mRNA_F-serratus_M_contig130.2253.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig130.2253.1
Unique NamemRNA_F-serratus_M_contig130.2253.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig130.2253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig130contigF-serratus_M_contig130:570655..573849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size336
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig130.2253.1prot_F-serratus_M_contig130.2253.1Fucus serratus malepolypeptideF-serratus_M_contig130 570655..573822 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929249.934135-CDS-F-serratus_M_contig130:570654..5707341622929249.934135-CDS-F-serratus_M_contig130:570654..570734Fucus serratus maleCDSF-serratus_M_contig130 570655..570734 -
1690962768.8999798-CDS-F-serratus_M_contig130:570654..5707341690962768.8999798-CDS-F-serratus_M_contig130:570654..570734Fucus serratus maleCDSF-serratus_M_contig130 570655..570734 -
1622929249.948208-CDS-F-serratus_M_contig130:573593..5738221622929249.948208-CDS-F-serratus_M_contig130:573593..573822Fucus serratus maleCDSF-serratus_M_contig130 573594..573822 -
1690962768.9103146-CDS-F-serratus_M_contig130:573593..5738221690962768.9103146-CDS-F-serratus_M_contig130:573593..573822Fucus serratus maleCDSF-serratus_M_contig130 573594..573822 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929249.9621725-UTR-F-serratus_M_contig130:573822..5738491622929249.9621725-UTR-F-serratus_M_contig130:573822..573849Fucus serratus maleUTRF-serratus_M_contig130 573823..573849 -
1690962768.9245615-UTR-F-serratus_M_contig130:573822..5738491690962768.9245615-UTR-F-serratus_M_contig130:573822..573849Fucus serratus maleUTRF-serratus_M_contig130 573823..573849 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig130.2253.1

>prot_F-serratus_M_contig130.2253.1 ID=prot_F-serratus_M_contig130.2253.1|Name=mRNA_F-serratus_M_contig130.2253.1|organism=Fucus serratus male|type=polypeptide|length=103bp
MLPSATASAVRTSSREVPPSEKARAISSSAGSSDRGRQSITQLAQGEAND
IRVSFVAAGERKEWELSKLGGEEDREGSSFSTHVIVPWIFSMQSGTNCTI
VL*
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mRNA from alignment at F-serratus_M_contig130:570655..573849-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig130.2253.1 ID=mRNA_F-serratus_M_contig130.2253.1|Name=mRNA_F-serratus_M_contig130.2253.1|organism=Fucus serratus male|type=mRNA|length=3195bp|location=Sequence derived from alignment at F-serratus_M_contig130:570655..573849- (Fucus serratus male)
GGGTCAGACAGAGGACGAGAGAGCAGAATGTTGCCATCAGCTACAGCGTC
GGCCGTGCGTACCAGCTCCAGAGAAGTGCCCCCCTCGGAAAAAGCCCGTG
CAATTTCTTCTTCTGCTGGTAGTTCTGATCGTGGTAGACAGAGCATTACT
CAGCTGGCCCAGGGTGAGGCCAACGACATCAGGGTGTCGTTCGTGGCTGC
TGGAGAGCGAAAAGAGTGGGAGCTTAGCAAGCTCGGAGGAGAGGAGGATC
GGGAAGGTGATGGCAAGGATGCCTCGTCGCGTACTGGTCCGCCGAGCTTA
GGGAAATGTTCTCCGCCGTACTTGCTCGTTGATGGGGAAATGATTTCGGG
GGAGATACAAAATTCAATTTGAAACGAGGCTGGATTTCTTTTTCTGAACA
ACGTGAGGTTTGCAAGAGCAGACAAAGCTGGAGCTCTACAGCACCACTAC
CAATGGAGCATAGACACCAACGTATGTGGAGGCTTCACCCTAGTCATTGT
CGGTAGATGAACACAAACACAGCCCGCCATGAATGCGCTACTCTTATAAT
TTTTGTACCTGCCTACAGAACTACAGGCACCCGAATTTAGACGGAAACAG
CACCAGTAACCAACAAGTACATATGTACTACATACCTGGTACTGCTGTAC
AACAGTATATACAGTACTCGTTTCACTACTGTAGAACAGAGTATATATAC
TCGTTTCAATCTTGTATTGGATTCCTCGTTAATGATGATGTACTAGTACA
TTGTTTTTGTTTGTTGCTGTTTCTCTGGTGTCCCCGCATGGCGATTAATA
TAAGTGTACAGTATAACGGTGGGTTTCTCCCCGATATTATACTGTTGACC
CAATGCTACTACCATAATAGGGGAACCCGTTTAAATGCTATGGAGAGGTT
TTGTATTTGCAGCCTTTGAGCCGACCCGAACTTTTTGACATTTTTCCCCC
TGACTGGGGGATGCTCAGAAGGTCTAGGTGCGTTCTGTATTTCTTTTAAA
CAAGGAGAGAAGCTCCACGGTGAGACAATTAGAAGGCGGAATCACCAACG
AAACGTCTATGCCTCCCTTGAAGTGTGAATGCTTGGGCTCGGCTGCTAAA
GACAACCAACGTCGTGGGTACACACGGGCTTGGCCGCTTCTACGGTGAAC
GTAATACTCGCTCTTTCATTTCAAAAAACGCGGGCGAACCTTTATCCCGC
CACCCAAATGCGTCTGAACCTCAACCAATCATATGAGACGCCAGGGTTTA
CGTCATAATTTTTTGTTGTTGTTGCTTGAAAGTAAATTTTGTATGAACAA
GGATTGGTCCTGGGAACGGTGCGCTTATTGCCACAAACTGAACTTTTGAA
AAAATGTTTCCGAAACTGTTCAACGTAAGGCCGTTTCTTATGCGGGCGTT
TTTTCCGGGCGGAAATTGCCTATTTCCGCCCGAGCTTTTTTCCACTCGAG
ATTTTTGGTCCGCATGTCTCACGCTGGCAAAAAAAATCCGCTGGAGTTTT
GGGACTGTCAACAGTTTTTGAAAAGTTTTCTGCTACCATACGAACGCAGG
CGTTACCAATTTCCCCACACCGAACGACAGCGTACACCTGCTGCGAGACC
GCGTACACACAACAGACCACTCAGCAGACAAATATTCAACGCACGATAAT
CCAATCTCTCGTCGACGCTTATAAGCTGATAACGGTGTTGGTGTCATTGA
GCCTGCCTTTCCTAGATCTGTACTACTTGTTTGTGTGGTTTCGCGCACCA
GCAGTAGTAGTACATCAGAAAGGTCCCTCCCTACCTGATCCATAGAGCAC
ATGGGCGATGTGTCCGTGCTTTGTACACAACAACCGTCAAACCCAGAAAC
TGCTGTATTTTTGTGTCATTCATCTACCTTCGTTTGGATCAATAGCCAAT
ACTGTAATATTGTGTGGTATCAAACATCAGTACTGCAACATCAGAAACGT
CGCTGCTTAATCCACAGAGCGCGTGGGCGATGTGTCTGTGCTTTGTACAC
AACAACAGTCAAACCCAGAAACTGCTGTATTTTTGCGTCATTCATCTACC
TTCGTTTGGATCAACAGCCAATTCTATACTGACGCGGGACGGGACTGCCG
AACCCGTCTCGCGAGACGAAATTCTCAGGCGCGAACGGGGACAGAGAAGT
ATTCATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCAACCTTAGCC
GGTTGACCCATACCCTTGCTATATGTGATGACCATACATACATATATTAT
TGTGGGGTTTGTGCGGTGCAATCAGTCTCAACAAAAAACGCCCAGCGATT
TCCGCCCAGAGATCCGGGCATTTTTTGGAGCAAAAAACGCCCGGATTCTC
GGCGAAAATCGCTGGGCGTTTTTTTCCGGGCGGAAATTGCCTATTTCCGC
CAGCGTAAGACATGAATTTCTTCTCCCGGGCGTTTTTAGGCAATTTCCGC
CTGGAAATAATGCTCGCATTGGAAACGGTCTAAGAAGCGGATTTTTGGTC
TCATATTAGAAATAGCGTTTTCTGATAACATTTTCTAACAGCATAAGAAG
TGGTCTAATAATAAAGAAAAACACAAAATCACAAAATCATCGTCCGTAGC
GAGGCTGAGAGTATTTTTTTTGAAGAAAATACAGAACGTACCTAGACCTT
CTGAGCATCCCCCAGTCAGGAGGAAAAAATGTCAAAACGTTCAGGTCGGC
TCAAAGGCTGCAAATACAAAACCTATTCATGGCATTTAAACGGGTTTCCC
TATGGTAGTACCATTGGGTCAACAGTATAATATCGGGGAGAAGCCCACCG
TTGTACTGTACACTTACATTAATCGCCATGCAGGGACACCATAAAAACAG
CAAGATCACACAAGGAGGTAAGAGGCACGCGGAAAGAACTGAGTTCCTCG
CTCCAACTTGTCAGGGCTACGACGCACAGATGCTCCTCATGCTCGGACTT
AGCTATGGCCCCGCGTTGGCCACAAATACGAAGGGAAGAGCGTCTGTTTG
TAAAAAATGATCAAGTGGGCCTCAAACCACCACGTACGTGTAATCCATCA
TATGGTGACCCGAAATGCCTTCAACTCCATGTCTTTTTTCCGAACTGACG
TACTTCCCATCGAAGGTTCATCATTTTCAACCCACGTCATTGTTCCTTGG
ATCTTCTCAATGCAGAGCGGGACTAACTGTACCATTGTACTTTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig130:570655..573849-

>mRNA_F-serratus_M_contig130.2253.1 ID=mRNA_F-serratus_M_contig130.2253.1|Name=mRNA_F-serratus_M_contig130.2253.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig130:570655..573849- (Fucus serratus male)
ATGTTGCCATCAGCTACAGCGTCGGCCGTGCGTACCAGCTCCAGAGAAGT
GCCCCCCTCGGAAAAAGCCCGTGCAATTTCTTCTTCTGCTGGTAGTTCTG
ATCGTGGTAGACAGAGCATTACTCAGCTGGCCCAGGGTGAGGCCAACGAC
ATCAGGGTGTCGTTCGTGGCTGCTGGAGAGCGAAAAGAGTGGGAGCTTAG
CAAGCTCGGAGGAGAGGAGGATCGGGAAGATGTTGCCATCAGCTACAGCG
TCGGCCGTGCGTACCAGCTCCAGAGAAGTGCCCCCCTCGGAAAAAGCCCG
TGCAATTTCTTCTTCTGCTGGTAGTTCTGATCGTGGTAGACAGAGCATTA
CTCAGCTGGCCCAGGGTGAGGCCAACGACATCAGGGTGTCGTTCGTGGCT
GCTGGAGAGCGAAAAGAGTGGGAGCTTAGCAAGCTCGGAGGAGAGGAGGA
TCGGGAAGGTTCATCATTTTCAACCCACGTCATTGTTCCTTGGATCTTCT
CAATGCAGAGCGGGACTAACTGTACCATTGTACTTTAGGTTCATCATTTT
CAACCCACGTCATTGTTCCTTGGATCTTCTCAATGCAGAGCGGGACTAAC
TGTACCATTGTACTTTAG
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