mRNA_F-serratus_M_contig130.2249.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig130.2249.1
Unique NamemRNA_F-serratus_M_contig130.2249.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig130.2249.1 vs. uniprot
Match: D8LT81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT81_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.860e-5
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:    1 LSSDSAALQRKLAEHTEVVYRARSLADAIASAPGTDTREAQEALDLKELFDRVTDRTGSGSGSRVPRSAKDNATAA 228
            +++D A+LQRKLAEH +V+ + R+LAD + +AP   T + Q A + KEL D V +  G   G +  RS K  A AA
Sbjct:    1 MAADIASLQRKLAEHADVIRQGRALADKVVAAPDAGTPQVQAAQNFKELSDNVANARGDNRGKK--RSPKGQAAAA 74
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig130.2249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT81_ECTSI1.860e-543.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig130contigF-serratus_M_contig130:505860..507108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size842
Cds size840
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929249.8848822-CDS-F-serratus_M_contig130:505859..5059431622929249.8848822-CDS-F-serratus_M_contig130:505859..505943Fucus serratus maleCDSF-serratus_M_contig130 505860..505943 +
1690962768.8740606-CDS-F-serratus_M_contig130:505859..5059431690962768.8740606-CDS-F-serratus_M_contig130:505859..505943Fucus serratus maleCDSF-serratus_M_contig130 505860..505943 +
1622929249.8956168-CDS-F-serratus_M_contig130:506350..5071061622929249.8956168-CDS-F-serratus_M_contig130:506350..507106Fucus serratus maleCDSF-serratus_M_contig130 506351..507106 +
1690962768.8880112-CDS-F-serratus_M_contig130:506350..5071061690962768.8880112-CDS-F-serratus_M_contig130:506350..507106Fucus serratus maleCDSF-serratus_M_contig130 506351..507106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig130.2249.1prot_F-serratus_M_contig130.2249.1Fucus serratus malepolypeptideF-serratus_M_contig130 505860..507106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig130.2249.1

>prot_F-serratus_M_contig130.2249.1 ID=prot_F-serratus_M_contig130.2249.1|Name=mRNA_F-serratus_M_contig130.2249.1|organism=Fucus serratus male|type=polypeptide|length=280bp
LSSDSAALQRKLAEHTEVVYRARSLADAIASAPGTDTREAQEALDLKELF
DRVTDRTGSGSGSRVPRSAKDNATAATLKGTPGGNLPGSTSSGDTLRAPT
IPFEATSGEGLGGNLHHPSDNVASGHGQRLLESNSSRPNKNVSGGGKGDH
TRRSGLFPASMNQGSFNETRERNKPDPLAVDSSFPERSMNAVDDASDHTK
IAADTATRGETQASPISMGIGVNPPSVRDTAASRNTIPAQHVETGGSNDT
CSDAEKGGDALITDSLPPYFQDHITTSTIP
back to top

mRNA from alignment at F-serratus_M_contig130:505860..507108+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig130.2249.1 ID=mRNA_F-serratus_M_contig130.2249.1|Name=mRNA_F-serratus_M_contig130.2249.1|organism=Fucus serratus male|type=mRNA|length=1249bp|location=Sequence derived from alignment at F-serratus_M_contig130:505860..507108+ (Fucus serratus male)
TTATCATCTGACTCCGCCGCCCTGCAAAGGAAGCTTGCCGAGCATACCGA
AGTCGTCTACCGCGCTCGTTCGCTCGCCGACGCGGTACGTACCTGAAACG
GGTTCGAGCACGAGGGGTTACCGCGCGGGTGGAGCACTTGTGGTGAATTT
ACTTGTGAAGCTACTGTACGTTCTACGACTTCCACAAACTTTCGAGTAGA
CTGAAACCCACAGCAGGACATTAAAACGATACCTTCCGGTGATCGTCACC
AAGTAAATATGCGCTCTCCGGCGCCGCCAGGCAGCGTACGGCCCCCAATC
TCTTGCGCGGGGACAACATCGCCTATTGCCCTCCCTCCCGTTTTTATTAA
ACACAACCGCACAACAACGACGCAAACCCATGCTCCCGTCTTGCCGCCAT
ATTTGACTTGGAAATATGTTTCACCATTTTTGACGAGCGCCCTGTTTTGG
TCGTGATTTTCTCTGCAACCGTGTCCCCGCGCTCCCACCAGATTGCCAGC
GCGCCTGGTACCGACACCCGCGAGGCTCAGGAGGCCCTAGACCTAAAAGA
GCTGTTTGACAGGGTCACCGATAGGACTGGGAGTGGATCCGGAAGCCGTG
TACCCAGGTCAGCAAAGGATAACGCTACGGCTGCGACTCTCAAAGGGACT
CCTGGTGGGAATTTACCTGGGTCGACATCGTCCGGGGACACCCTTCGAGC
ACCCACGATCCCGTTTGAAGCCACCAGTGGTGAAGGGTTAGGTGGTAACT
TACATCATCCAAGTGATAACGTCGCATCAGGCCATGGGCAAAGGCTCCTC
GAGAGCAACAGCTCCCGTCCTAATAAAAATGTCTCAGGCGGGGGCAAAGG
AGACCATACTCGTCGTTCAGGGTTGTTTCCAGCATCGATGAATCAGGGAT
CCTTCAACGAGACTAGGGAAAGGAACAAGCCCGATCCGTTGGCCGTAGAC
TCTAGCTTTCCGGAGCGATCAATGAACGCGGTAGACGACGCATCTGACCA
TACTAAAATTGCCGCTGATACAGCTACCAGAGGAGAAACTCAAGCATCGC
CGATATCGATGGGAATCGGTGTAAACCCTCCCAGCGTCCGCGACACTGCA
GCTTCACGCAACACAATCCCTGCTCAACACGTTGAGACCGGAGGCAGTAA
TGACACGTGCAGTGACGCAGAGAAGGGTGGCGACGCGTTGATCACAGACT
CCTTGCCCCCGTATTTTCAAGATCATATCACCACGTCGACTATCCCAGG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig130:505860..507108+

>mRNA_F-serratus_M_contig130.2249.1 ID=mRNA_F-serratus_M_contig130.2249.1|Name=mRNA_F-serratus_M_contig130.2249.1|organism=Fucus serratus male|type=CDS|length=1680bp|location=Sequence derived from alignment at F-serratus_M_contig130:505860..507108+ (Fucus serratus male)
TTATCATCTGACTCCGCCGCCCTGCAAAGGAAGCTTGCCGAGCATACCGA
AGTCGTCTACCGCGCTCGTTCGCTCGCCGACGCGTTATCATCTGACTCCG
CCGCCCTGCAAAGGAAGCTTGCCGAGCATACCGAAGTCGTCTACCGCGCT
CGTTCGCTCGCCGACGCGATTGCCAGCGCGCCTGGTACCGACACCCGCGA
GGCTCAGGAGGCCCTAGACCTAAAAGAGCTGTTTGACAGGGTCACCGATA
GGACTGGGAGTGGATCCGGAAGCCGTGTACCCAGGTCAGCAAAGGATAAC
GCTACGGCTGCGACTCTCAAAGGGACTCCTGGTGGGAATTTACCTGGGTC
GACATCGTCCGGGGACACCCTTCGAGCACCCACGATCCCGTTTGAAGCCA
CCAGTGGTGAAGGGTTAGGTGGTAACTTACATCATCCAAGTGATAACGTC
GCATCAGGCCATGGGCAAAGGCTCCTCGAGAGCAACAGCTCCCGTCCTAA
TAAAAATGTCTCAGGCGGGGGCAAAGGAGACCATACTCGTCGTTCAGGGT
TGTTTCCAGCATCGATGAATCAGGGATCCTTCAACGAGACTAGGGAAAGG
AACAAGCCCGATCCGTTGGCCGTAGACTCTAGCTTTCCGGAGCGATCAAT
GAACGCGGTAGACGACGCATCTGACCATACTAAAATTGCCGCTGATACAG
CTACCAGAGGAGAAACTCAAGCATCGCCGATATCGATGGGAATCGGTGTA
AACCCTCCCAGCGTCCGCGACACTGCAGCTTCACGCAACACAATCCCTGC
TCAACACGTTGAGACCGGAGGCAGTAATGACACGTGCAGTGACGCAGAGA
AGGGTGGCGACGCGTTGATCACAGACTCCTTGCCCCCGTATTTTCAAGAT
CATATCACCACGTCGACTATCCCAATTGCCAGCGCGCCTGGTACCGACAC
CCGCGAGGCTCAGGAGGCCCTAGACCTAAAAGAGCTGTTTGACAGGGTCA
CCGATAGGACTGGGAGTGGATCCGGAAGCCGTGTACCCAGGTCAGCAAAG
GATAACGCTACGGCTGCGACTCTCAAAGGGACTCCTGGTGGGAATTTACC
TGGGTCGACATCGTCCGGGGACACCCTTCGAGCACCCACGATCCCGTTTG
AAGCCACCAGTGGTGAAGGGTTAGGTGGTAACTTACATCATCCAAGTGAT
AACGTCGCATCAGGCCATGGGCAAAGGCTCCTCGAGAGCAACAGCTCCCG
TCCTAATAAAAATGTCTCAGGCGGGGGCAAAGGAGACCATACTCGTCGTT
CAGGGTTGTTTCCAGCATCGATGAATCAGGGATCCTTCAACGAGACTAGG
GAAAGGAACAAGCCCGATCCGTTGGCCGTAGACTCTAGCTTTCCGGAGCG
ATCAATGAACGCGGTAGACGACGCATCTGACCATACTAAAATTGCCGCTG
ATACAGCTACCAGAGGAGAAACTCAAGCATCGCCGATATCGATGGGAATC
GGTGTAAACCCTCCCAGCGTCCGCGACACTGCAGCTTCACGCAACACAAT
CCCTGCTCAACACGTTGAGACCGGAGGCAGTAATGACACGTGCAGTGACG
CAGAGAAGGGTGGCGACGCGTTGATCACAGACTCCTTGCCCCCGTATTTT
CAAGATCATATCACCACGTCGACTATCCCA
back to top