mRNA_F-serratus_M_contig130.2248.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig130.2248.1
Unique NamemRNA_F-serratus_M_contig130.2248.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig130.2248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig130contigF-serratus_M_contig130:504018..505587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size420
Cds size417
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig130.2248.1prot_F-serratus_M_contig130.2248.1Fucus serratus malepolypeptideF-serratus_M_contig130 504021..505587 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929249.673817-UTR-F-serratus_M_contig130:504017..5040201622929249.673817-UTR-F-serratus_M_contig130:504017..504020Fucus serratus maleUTRF-serratus_M_contig130 504018..504020 +
1690962768.8289893-UTR-F-serratus_M_contig130:504017..5040201690962768.8289893-UTR-F-serratus_M_contig130:504017..504020Fucus serratus maleUTRF-serratus_M_contig130 504018..504020 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929249.684536-CDS-F-serratus_M_contig130:504020..5040561622929249.684536-CDS-F-serratus_M_contig130:504020..504056Fucus serratus maleCDSF-serratus_M_contig130 504021..504056 +
1690962768.8407764-CDS-F-serratus_M_contig130:504020..5040561690962768.8407764-CDS-F-serratus_M_contig130:504020..504056Fucus serratus maleCDSF-serratus_M_contig130 504021..504056 +
1622929249.7022123-CDS-F-serratus_M_contig130:504543..5046461622929249.7022123-CDS-F-serratus_M_contig130:504543..504646Fucus serratus maleCDSF-serratus_M_contig130 504544..504646 +
1690962768.8490453-CDS-F-serratus_M_contig130:504543..5046461690962768.8490453-CDS-F-serratus_M_contig130:504543..504646Fucus serratus maleCDSF-serratus_M_contig130 504544..504646 +
1622929249.7216327-CDS-F-serratus_M_contig130:504847..5050621622929249.7216327-CDS-F-serratus_M_contig130:504847..505062Fucus serratus maleCDSF-serratus_M_contig130 504848..505062 +
1690962768.8571794-CDS-F-serratus_M_contig130:504847..5050621690962768.8571794-CDS-F-serratus_M_contig130:504847..505062Fucus serratus maleCDSF-serratus_M_contig130 504848..505062 +
1622929249.735734-CDS-F-serratus_M_contig130:505524..5055871622929249.735734-CDS-F-serratus_M_contig130:505524..505587Fucus serratus maleCDSF-serratus_M_contig130 505525..505587 +
1690962768.8656814-CDS-F-serratus_M_contig130:505524..5055871690962768.8656814-CDS-F-serratus_M_contig130:505524..505587Fucus serratus maleCDSF-serratus_M_contig130 505525..505587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig130.2248.1

>prot_F-serratus_M_contig130.2248.1 ID=prot_F-serratus_M_contig130.2248.1|Name=mRNA_F-serratus_M_contig130.2248.1|organism=Fucus serratus male|type=polypeptide|length=139bp
MVDMTKKINATKEDLLSAESTDVSDGRSTPGINTIEDQPYPTLASIESGS
DDLNLDDKERKDGAATKGDNSSHGTEAGGIDEDEVLTKLLDTRTLPVIFE
AGHQTLLDKFLISRDKNKTRREVATKTTHSSPPSCPECT
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mRNA from alignment at F-serratus_M_contig130:504018..505587+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig130.2248.1 ID=mRNA_F-serratus_M_contig130.2248.1|Name=mRNA_F-serratus_M_contig130.2248.1|organism=Fucus serratus male|type=mRNA|length=1570bp|location=Sequence derived from alignment at F-serratus_M_contig130:504018..505587+ (Fucus serratus male)
TTGATGGTAGACATGACGAAGAAGATTAATGCTACCAAGGTAATCGAAAT
CTACGTACTGTGGTGAAAACGATGTTGAGATGCCATAACTACCGCGCAAA
AAAATGCCGTGCATAACTCTGAGAGAACATTTCTGTATTTCGAGGATCGA
AGTCTGATAGAAACTTTCAAGGGCTTACACAGATTCGAAATTCTGTTATT
ATGATGGTACTTACTGTAGTGCTTATAACGAGGTAACGCCACCCCTTGAT
GAACGCGTTCTTGGAACGAAAAAAATCTAATGCGAAAATACGGTCCCCAT
TGTGATTGACGTACTCTAGGTGGTAATTAAAGCTTCAGATTGCTGCCTTC
TGGGTATTTTCGGCATAGATGTAATGATATGCTTATATTTTTCCAATGTC
GATCGAGGCCTCATGAATTCCATCAGGGCTGATCTCGTTCGGGACGGCTC
TAGGATAGGTGTAATGAGTACATCTAGCGAGGACCGACGACAAAAAATAA
CGTCGATCTTGTCCACGTTGTAACAGGAGGATTTGCTGTCGGCGGAATCC
ACGGATGTCAGTGATGGGCGCAGTACTCCAGGAATTAACACCATCGAGGA
TCAGCCTTACCCCACCCTGGCTTCAATAGGTGAATTAACTCTCCGGTCCC
CATACGTTCTGGCAGAAATACGATTACTTCCATAAGAAGGGTAGAACCAG
AGGCATATAGATAGTTTATTGATAGGACTACCCACAGACGGGGACGGTCA
GCCGAGCGAACAAGCATTGTCGAGACAGTTGTCTGGTATGATCGCTCCGC
GGACTGTGCCCGGCGGGAATGATCGTTCAGAATCGGGAAGTGATGACCTC
AACCTCGATGATAAGGAACGCAAGGATGGCGCAGCGACAAAGGGAGACAA
TTCCAGCCATGGGACGGAAGCGGGAGGCATCGATGAAGATGAGGTGCTCA
CCAAGCTTTTGGACACGAGAACCCTGCCGGTGATCTTCGAAGCCGGCCAC
CAAACACTTCTGGACAAGTTTCTGATATCTCGGGACAAAAACAAAGTAAG
GATTGTCCAAATCCAGACCACCGTACGCTCCCAATAACCCATGGACAGTA
GAGTGGCAAGATCTCCTTTAAAACTATTTCTCATTTGTCTACGATTCCGT
GTGGTCAGCCGGTCAAGAGTACTGCATGGTACAAAGGCGAGAGCTTTCCG
CTGAGAACGTTGGAAGCCGGGCGCCACTTTGCTAATAATAGAGCAACCCT
TGCCATCCAACATCCCTTGAACCATGCTACGAGTACTGCCTGGATGTGCG
TCCAAGAGTCTAACTGTAAGGAAACACCTACATGAATTTAACGGTGGCGT
ATACAAACCCGCTACGGAGGAAAAAAAACACTCCAAGACTGGTCATAAAC
TAAATTGTCGCGCACTCCTGGGAGTACCCTGAATCCTCTTCCCAAAGTAT
TCATCAGATGAAAACCGCGCGTATACCAAGCGCAATTGTTTATTTTATCT
TGTCCAGACACGTAGAGAAGTTGCGACGAAGACGACCCACTCTTCACCGC
CAAGCTGCCCAGAATGTACC
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Coding sequence (CDS) from alignment at F-serratus_M_contig130:504018..505587+

>mRNA_F-serratus_M_contig130.2248.1 ID=mRNA_F-serratus_M_contig130.2248.1|Name=mRNA_F-serratus_M_contig130.2248.1|organism=Fucus serratus male|type=CDS|length=834bp|location=Sequence derived from alignment at F-serratus_M_contig130:504018..505587+ (Fucus serratus male)
ATGGTAGACATGACGAAGAAGATTAATGCTACCAAGATGGTAGACATGAC
GAAGAAGATTAATGCTACCAAGGAGGATTTGCTGTCGGCGGAATCCACGG
ATGTCAGTGATGGGCGCAGTACTCCAGGAATTAACACCATCGAGGATCAG
CCTTACCCCACCCTGGCTTCAATAGGAGGATTTGCTGTCGGCGGAATCCA
CGGATGTCAGTGATGGGCGCAGTACTCCAGGAATTAACACCATCGAGGAT
CAGCCTTACCCCACCCTGGCTTCAATAGAATCGGGAAGTGATGACCTCAA
CCTCGATGATAAGGAACGCAAGGATGGCGCAGCGACAAAGGGAGACAATT
CCAGCCATGGGACGGAAGCGGGAGGCATCGATGAAGATGAGGTGCTCACC
AAGCTTTTGGACACGAGAACCCTGCCGGTGATCTTCGAAGCCGGCCACCA
AACACTTCTGGACAAGTTTCTGATATCTCGGGACAAAAACAAAAATCGGG
AAGTGATGACCTCAACCTCGATGATAAGGAACGCAAGGATGGCGCAGCGA
CAAAGGGAGACAATTCCAGCCATGGGACGGAAGCGGGAGGCATCGATGAA
GATGAGGTGCTCACCAAGCTTTTGGACACGAGAACCCTGCCGGTGATCTT
CGAAGCCGGCCACCAAACACTTCTGGACAAGTTTCTGATATCTCGGGACA
AAAACAAAACACGTAGAGAAGTTGCGACGAAGACGACCCACTCTTCACCG
CCAAGCTGCCCAGAATGTACCACACGTAGAGAAGTTGCGACGAAGACGAC
CCACTCTTCACCGCCAAGCTGCCCAGAATGTACC
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