mRNA_F-serratus_M_contig1306.2297.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1306.2297.1
Unique NamemRNA_F-serratus_M_contig1306.2297.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1306.2297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1306contigF-serratus_M_contig1306:12578..12919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929263.5919545-CDS-F-serratus_M_contig1306:12577..129191622929263.5919545-CDS-F-serratus_M_contig1306:12577..12919Fucus serratus maleCDSF-serratus_M_contig1306 12578..12919 +
1690962774.5494971-CDS-F-serratus_M_contig1306:12577..129191690962774.5494971-CDS-F-serratus_M_contig1306:12577..12919Fucus serratus maleCDSF-serratus_M_contig1306 12578..12919 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1306.2297.1prot_F-serratus_M_contig1306.2297.1Fucus serratus malepolypeptideF-serratus_M_contig1306 12578..12919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1306.2297.1

>prot_F-serratus_M_contig1306.2297.1 ID=prot_F-serratus_M_contig1306.2297.1|Name=mRNA_F-serratus_M_contig1306.2297.1|organism=Fucus serratus male|type=polypeptide|length=114bp
FGSRVVPGEPRGLCTSQRNSKRWACELGKVLRSREVRTSEAEDFEPPGTI
SSYCRATDALRGGPRRKRWSGSVVDPEGRRGVEGTSKAKPKPGISLLLQL
SARSSACALEVSG*
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mRNA from alignment at F-serratus_M_contig1306:12578..12919+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1306.2297.1 ID=mRNA_F-serratus_M_contig1306.2297.1|Name=mRNA_F-serratus_M_contig1306.2297.1|organism=Fucus serratus male|type=mRNA|length=342bp|location=Sequence derived from alignment at F-serratus_M_contig1306:12578..12919+ (Fucus serratus male)
TTCGGCTCTCGAGTGGTCCCTGGGGAACCAAGGGGGTTGTGTACCTCACA
AAGGAACTCAAAGCGTTGGGCTTGTGAGCTCGGGAAAGTGTTGCGATCTC
GAGAAGTGAGGACGTCGGAGGCTGAAGACTTTGAGCCTCCGGGGACCATC
TCGTCTTATTGCCGGGCGACAGACGCGCTACGAGGAGGACCCCGGAGAAA
GAGGTGGAGCGGAAGCGTCGTAGACCCTGAGGGCAGGAGGGGTGTGGAAG
GGACGTCGAAGGCGAAGCCCAAACCTGGAATCAGTCTATTATTGCAGCTC
TCCGCGCGATCGAGTGCTTGCGCTCTGGAGGTGAGCGGCTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1306:12578..12919+

>mRNA_F-serratus_M_contig1306.2297.1 ID=mRNA_F-serratus_M_contig1306.2297.1|Name=mRNA_F-serratus_M_contig1306.2297.1|organism=Fucus serratus male|type=CDS|length=684bp|location=Sequence derived from alignment at F-serratus_M_contig1306:12578..12919+ (Fucus serratus male)
TTCGGCTCTCGAGTGGTCCCTGGGGAACCAAGGGGGTTGTGTACCTCACA
AAGGAACTCAAAGCGTTGGGCTTGTGAGCTCGGGAAAGTGTTGCGATCTC
GAGAAGTGAGGACGTCGGAGGCTGAAGACTTTGAGCCTCCGGGGACCATC
TCGTCTTATTGCCGGGCGACAGACGCGCTACGAGGAGGACCCCGGAGAAA
GAGGTGGAGCGGAAGCGTCGTAGACCCTGAGGGCAGGAGGGGTGTGGAAG
GGACGTCGAAGGCGAAGCCCAAACCTGGAATCAGTCTATTATTGCAGCTC
TCCGCGCGATCGAGTGCTTGCGCTCTGGAGGTGAGCGGCTGATTCGGCTC
TCGAGTGGTCCCTGGGGAACCAAGGGGGTTGTGTACCTCACAAAGGAACT
CAAAGCGTTGGGCTTGTGAGCTCGGGAAAGTGTTGCGATCTCGAGAAGTG
AGGACGTCGGAGGCTGAAGACTTTGAGCCTCCGGGGACCATCTCGTCTTA
TTGCCGGGCGACAGACGCGCTACGAGGAGGACCCCGGAGAAAGAGGTGGA
GCGGAAGCGTCGTAGACCCTGAGGGCAGGAGGGGTGTGGAAGGGACGTCG
AAGGCGAAGCCCAAACCTGGAATCAGTCTATTATTGCAGCTCTCCGCGCG
ATCGAGTGCTTGCGCTCTGGAGGTGAGCGGCTGA
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