTTGCCGGCGC
TAACGCGTGTCTCGCACGTCGCAGTAGGGTGAGAGACCAGATATTGGCCA
TGTTACGTATTACGATGCATCGAGCGTTTAACACAGTTAGGGCTAGTATC
GGTTAGATCATTTGGCCAGCCTTTCTCCCACCTGGGTAATATCCAGCTAC
CAACCCGCAGCGTGACTCCGGAGTGGGTGGGGTATCGGGGGGCGAAACTG
GGGCTTGTTGGCTCAAAACACATACCATGTTAAGTCCCCTCCCATCCCAA
AACTCTACCCTTTCCCCACCCCTAGTTCGCGCGCGCCGTGATCCTCCGTA
TCTAACTGAGCAATTTAAAATCCTTCGTAACATTGCTTTGCTTTCGCCTG
CGGCAGGTCGGGAGCGACCGCTGGGATAGGAGGTATCATGTACCATGGGT
AAGGAAACGAGCAGGCGCGCGTTGATTAAGTCACCTTAAAGACGAACCGT
GTGAATTAGAGCGGTCATATTTATTTAACAAGGTCAATGTTTGTAAGCTG
CTTACCGCGTCTGATGCCAAACTAACCCAGGTTAACGCCGTTTGCAAAAT
ATACATGGTACAATATTTACCTTCAGCCCCCTCCCCCTGGGGTTTCCATC
GCGATTGGTCCATTGATGCGGTGGTGTATATATCTAAAGAAGTACCAAGC
AAACACACTTTATTGTTTTCAATGACATTCAAGCAAAGCACACTCTTCCA
CACCCAACGATTGACAGCCCAAATCGAACCATCGCGATAAAAATTGCCGA
AACTCGTCCTGCGGTTCCATCGGCTAAAATTAAAAACCATCGCCTACATG
GAAAACCGAAACTCGCTGTGGAGGGGGAACTTGTCGACTCGTTTACAAAC
CTAGTGTGCTGCGCGGAAATTATCCAGCGATACCCCGGTCTCTGTCGCAT
CAGGTACTGTGGTTGCACGTTTGAGAAAATGTCTAGCACTAATATCTCTT
GTCAGTGCGTGTGTTACTGCCTATCTCTGAGTCGAGTATTCATTATGTCT
GCGTTTGTCGTCCTGCTCCTCTGATATATTCCTGCCTATCTACCTAAGTG
TGCGTGCATGTAGGGGGGGCGTTTATTGAATTGTACGTAACCACGCAGTC
TGGCCCTGTCGTGTTAACCATTCTAAGCTATCTCTCTCTCACTCTCACGC
ACACAAACACACACTTTCTCTATGTTTGTGTTCGTGTATGTCTTTCATCT
CGTGCGCTTTCGCGTTTGCATCGCGTCCTTTTCGTTTGTATCCCCGTGCC
CAAAACAACTTGAGCGACTAACTTGCGTTCACACAAAATGACTTCATCCT
TTTGCCAGACCTTTCCTCATGACACTAACCCTCCCTTTTTCTACCCGTCG
CCTGCTGTCGTGGCTTTGCATTGCCTCAGCCCGCACCTGACGCACTGCAT
CCTTGCCGCGAGCGCAGTCGCTGACCGTCCGGTGTACGACCAAGTCAGGG
CCGCCTACAACGCTATACAGCTACCCGGGTACAAACCGACCCCTCCCTAC
GAAGAGTGGACAGGCATGAGCGATATATGTGACAGTATTTTCTGCAGGTA
AACAAAGTGGCGAGGTGGATCTCGAATATATCCGCCCAGTCTGGCGTCGG
CGTCGGACATCGCCTTCTCAGTTTATTGAATTTTTAATTGTGGCCGATGG
AAGACGATGGTGTCTCAAGAACCAAGTGATATTGTATCCTGATTTTGTAT
GTTTTTCTATCGGCAATACTGATCTCTTCACTCTCCTCCACATGCCCTAA
ACAGGTCGGTCCAGACCGAGACCAAAGACTGCGAATTCGAATGGAACAGT
GAATCTTTGCCGTCGGAAACATCTTCTTCTATATCGAAGACAAAGACGGA
TTCGCCGCCAGCGGCTCCCGCTGCCCTCTCCGGAGTCGATTCTGAATTAT
CTCCTCAGAGGCGCAGCCCAAGCAGCGCTCTGGTGAACGCCGTCGACGGT
GTGGCTAGGATACGGACGGTGACTGGACCTGGGATGAAAGCAGCGGTAGA
GGCTTCGGCGACGGCGATCTTGCCAGCAGCGGCGGAGGCGGCGACCAGTC
CTCTGCCCTCCACGTTTTACCCGCCCACCTCACCCACGATATCTGCGACG
TTCTCCACTCGAATTAGCCCTCCCGATGCGTGCCCCGATACTCACTTAAC
AAACGAACTTGCCTCGGCAACTGCTGATGGGAATGGCGTCGCTTCAGGCG
TCGCAGCCGTGATGCGGGGGTTTTCAGGGGGGGCGAGCGGCATTAGCGTA
GAGTCAGACTACGGCGCGGCCTCGGCGGCGCCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1309:29241..32823-

>mRNA_F-serratus_M_contig1309.2311.1 ID=mRNA_F-serratus_M_contig1309.2311.1|Name=mRNA_F-serratus_M_contig1309.2311.1|organism=Fucus serratus male|type=CDS|length=1620bp|location=Sequence derived from alignment at F-serratus_M_contig1309:29241..32823- (Fucus serratus male)
ATGGGATGGGACATGGAAAACCGAAACTCGCTGTGGAGGGGGAACTTGTC
GACTCGTTTACAAACCTAGTGTGCTGCGCGGAAATTATCCAGCGATACCC
CGGTCTCTGTCGCATCAGACATGGAAAACCGAAACTCGCTGTGGAGGGGG
AACTTGTCGACTCGTTTACAAACCTAGTGTGCTGCGCGGAAATTATCCAG
CGATACCCCGGTCTCTGTCGCATCAGCCCGCACCTGACGCACTGCATCCT
TGCCGCGAGCGCAGTCGCTGACCGTCCGGTGTACGACCAAGTCAGGGCCG
CCTACAACGCTATACAGCTACCCGGGTACAAACCGACCCCTCCCTACGAA
GAGTGGACAGGCATGAGCGATATATGTGACAGTATTTTCTGCAGCCCGCA
CCTGACGCACTGCATCCTTGCCGCGAGCGCAGTCGCTGACCGTCCGGTGT
ACGACCAAGTCAGGGCCGCCTACAACGCTATACAGCTACCCGGGTACAAA
CCGACCCCTCCCTACGAAGAGTGGACAGGCATGAGCGATATATGTGACAG
TATTTTCTGCAGGTCGGTCCAGACCGAGACCAAAGACTGCGAATTCGAAT
GGAACAGTGAATCTTTGCCGTCGGAAACATCTTCTTCTATATCGAAGACA
AAGACGGATTCGCCGCCAGCGGCTCCCGCTGCCCTCTCCGGAGTCGATTC
TGAATTATCTCCTCAGAGGCGCAGCCCAAGCAGCGCTCTGGTGAACGCCG
TCGACGGTGTGGCTAGGATACGGACGGTGACTGGACCTGGGATGAAAGCA
GCGGTAGAGGCTTCGGCGACGGCGATCTTGCCAGCAGCGGCGGAGGCGGC
GACCAGTCCTCTGCCCTCCACGTTTTACCCGCCCACCTCACCCACGATAT
CTGCGACGTTCTCCACTCGAATTAGCCCTCCCGATGCGTGCCCCGATACT
CACTTAACAAACGAACTTGCCTCGGCAACTGCTGATGGGAATGGCGTCGC
TTCAGGCGTCGCAGCCGTGATGCGGGGGTTTTCAGGGGGGGCGAGCGGCA
TTAGCGTAGAGTCAGACTACGGCGCGGCCTCGGCGGCGCCGGTCGGTCCA
GACCGAGACCAAAGACTGCGAATTCGAATGGAACAGTGAATCTTTGCCGT
CGGAAACATCTTCTTCTATATCGAAGACAAAGACGGATTCGCCGCCAGCG
GCTCCCGCTGCCCTCTCCGGAGTCGATTCTGAATTATCTCCTCAGAGGCG
CAGCCCAAGCAGCGCTCTGGTGAACGCCGTCGACGGTGTGGCTAGGATAC
GGACGGTGACTGGACCTGGGATGAAAGCAGCGGTAGAGGCTTCGGCGACG
GCGATCTTGCCAGCAGCGGCGGAGGCGGCGACCAGTCCTCTGCCCTCCAC
GTTTTACCCGCCCACCTCACCCACGATATCTGCGACGTTCTCCACTCGAA
TTAGCCCTCCCGATGCGTGCCCCGATACTCACTTAACAAACGAACTTGCC
TCGGCAACTGCTGATGGGAATGGCGTCGCTTCAGGCGTCGCAGCCGTGAT
GCGGGGGTTTTCAGGGGGGGCGAGCGGCATTAGCGTAGAGTCAGACTACG
GCGCGGCCTCGGCGGCGCCG
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