mRNA_F-serratus_M_contig1308.2305.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1308.2305.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 100 bits (249), Expect = 5.550e-22 Identity = 61/149 (40.94%), Postives = 88/149 (59.06%), Query Frame = 1
Query: 1 ITVATHNVRTMAVDGKHGVGR-VLDVLSVYDRLGCDVIGLQETRRSGQSAFSQAGYLVYCSG-ECGDENGGKKGQGGVGLAVRT----SITRADRPPEFISDRLLKVTLELRGRAKAVTFFVAYAPIETHNASN------KHAFWTTLE 411
++ T NVRT+A G++ +G V+ V+ + GCDVIGLQETRR+GQ + + GY++ SG G ++ K+G GVG+A++ S+ R E IS RL+KV L++ GR VTF V YAP ET + K +FWT L+
Sbjct: 175 LSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKD--KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALD 320
BLAST of mRNA_F-serratus_M_contig1308.2305.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 7.300e-22 Identity = 60/149 (40.27%), Postives = 88/149 (59.06%), Query Frame = 1
Query: 1 ITVATHNVRTMAVDGKHGVGR-VLDVLSVYDRLGCDVIGLQETRRSGQSAFSQAGYLVYCSG-ECGDENGGKKGQGGVGLAVRTSITRA----DRPPEFISDRLLKVTLELRGRAKAVTFFVAYAPIET------HNASNKHAFWTTLE 411
++ T NV T+A G++ +G V+ V+ + GCDVIGLQETRR GQ + + GY++ SG G ++ K+G GVG+A++ +I + R E IS RL+KV L++ GR VTF V YAP ET + + K +FWT L+
Sbjct: 9 LSFGTFNVHTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD--KRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALD 154
BLAST of mRNA_F-serratus_M_contig1308.2305.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE) HSP 1 Score: 100 bits (248), Expect = 7.840e-22 Identity = 61/149 (40.94%), Postives = 89/149 (59.73%), Query Frame = 1
Query: 1 ITVATHNVRTMAVDGKHGVGR-VLDVLSVYDRLGCDVIGLQETRRSGQSAFSQAGYLVYCSG-ECGDENGGKKGQGGVGLAVRT----SITRADRPPEFISDRLLKVTLELRGRAKAVTFFVAYAPIET------HNASNKHAFWTTLE 411
++ T NVRT+A G++ +G V+ V+ + GCDVIGLQETRR+GQ + + GY++ SG G ++ K+G GVG+A++ S+ R E IS RL+KV L++ GR VTF V YAP ET + + K +FWT L+
Sbjct: 86 LSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKD--KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALD 231
BLAST of mRNA_F-serratus_M_contig1308.2305.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 5.690e-21 Identity = 59/149 (39.60%), Postives = 86/149 (57.72%), Query Frame = 1
Query: 1 ITVATHNVRTMAVDGKHGVGR-VLDVLSVYDRLGCDVIGLQETRRSGQSAFSQAGYLVYCSG-ECGDENGGKKGQGGVGLAVRT----SITRADRPPEFISDRLLKVTLELRGRAKAVTFFVAYAPIET------HNASNKHAFWTTLE 411
++ T NVRT+A G++ +G V+ V+ + GCDVIGLQETRR GQ + + GY++ SG G ++ K+G GVG+A++ S+ R E I RL+KV L + GR +TF V YAP ET + + K +FWT L+
Sbjct: 148 LSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD--KRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRI-GRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALD 293
BLAST of mRNA_F-serratus_M_contig1308.2305.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 1.340e-20 Identity = 59/149 (39.60%), Postives = 86/149 (57.72%), Query Frame = 1
Query: 1 ITVATHNVRTMAVDGKHGVGR-VLDVLSVYDRLGCDVIGLQETRRSGQSAFSQAGYLVYCSG-ECGDENGGKKGQGGVGLAVRT----SITRADRPPEFISDRLLKVTLELRGRAKAVTFFVAYAPIET------HNASNKHAFWTTLE 411
++ NVRT+A G+ +G V+ ++ + GCDVIGLQETRR GQ + + GY++ SG G ++ K+G GVG+A++ S+ R E IS RL+KV L++ GR VTF V YAP ET + + K +FWT L+
Sbjct: 59 LSFGAFNVRTLAYSGRKPIGHNVMTIMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD--KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALD 204
BLAST of mRNA_F-serratus_M_contig1308.2305.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 1.340e-20 Identity = 58/149 (38.93%), Postives = 88/149 (59.06%), Query Frame = 1
Query: 1 ITVATHNVRTMAVDGKHGVGR-VLDVLSVYDRLGCDVIGLQETRRSGQSAFSQAGYLVYCSG-ECGDENGGKKGQGGVGLAVRTS----ITRADRPPEFISDRLLKVTLELRGRAKAVTFFVAYAPIET------HNASNKHAFWTTLE 411
++ T +VRT+ G++ +G V+ V+ + GCDVIGLQETRR GQ + + GY++ SG G ++ K+G+ GVG+A++ + + R E IS RL+KV L++ GR VTF V YAP ET + + K +FWT L+
Sbjct: 155 LSFGTFSVRTLVYSGRNPIGHNVMKVMQISSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD--KRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALD 300
BLAST of mRNA_F-serratus_M_contig1308.2305.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 1.850e-20 Identity = 60/149 (40.27%), Postives = 87/149 (58.39%), Query Frame = 1
Query: 1 ITVATHNVRTMAVDGKHGVGR-VLDVLSVYDRLGCDVIGLQETRRSGQSAFSQAGYLVYCSG-ECGDENGGKKGQGGVGLAVRT----SITRADRPPEFISDRLLKVTLELRGRAKAVTFFVAYAPIET------HNASNKHAFWTTLE 411
++ T NV T+A G++ +G V+ V+ + GCDVIGLQETRR GQ + + GY++ SG G ++ K+G GVG+A++ S+ R E IS RL+KV L++ GR VTF V YAP ET + + K +FWT L+
Sbjct: 657 LSFGTFNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD--KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALD 802
BLAST of mRNA_F-serratus_M_contig1308.2305.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 4.580e-20 Identity = 58/149 (38.93%), Postives = 86/149 (57.72%), Query Frame = 1
Query: 1 ITVATHNVRTMAVDGKHGVGR-VLDVLSVYDRLGCDVIGLQETRRSGQSAFSQAGYLVYCSG-ECGDENGGKKGQGGVGLAVRT----SITRADRPPEFISDRLLKVTLELRGRAKAVTFFVAYAPIET------HNASNKHAFWTTLE 411
++ T NVRT+A G++ +G V+ V+ + GCDVIGLQETRR+GQ + + GY++ SG G ++ K+G GVG+ ++ S+ R E I RL+KV L++ GR V F V YAP ET + + K +FWT L+
Sbjct: 81 LSFGTFNVRTLACSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKD--KRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQI-GRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALD 226
BLAST of mRNA_F-serratus_M_contig1308.2305.1 vs. uniprot
Match: A0A6H5K0W6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W6_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 1.210e-19 Identity = 59/149 (39.60%), Postives = 86/149 (57.72%), Query Frame = 1
Query: 1 ITVATHNVRTMAVDGKHGVGR-VLDVLSVYDRLGCDVIGLQETRRSGQSAFSQAGYLVYCSG-ECGDENGGKKGQGGVGLAVRT----SITRADRPPEFISDRLLKVTLELRGRAKAVTFFVAYAPIET------HNASNKHAFWTTLE 411
++ T NVRT+A G++ +G V+ V+ + GCDVIGLQETRR GQ + + GY++ SG G ++ K+G GVG+A++ S+ R E S RL+KV L++ GR VTF V YA ET + + K +FWT L+
Sbjct: 820 LSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD--KRGVHGVGIAIKEVMWESVGEEGRTVECSSPRLMKVRLQI-GRTCRVTFVVGYALTETVRTTAGRDVNAKDSFWTALD 965
BLAST of mRNA_F-serratus_M_contig1308.2305.1 vs. uniprot
Match: A0A6H5K5A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A7_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 1.210e-19 Identity = 58/149 (38.93%), Postives = 86/149 (57.72%), Query Frame = 1
Query: 1 ITVATHNVRTMAVDGKHGVGR-VLDVLSVYDRLGCDVIGLQETRRSGQSAFSQAGYLVYCSG-ECGDENGGKKGQGGVGLAVRT----SITRADRPPEFISDRLLKVTLELRGRAKAVTFFVAYAPIET------HNASNKHAFWTTLE 411
++ T NVRT+A G++ +G V+ V+ ++ GCDVIGLQETRR GQ + + GY++ SG G ++ K+G GVG+A++ S+ R E IS RL+KV L++ G V V YAP ET + + K +FWT L+
Sbjct: 133 LSFGTFNVRTLAYSGRNPIGHNVMTVMQIWSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD--KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GHTCGVISVVGYAPTETVRTTAGGDVNAKDSFWTALD 278 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1308.2305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1308.2305.1 >prot_F-serratus_M_contig1308.2305.1 ID=prot_F-serratus_M_contig1308.2305.1|Name=mRNA_F-serratus_M_contig1308.2305.1|organism=Fucus serratus male|type=polypeptide|length=128bp MAVDGKHGVGRVLDVLSVYDRLGCDVIGLQETRRSGQSAFSQAGYLVYCSback to top mRNA from alignment at F-serratus_M_contig1308:15688..16101+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1308.2305.1 ID=mRNA_F-serratus_M_contig1308.2305.1|Name=mRNA_F-serratus_M_contig1308.2305.1|organism=Fucus serratus male|type=mRNA|length=414bp|location=Sequence derived from alignment at F-serratus_M_contig1308:15688..16101+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1308:15688..16101+ >mRNA_F-serratus_M_contig1308.2305.1 ID=mRNA_F-serratus_M_contig1308.2305.1|Name=mRNA_F-serratus_M_contig1308.2305.1|organism=Fucus serratus male|type=CDS|length=768bp|location=Sequence derived from alignment at F-serratus_M_contig1308:15688..16101+ (Fucus serratus male)back to top |