mRNA_F-serratus_M_contig1303.2287.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1303.2287.1
Unique NamemRNA_F-serratus_M_contig1303.2287.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1303.2287.1 vs. uniprot
Match: D7FVB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVB7_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 8.930e-35
Identity = 86/143 (60.14%), Postives = 104/143 (72.73%), Query Frame = 1 
Query:  118 LHHGHPITVAPRTSYADQLRSRGPLSALRMTGGDATDATESAKTKAQRMAEQAAALREEAAASEAELRPP-EKAPEGGERASPEVRPEDMPPDMRISDNMKSRLRQELISQGADPNRSVGNPILVVAAVIAVLVIIGGKGIFY 543
            LH G     A  +S+   +R+ G + ALRM  GD  DA  +A+  A+R+ EQAAALRE AA SEAE+RP  +KA E  E   P VRPEDMPP  +IS++M+ RLRQELISQGADPNRS GNPILVVA +IAVLVI+GG+GIFY
Sbjct:    2 LHGGVTPRPASSSSHLHSVRAVG-VGALRMADGDG-DAMSAAEETAKRLKEQAAALRESAAESEAEIRPASDKADEVTETPVPAVRPEDMPPKQKISNDMQKRLRQELISQGADPNRSAGNPILVVAGIIAVLVIVGGQGIFY 142
[Close]
BLAST of mRNA_F-serratus_M_contig1303.2287.1 vs. uniprot
Match: A0A836CMY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMY3_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 9.050e-17
Identity = 60/137 (43.80%), Postives = 88/137 (64.23%), Query Frame = 1 
Query:  136 ITVAPRTSYADQLRSRGPLSALRMTGGDATDATESAKTKAQRMAEQAAALREEAAASEAELRPPEKAPEGGE-RASPEVRPEDMPPDMRISDNMKSRLRQELISQGADPNRSVGNPILVVAAVIAVLVIIGGKGIFY 543
            +  APRT  ++Q++    +  +R        +T+    +AQR+++QAA LREE AA E +   P+ AP+    +A  +   E    +  +S+ MK++LR+ELISQGADPNRS GN IL+VAAVI VLV++GG+GIFY
Sbjct:   23 LAFAPRTLQSNQIKR---VHRMRTRHSKLAMSTDKGAAEAQRLSDQAAKLREEIAAMEGDR--PKPAPKAEPVQAKADAEEEAGFKEKELSEAMKAKLRKELISQGADPNRSSGNGILIVAAVIGVLVVLGGQGIFY 154
[Close]
BLAST of mRNA_F-serratus_M_contig1303.2287.1 vs. uniprot
Match: A0A7S2V2G0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2G0_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.090e-13
Identity = 36/48 (75.00%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:  400 ISDNMKSRLRQELISQGADPNRSVGNPILVVAAVIAVLVIIGGKGIFY 543
            +S+NMK++LR+ELISQGADPNR+ GNPIL+V A+IAVLVI GG+GIFY
Sbjct:  103 MSENMKNKLRRELISQGADPNRASGNPILIVGAIIAVLVIAGGQGIFY 150
[Close]
BLAST of mRNA_F-serratus_M_contig1303.2287.1 vs. uniprot
Match: A0A7S4D594_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D594_HETAK)

HSP 1 Score: 73.2 bits (178), Expect = 6.940e-12
Identity = 48/98 (48.98%), Postives = 65/98 (66.33%), Query Frame = 1 
Query:  250 KAQRMAEQAAALREEAAASEAELRPPEKAPEGGERASPEVRPEDMPPDMRISDNMKSRLRQELISQGADPNRSVGNPILVVAAVIAVLVIIGGKGIFY 543
            KA+++AEQAAALR EA A EAE +    A             E++P  + IS  MK +LR+EL +QGA+PN++  NPIL+++ VIAVLVI+ G GIFY
Sbjct:   53 KAKKLAEQAAALRAEADAMEAEKKASMPAAXXXXXXXXXAMEEELPR-VEISSAMKEKLRRELEAQGANPNKAAANPILIISGVIAVLVILAGGGIFY 149
[Close]
BLAST of mRNA_F-serratus_M_contig1303.2287.1 vs. uniprot
Match: W7TC08_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TC08_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.310e-9
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:  379 DMPPDMRISDNMKSRLRQELISQGADPNRSVGNPILVVAAVIAVLVIIGGKGIFY 543
            +MPP   +SDNM+ +L  E   QGAD N S GNPIL++A VI VLV++GGKG FY
Sbjct:   79 EMPPPTPLSDNMRQKLLNEARGQGADYNTSNGNPILLIAVVIGVLVVLGGKGFFY 133
[Close]
BLAST of mRNA_F-serratus_M_contig1303.2287.1 vs. uniprot
Match: A0A0G4H860_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H860_VITBC)

HSP 1 Score: 63.2 bits (152), Expect = 2.400e-8
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:  400 ISDNMKSRLRQELISQGADPNRSVGNPILVVAAVIAVLVIIGGKGIFY 543
            IS +MK RL +EL  QGA+PN+S GNP L++  +IA LVI+GGKGIFY
Sbjct:  105 ISPDMKKRLLRELEGQGANPNKSRGNPYLIIFVIIAALVILGGKGIFY 152
[Close]
BLAST of mRNA_F-serratus_M_contig1303.2287.1 vs. uniprot
Match: A0A4D9CZL2_9STRA (Symplekin_C domain-containing protein n=2 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZL2_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.310e-7
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:  400 ISDNMKSRLRQELISQGADPNRSVGNPILVVAAVIAVLVIIGGKGIFY 543
            +SDNM+ +L  E   QGAD N S GNPIL++A VI VLV++GGKG FY
Sbjct:  166 LSDNMRQKLLNEARGQGADYNTSNGNPILLIAVVIGVLVVLGGKGFFY 213
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1303.2287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FVB7_ECTSI8.930e-3560.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CMY3_9STRA9.050e-1743.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V2G0_9STRA3.090e-1375.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4D594_HETAK6.940e-1248.98Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TC08_9STRA1.310e-958.18Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A0G4H860_VITBC2.400e-862.50Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A4D9CZL2_9STRA3.310e-760.42Symplekin_C domain-containing protein n=2 Tax=Nann... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1303contigF-serratus_M_contig1303:135704..145970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue8.6e-29
Seed eggNOG ortholog2880.D7FVB7
Hectar predicted targeting categorysignal peptide
EggNOG OGs2BW48@1,2T009@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_000510.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1232
Cds size525
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1303.2287.1prot_F-serratus_M_contig1303.2287.1Fucus serratus malepolypeptideF-serratus_M_contig1303 135725..145284 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929262.1296566-UTR-F-serratus_M_contig1303:135703..1357241622929262.1296566-UTR-F-serratus_M_contig1303:135703..135724Fucus serratus maleUTRF-serratus_M_contig1303 135704..135724 +
1690962773.9414976-UTR-F-serratus_M_contig1303:135703..1357241690962773.9414976-UTR-F-serratus_M_contig1303:135703..135724Fucus serratus maleUTRF-serratus_M_contig1303 135704..135724 +
1622929262.1956728-UTR-F-serratus_M_contig1303:145284..1459701622929262.1956728-UTR-F-serratus_M_contig1303:145284..145970Fucus serratus maleUTRF-serratus_M_contig1303 145285..145970 +
1690962774.010741-UTR-F-serratus_M_contig1303:145284..1459701690962774.010741-UTR-F-serratus_M_contig1303:145284..145970Fucus serratus maleUTRF-serratus_M_contig1303 145285..145970 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929262.1473525-CDS-F-serratus_M_contig1303:135724..1358761622929262.1473525-CDS-F-serratus_M_contig1303:135724..135876Fucus serratus maleCDSF-serratus_M_contig1303 135725..135876 +
1690962773.962032-CDS-F-serratus_M_contig1303:135724..1358761690962773.962032-CDS-F-serratus_M_contig1303:135724..135876Fucus serratus maleCDSF-serratus_M_contig1303 135725..135876 +
1622929262.1603115-CDS-F-serratus_M_contig1303:144075..1441941622929262.1603115-CDS-F-serratus_M_contig1303:144075..144194Fucus serratus maleCDSF-serratus_M_contig1303 144076..144194 +
1690962773.9733298-CDS-F-serratus_M_contig1303:144075..1441941690962773.9733298-CDS-F-serratus_M_contig1303:144075..144194Fucus serratus maleCDSF-serratus_M_contig1303 144076..144194 +
1622929262.1717432-CDS-F-serratus_M_contig1303:144667..1449071622929262.1717432-CDS-F-serratus_M_contig1303:144667..144907Fucus serratus maleCDSF-serratus_M_contig1303 144668..144907 +
1690962773.9831588-CDS-F-serratus_M_contig1303:144667..1449071690962773.9831588-CDS-F-serratus_M_contig1303:144667..144907Fucus serratus maleCDSF-serratus_M_contig1303 144668..144907 +
1622929262.1839821-CDS-F-serratus_M_contig1303:145270..1452841622929262.1839821-CDS-F-serratus_M_contig1303:145270..145284Fucus serratus maleCDSF-serratus_M_contig1303 145271..145284 +
1690962773.9947119-CDS-F-serratus_M_contig1303:145270..1452841690962773.9947119-CDS-F-serratus_M_contig1303:145270..145284Fucus serratus maleCDSF-serratus_M_contig1303 145271..145284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1303.2287.1

>prot_F-serratus_M_contig1303.2287.1 ID=prot_F-serratus_M_contig1303.2287.1|Name=mRNA_F-serratus_M_contig1303.2287.1|organism=Fucus serratus male|type=polypeptide|length=175bp
MFSLYAWFASYSLTILALSWEASSLLCGSVSRLHHGHPITVAPRTSYADQ
LRSRGPLSALRMTGGDATDATESAKTKAQRMAEQAAALREEAAASEAELR
PPEKAPEGGERASPEVRPEDMPPDMRISDNMKSRLRQELISQGADPNRSV
GNPILVVAAVIAVLVIIGGKGIFY*
back to top

mRNA from alignment at F-serratus_M_contig1303:135704..145970+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1303.2287.1 ID=mRNA_F-serratus_M_contig1303.2287.1|Name=mRNA_F-serratus_M_contig1303.2287.1|organism=Fucus serratus male|type=mRNA|length=10267bp|location=Sequence derived from alignment at F-serratus_M_contig1303:135704..145970+ (Fucus serratus male)
TGTATATCGTACACGTGAGAAATGTTCTCGCTATACGCCTGGTTCGCTTC
CTATTCGTTGACTATCTTAGCCTTGAGCTGGGAGGCTTCCTCCCTTTTAT
GCGGCAGCGTCAGCAGGTTGCATCATGGACATCCGATCACCGTGGCACCT
CGGACTTCATACGCAGACCAACTGTGAGCTCGCCTCCATAACGTCATGCG
TGGCAACCTCAGGATCACGTTGCTTGTTTGGTGCGTCAGCTGTAGCCTCG
ATCACAACTGCACTCGCTCCAAGATATCTGAACTTACTATGTGGAGGACG
AGGGAATGATCAACGTTTACAGAGCTTTGGTTTCATACTCATACTACTGT
AGGTACCTTGTACTTGTTGTACAGACCTGTTCATGTTCGAGAAGATACTC
TTACATGAGTTACTCACTGTGCTTTGTGGTCAACACTTTCAGCAGAGAGA
GTATGGATCGACCGGGAAAGGTTAGTTGCAAGGTTGTCAAATGCTTGTCA
ATCCTATGTCCCAGTTAGCGCCCAAGAACTTGATCTCGCGAGACAGGTTC
GGCCGTCTCGTCCCGCGTCAGCCCGTTTATTTTCCACACCAAAGCTGAAT
CTGGCATATTCAGGGTTGTAGATCATGTTCGAGACACGTTGGCCGATTTT
TACTATTTAATACCCTATGCAATGACCGGGTTCCCCAATAAAGATAGTAT
AATAGCACAGGGCCAGCATAGGGTCAACAGTAAAATATCGGGGAGGAACC
CGCCGTTTTATCCTGCACACTTACATCCAAAATAGAGAACTTCAGATTTT
CTTTAAAAATGACTCCATTACGTCTTATATTGTGTTGTTTTCAGCATCGG
GCCTGAAATATTGGTGAATCGGAGTATGTATGTATGGTCATAGTCCTCGC
ACATATAGCAAGAGTTTAGATCAACCGGGCAATGTTGCCAATCCTGCTCG
CGGCCAGCTCAACAGGGAAAATACATACTTCATATTTTCTTGGTCACGTT
CGCGCCTGAGAATTTGGCATCGCGAGACGTGTTCGGCTGTCCCGTCCCGC
GTCAGCCTACTATCTCCATACTCAGACTGAATCTGGTGCTACTTAAAGGA
TTCATCCGCGGCGGCGTCCATTTATTTATACAAAACCGCCTTACCCCATC
GGGTCAATCCCGAGTTTATCGGGTCACGCAATTGCGTACCAATGGCGTTC
ACTGCCGAGAGTCCGCCGGCACAACGCCTATAAACCTCAAGGTAGTTCCG
AACGAATGCTGCCGTGGCAGGTGTGTACCTGGACCAATTAATATGCGCCT
CTCTCTGCTCTTTCCCACACCCACTAATGGTATGTAGTGGGCATGTTGAA
ATGTAGATTGTAGAAACCGAGCGCCCCGGTGGTTCAGTTGATAACCTCGA
AGCCTTCTGACGTTGTTGGGACGTGAGATCGAATCTCGATGCAGTCACGC
GGACTGCGATTTTTCCTCACAAAATAAAATCATGCCCAACAAGTGAAGAA
CGATTAATTCGTGGGTACACAAAATTCGACGTCACGGTCGACGAGGGATG
GGGACGGCTGAAGTATTCTCGCGATAAAAAATAAGGCAAGCACCACTGAA
GGAAGGTGGAGAAATCATGTGCGACCTTCCTCCTGTGTGACCCCGGCTGG
TGCGTCCACAAGTCTGACATCCAGAATAAATGGGATGACAACACACACAC
ATACACACAGAATACACGCACACGTAAGTAGAGTCATACGTTTTCTAACG
ACTATTAGAGGTGGTTTTATTATATTAATATTACTATTAATAGTACGTAC
CGGTACTATTTTAGCCGAGTACTACAGAAGGACAAAGAGCCTTACAAGTA
CTGTATAGTAAAAGGGATAAATCCCGACCACCCGGTTGTAGCAGAAAACC
ATTACCGGTATTTGATGAAGTTACTGTTACTGTTTgTAATATTTATAGTG
TTGGTAGATTGCGTGATTAGCTCTAGTCCCGCGCGTTTCTACTAATTTTA
AAATATTTTTGTATACTACAATGTATTAGTAGTATTTAGTGAATATTGCA
CGACGGGAGTGCCGTAGAACGACGACCTGCGATAGCTCTACTTTATTATA
TGTTATAGCATTACAAGTACTCCTGGACATGTACTTACCAGGTACTACAG
GAGTTAAGATACTGGACTTGCTGTGTTGGCCTAGAAAATATATCCCCACC
TGCGAAGTACTTATAATAGTGTTGCAACGTCGTACGAACAGGTAAGGAAG
GAACACTCTTACAGCAGTACTATACTAGGTACTCGTACAAGAGTAGGCTG
CTATTGTCGCCCTACATATGTACCGTATCTTGACCTTGTATTATGTTGTA
TTGTACTGTACTGCGCTGTATTGCACTCCCATGTGACAGTCCCAATCGGC
AGGGAGGGGTAAACAACAAATCCAACCTCTCCCTGGTGGACGCCTATACT
ACACTACCGTACATACAGCACAGTACCGGTAGTCCTACTGTGTTAGTACA
ATACAGTGGCTCTACCGATGGAACTTTGCTTACAGTAATAAAGCGAACGA
AAGCAGCACAGAGGATCAAATTGTTGGTATTAATACGTACTGGTAGTATA
TTAAGGCTATAGTTAAACCTCAGAGTAAATACTAAGTCGGCGCTCTGGTT
TAATTATTAATTATAGCCTTATTATAGCACAACATGCAGACTTTTCTTTT
TTTCGCTTGGACCTTTTTGGATTCAGACTCCAGACGTTTATTTGCATCTA
CATAATAACTAGCTCTAGCGACGTCAAGATATTTACAGTTTTGGAGGGAT
TTTTCGACATATTTTTTACGACGAGTCGAAAACCCCTGCCACAAAACATG
GCAATCAACTCCACACGAGAAAGGCAATACAACAGACAAGTAAAAAGTCC
ACACGAAAGAGGAAAGAGGAGTCGTGCGTAAACTGCATGCAGCTATCAGC
AGTCCACAACTTTGAGACCTGCTGATAGTACATTAGTCAAAACAGTACCA
TATTAATATTAATATAATAGTCAAAACCATTGCTTGTTTGTTCAGTGTAT
AACGAGTTCCCTTGGTGTGTTTCAAGTTTTGAGGGCGACCTGCGACATGA
ACAATGCGGCTATGTTAACTGCAGAGTTTTCTATCGGCTTGGCATCATGA
CTATGACTGCTTCATTCAATGCTGCAATATTGTACCACTATGGAATTAGG
ACTCTCAGAGTGTGTTCGTTTTGGTATACTGCACCTACATGACCATAAAT
CTAAGTGTATAGTTTGACGGTGGGTCTCTGACGGAGGTTTACTTGTGGAT
GCGTTCAGAATTTATTTAAACAGTACCTGGTACAGTACCTCGTATCATTT
TAACAGTTGGACCCTCCGTTAAAGATTGCTTGAATGCAGTTACCACGTAT
ACTACTTTTGATTTTTTGTATCTTACTTATGGCCGATGGGCCTCAACCAC
AACAGCGTGCTAGGTTACCAATCTCACCTATCAATACTGCAACATTGCCA
TCATCCATCCTATTAATATTAATGCCTGAGATCATTATTAATAAACTATT
ACTAAGGAAGGACCTTCTCATCTCTCCCGTGTTCTCGCCCTACCATACCA
CATCTATCATCTATCATCTATCATCTATCATCGATCATCTATCATCTATC
ATCTATCATCTATCATCTATCATCTATCATCTATCATCTATCATCTATCA
TCTATCATCTATCATCTATCATCGATCGTCTATCATCGATCATCTATCAT
CTACATCTATCATCTATCATCTATCATCTATCATCTATCATCTATCATCT
ATCATCTATCATCTATCATCTATCATCTATCATCTATCATCTATCATCTA
TCATCTATCATCTATCATCTATCATCTATCATCTATCATCTATCATCTAT
CATCTATCATCTATCATCTATCATCTATCATCTATCATCTATCATCTATC
ATCTATCATCTATCATCTATCATCTATCATCTATCATCTATCATCTATCA
TCGATCATCGATCATCTATCATCTATCATCTATCATCTATCATCTATCAT
CTATCATCTATCATCTATCATCTATCATCCATCATCCATCATCGATCATC
TATCATCTATCATCTATCATCTATCATACCAGTTTTTATCGCGATGCAAG
TTCAGCGCTCTTACAACTTAACTTTCAACCTATGGTTAAATTTTACTTAA
CACACTTTTTCACGCTTTCCAATACGGAAACCAGAATAAAAATCCTGCTT
TGACAAGAATCGAACTCACGCCGTCCGCACTAATAGCAGGTGTGCGAGGT
TACCTACCAGACCACTCGGGCGACCGGGGCAGAATATCTATGTATGTATG
TATGGTCACACATATAAGCAAGAGTATGGATCAACCTGGTAAGGTTACCA
ATCCTGCTCCAAGAATATTTCCCTGTCCGCGTTCGTGCCTGAGAATTTGG
TCTCGCGAGACGGTTTCGGCTGTCACGTCTCGCGTCAGCCTGCTCATCTT
CATACTCAGGCTGAATCAGGTGCTTACTTACGGGATTCTTCCCGAGTTCC
GCGGTGGCGTCCATATGTTCATATTAAACCGCCGTACGCCATCGGGTAAG
TCGCGAGTTTATCGGGTCGCGCAATTGCGTACCGATGGCGTTCACTGCCG
AGAGTCCGTCGGCACGGGGCCAGTAAACCTCAAGGTTGTTCCGAACGATT
GCTGCCTTAGCAGGTCACCATGGACCAATTAATATTCGCCTCTCTTTCCC
ACACCCACTATTGGTATGAAGTGGGCATGTTGAAAGTAACGGCCAAATAT
GTATTTGATTGATTGATTAATTGATTGATTGAATTGTCACATAAGCTGAT
GTCAAAAATCCGGCCCGTGGCCACAAGGTAGAAAAAACATCATTCGGAAG
GAAATAACGTACGACGTACTCTCTTGCTCCGTACAAAGAGAAAGCACCGC
TTCTGTTATACTAAATACTACAGGTACTGGAAATTACATGTTATGTTGTA
TACACCAAGGAGGCAATGCCAGGGTGTCGTCCAAGGGTTGAAGGATGGAA
TGTTTGTACACCCTGGCCACAGGCAGGTTCAAACTTGGTTTTAAGACATC
AAGAAGATATGTTAGCGTCACTTCTATAAAGAGGAAGGAAGGAACCAAGG
AAGCAGAGGAAATAATCCTCAGAAGACCTTAGAAGACAAAAGACTGAAAC
AAGGGGGGTGTGTCCCTCAACATAGCATAACCCTGTAGAAGGGTGTAATG
CTTGGCAACTCCCTAGGACTATGACTATAATCCTTCCTTCCCCTTGCATG
GTATAATCTATAATGGTACTCGAATATGGAATGGAACACTTACTCACCCT
GTCATGTACTGTATCCCTGTGACGGTGAAAGCTTGTATCATTGTGACGAT
TAGCGGACTTGGATCCGTAAGCTTTTGGTCCGATAGGATACATATGTTTT
TTTTTAATGTCTCTTACCCGTTTACCCCTATTTGCTACAAAGTGCCACTG
TATTTGAGTACAAGTGTTGTCAAGTTTTGCCTTGGGAGTATATTACTATT
ACTACTACTATTACTATCGCTATTGCTATTGCTATTACCATTACTAATAC
TGTTACTGTTACTATTACTATTGCTATTACTACTACTATTACTGTTACCA
TTACTAGTACTAGTACTATTACTATTACTATTACCATTACTACTACTATT
ACTGTTACTATTACTATAACTATTACTATAACTACTATTATTGCGAGCGT
AGTGAGCTTCTAATCTGGAAGGTGCATCAATTTGGGCTCGGGTGTATCAA
AGACTGTGCACATTGACCAATCAAAATGCGAGTTCGGGATCTCGCTTTCG
TGCTGACCAATAAACATTCTGCTTACATGCGGAAGTTCTGTATTGTAGAA
ATTTTGGCGACTTGTGTGCAAAACGGGCAAGGTACGCAGACCTACTGCTG
TACATAGGTGTACAGTTAGTATGTATGTATGTATGGTCATCACGTATAGC
AAGAGTATGGATCAACCGGGTAAGGTTGCCAATCCTGCTCTATGATACTC
GTGGTCAGCTGAACAGGGAAAGTGAATATTTCTCTGTCCCCGTTCGCGCC
TGAGAATTTCGTCTCGCGAGACGGATTCGGCAGTCCCGTCCCGCATCATA
ATATAATTGACTGTTGATCCAATGCAGTTTCTGGGTTTGACTGTTGTTGT
GTACGAAGCACAGACGCATCGCCCACGCGCTCTATGGATCAAGCAGCGAC
GTTCTTGATGTTGCACTACTGGTGTTTGATACCACACCATATTATAGTGT
TGGATGTTGATCCAAACGCAGGTAGATCAATTTGCATCGCGATAAATCGG
GGAGAGATGTGAAGATTCTTAGTGACAGGATGCTGCGCATAGGGTTATGC
TGAACATTCCCGCTGTACATGTGTAGATAGACCTTCACGCTCCGCCGATG
AACAATTACACAACAATGCGCCGCATAGAAAATCCCTTCGGGAAAAGACG
ACTACCTGCTGCGTCAGACTTCTTCTTTCATTAACAATCAGGAGTGGCAC
TTTCCCGTACAGTGTTGAGGACGACGCCAGTACAACACGCCAAACACCAA
CCATACATTACACCAACACCTGTATTAAGCTGACGATAGTAACACAACTA
TCATTTAGCGAGCGTATAGCGATAGCTAACCTATCTTTACGAGTACTAGT
ACTATTACTGTTACTATTACTATTACTATTACTGTGACTATTACTATTAC
GAGTACTAATACTATTACTATTACTATTACTACTACGAATACTATTACTG
TTACTAGTACTACTACTATTACTAATACTATTACTGTTACTATTACTATT
ACTATTACTATTAATACTACTTCTATTACTATTACTATTACTATTACTAT
TTACTACTACTACTACTACTATTACTATGACTATTACTAGTACTATTACT
ATTACTACTATTACTATTATTGTTACTATTACTATAACTATTATTATACG
AAGTAACTATTACTAGTGTAGTATTCGTGACGCGTTTTTGTTTTATCATT
TATCGCCACGTTGACGCACATCAGCACGCTTTGACCTCGTCGACTGTCTC
CAGCTCGAGCTCTAGACTACAGTGCAGGTTATGGTCGAACCGTGCCTACA
TCATCACGCTGTCATCCTTGTTCAAGGTTTATTCTGTAGAGCTGAAAAGT
ACGAAATGCTAACAAAGTACTATCAATACCAAGGTACCTCCACTGCAAAC
ATATCATATTAGAATAATGGTATAGTATACTCGTGCTTGCATTACACTGT
GGTGGCCATTTCGCCATTTATAGGTATTTTACGTTGCAGTAAAGGTACTT
ATTTTACAACTTTAGGGTGCCGATGTCGTCCGATGTCGTCCCCCGGAACG
CTGTCTCTTCCGGAACCACCACTACTACTGTGGCCTACACTACTACACTA
CTACACTACTACTGTCTTGTGGCCTCAGCCTCGGCCTCGGCCCACTGTGT
TACTGGTGCTGTAGGACTATATTATGTTTTTCATCGTATGAATAGTCTAA
AAATAGTCTAGTGAGCGTTCGGTACTTGCACGCGCACGTTGTCAACCTAT
CGTATTAATATGGAGGAAATAGACCTGGCATATTCTTACTCGTGTCCTGA
CCCTTATCGTAATGCTTACTGGTATCAATGAGATCTATTATACTGCACTG
TTGTGTGCCCGGTAAAGCTCTGGTGTGTTTTTTTCCTCCTGAGAACCGAT
CTCAGGGCTAGTCTACGTCAGGGTGAGTGTAAACGTGGTTGAGCATGTCA
TATTCCCGAGGATCGAGGTCCTTAAATACACCACCAGTACGTATGAAAAA
CATTTTGATTAATTTATACCAGATTTATAGAAGTATTGCTGAGGGTCGAA
CTCACAATTTCCTCTCAAACATACTCGTTGTCAGCGAGATAACTCGACAA
CTCGACTCAGGGGCGTTAAAATGTTAACATTCATCCATTACCCCATACCA
AACCACCACACGGATAGAGCTGTAGAGCTGTTTCACGCAGTAATTTTTAC
ACTTTTATACACACAATAAACCAATCGCATCGCAATTTGCTTTGAATGAC
GGGTTTGTTCGTTTTTATATTAGCGCTATTATAGCTCTACAAGACAATGC
AATGTAATGCAATGAGAAGACCTGCCCTCGCGTCTTGGTTATATTGCCGA
TCAAGGATGGTCTAGGATGGTCTAGGTTGAATACCTGGTAGTCGGAATAA
TCCGTTTGGAGTGCAAGCTATATCCTGCACGCCCCTATAAGACCTCCAAG
CTCTTTGTCCTTTGTCTTTGTCTCAGAGACCCCCCCCCCCCCCCCCCCCC
GCCACTCTTGTGCGCTTCGCAGGCGCTCGCGAGGTCCCCTCAGCGCCCTT
CGAATGACCGGAGGAGATGCTACGGATGCCACGGAGTCAGCCAAGACTAA
GGCCCAGCGGATGGCGGAGCAGGCCGCAGCCCTCCGCGAAGGTCAGCTCC
CCCGTGACCTCCCCCAGACCAGAGTTGTGCAAGCTGGATAACGTCGTGTA
CCCCATACATCCGTCCCCGAACCTTCGCGCCAGTATAGCACTATAGGTCA
CGGTCGCGATGTGGCGATTCTCCAGTACGTACTGCACTATATACTAAAAT
TTTGAACTGCGGAGGTATGTTCTGCAGTACCATGACTGTACTGTAGTGCC
GTGAGTTTGATACTGTACTGCAGTATGTCTGTAGTACAGTATGTACCACA
AATGGTCGGAGGAGGGTGGAAGGTGTTTGTATATTCTCTAGGAGATACCA
AGCTGGGTGGGAGTGTCACTTCTGCCGGTGCCGTAAACCCGGCGTTCCTT
CCTCGGGGATGTTAAGCTAGAGCAAGCTCTACTCCGTTACACTATTTACC
TGGTAGACATCCATCCTCGCTCATGTTGGCTCGTGTCGATATCGTGCACG
CCCAATGGTGCCAGAGGCGGCGGCGAGCGAGGCGGAGCTGCGGCCGCCGG
AGAAAGCACCAGAGGGCGGCGAGCGAGCTTCGCCCGAGGTTAGGCCCGAG
GACATGCCTCCCGACATGAGGATCTCGGACAATATGAAGAGTCGCCTCAG
GCAGGAGCTGATCTCTCAGGGGGCCGATCCAAACAGGTCTGTAGGAAACC
CCATCCTCGTGGTGGCGGCGGTGATCGCGGTGCTCGTTATCATCGGAGGA
AAGGGTGAGTGAAATATTAAATTGTTTTCAATGTAATGGCCCTGCATCTG
TCTACCCAAAGTTGAACACGGGGATCTTGGGCGGCTGTCCCCGCCGCCGC
ATCTCCTCTTGCAGCCCTGATTCGTTAATTTGAAATATCTTCAACCGCTT
AGAATGTCCGAACTGAAGTTATTCAGATGCCATCATTTGCACCCTTTCCC
GTCCGGTACATGTCTTAACAACGGCCTTAACAACGAATTTGAGTCACAAA
GCTGCCGAATCGCCTGCCGGGCGGACCCTTTAAAACCAAGTCTCCATTTC
GCTTCGGTCGTGCTTTATTACGCTACTGTTTTCTCGCCACTGTCATGGTT
GCTTTGTTCTTAAACAGGTATATTCTACTAGACATCTTACGCTTCGGGGG
CAGTCGACCGGAGCTCTCTACCACCATTCCCCACAGGCTGCGAAGTGATC
GATATCGATGTGCATATACGGAGTATCTACAGTAAAGAGACTGTTGGTAC
TGTAGGTCAGTTCTTTCCTTGCCATTTGCTTTCACTTTTTTTTCCGTTTA
AGGTCCCAAGGGCGCCTGCCGAAATCTTCAAACTATAGACAAATTTATGA
AACGTGACGGGCGTGTCGAGGGTTTCAACAATTGCGCTTCGTATTAATAT
CATAGTCGGTCATACAGTATTTTGATGTTAGGTGTTTGTGTATACAGTAC
TAGTCCTAGTATCTCTGAGCTTGCACTCGTTCTGTAGAAGGTTGTTCCGT
CGCTTCAAAATCAAATCAAATCAAAACAATCGCTAAAGTTATCGGGTGTT
GGCGTAAAGTGTTTGCCTTGGGTGATTTGGTCGTTGCGTGGCTTCGGAGA
CAATCGATCGATTTAGGCAGTTTGGTTCACACTGTATATATATTCCATCG
ATTTCGGTTTTATCGCTATAAACAAACTATTCTAGAGTTAAAACGACGAT
GTCCACGGTGCCACCCCACGCCTGTGTCCTAAGTTACAATAATACGCACC
ACAGTACCACATGCTGTGTGTGCCATGCTGTGCCATAAGTAGAGCATGAA
ATTCAAGGGAGCCGTCA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1303:135704..145970+

>mRNA_F-serratus_M_contig1303.2287.1 ID=mRNA_F-serratus_M_contig1303.2287.1|Name=mRNA_F-serratus_M_contig1303.2287.1|organism=Fucus serratus male|type=CDS|length=1050bp|location=Sequence derived from alignment at F-serratus_M_contig1303:135704..145970+ (Fucus serratus male)
ATGTTCTCGCTATACGCCTGGTTCGCTTCCTATTCGTTGACTATCTTAGC
CTTGAGCTGGGAGGCTTCCTCCCTTTTATGCGGCAGCGTCAGCAGGTTGC
ATCATGGACATCCGATCACCGTGGCACCTCGGACTTCATACGCAGACCAA
CTATGTTCTCGCTATACGCCTGGTTCGCTTCCTATTCGTTGACTATCTTA
GCCTTGAGCTGGGAGGCTTCCTCCCTTTTATGCGGCAGCGTCAGCAGGTT
GCATCATGGACATCCGATCACCGTGGCACCTCGGACTTCATACGCAGACC
AACTGCGCTCGCGAGGTCCCCTCAGCGCCCTTCGAATGACCGGAGGAGAT
GCTACGGATGCCACGGAGTCAGCCAAGACTAAGGCCCAGCGGATGGCGGA
GCAGGCCGCAGCCCTCCGCGAAGGCGCTCGCGAGGTCCCCTCAGCGCCCT
TCGAATGACCGGAGGAGATGCTACGGATGCCACGGAGTCAGCCAAGACTA
AGGCCCAGCGGATGGCGGAGCAGGCCGCAGCCCTCCGCGAAGAGGCGGCG
GCGAGCGAGGCGGAGCTGCGGCCGCCGGAGAAAGCACCAGAGGGCGGCGA
GCGAGCTTCGCCCGAGGTTAGGCCCGAGGACATGCCTCCCGACATGAGGA
TCTCGGACAATATGAAGAGTCGCCTCAGGCAGGAGCTGATCTCTCAGGGG
GCCGATCCAAACAGGTCTGTAGGAAACCCCATCCTCGTGGTGGCGGCGGT
GATCGCGGTGCTCGTTATCATCGGAGGAAAGGAGGCGGCGGCGAGCGAGG
CGGAGCTGCGGCCGCCGGAGAAAGCACCAGAGGGCGGCGAGCGAGCTTCG
CCCGAGGTTAGGCCCGAGGACATGCCTCCCGACATGAGGATCTCGGACAA
TATGAAGAGTCGCCTCAGGCAGGAGCTGATCTCTCAGGGGGCCGATCCAA
ACAGGTCTGTAGGAAACCCCATCCTCGTGGTGGCGGCGGTGATCGCGGTG
CTCGTTATCATCGGAGGAAAGGGTATATTCTACTAGGTATATTCTACTAG
back to top