mRNA_F-serratus_M_contig130.2245.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig130.2245.1 vs. uniprot
Match: D8LT85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT85_ECTSI) HSP 1 Score: 152 bits (385), Expect = 3.260e-34 Identity = 229/893 (25.64%), Postives = 342/893 (38.30%), Query Frame = 3
Query: 957 LAVTPVEFAGGECTIIVLDLDKDEVHVHRLSRKRGR-SCHEVASLVKISASVANRNSGVVILRRSDRHFITVGQGAWRELCGQSTAHQQRVWAASGVGRIVNSESSIA--TSILKADEGCRTSGRSEDFERGSDRRVTLTPGRQRCHRHPEYILGNPPTKEARLTRSNDYKNLYR-SIVPVAPRRFFKNAR---STSEGG-----APSSGHEVIEDVSFDATGQ-RDDCVHKKWQGEASVEPTRIGRYDGLDSV---------------CGSLPRPSRPPWA---------------------TPRTAARPRIASALLYYK-VSLPTTEFMASENGS-----LAPYAT-----DGN-------------KAADSLSSR-EPIFVTEVPVPGKRLGTATQITATGSVRRSVPSVAHQTWQPKEHDNISVSIISNSVESFHCHRSCSRGDGNNLFCRRGGGIENSLHEISQSGRLFSLSCDMSLADPAH--------PFNSTVSA-PKRWTLVSTIPVKRTTGFGGAGRLPPPCTSNTSTPTQPVLPAVKTGTSYDGYENQQINRVRVAKSKLNAINIF-----GGKSRNKREGGEGGRSTPKKNWIQIRDARAAAGILMHASARGLAADDDGREIELEANDRERRGTECRDSMSIWSESSEDLFDEEDDITSVIDGDLDRSNHIELYSSSXXXXXXXXXXGVGAATRDICNDGDTVGSHDGEHDDAGTVCGSRSSRGVDTVGRNINEAWSQDDIDGPTFVKSGWLGSNSGAHSPRRAAIKRQPSFDMINDYAPKNVVTTMSILLVGLQDGIQEVLSELCEKAMPGVDLQKVPDVSGAVQTIRIIPPSLVVVAWAALGTAKIARELLGDGLGGIKSISPGLPVAVVGGENDGKGL 3371
+A+TPVE+AGGE T + LDLD+ +HV+ +R GR H V L K+SASVA RN +V+LR S RH T+GQGAWR++ G++ AH++R+ A S + S+A T +L + G L PG PE + EA R+ R S VP + RR+F+ A ++ GG + + V+ DA+ + R + W A+ E R G DG+ + G+L RP+ P A P AS L + VS T+ A G + PYA DG +A S+++ + +TE KR G T + A S + + ++ S + + E+ R DGN C H +Q G A PAH PFN+ P+RWTLV+ I K TT G P N S + + + G + R + K++ NA+ + +R R KK W +++ AR LM+A G S+++ D+E C++G+ G G G+R RG R I +A G NS + R A + + + SI++ GLQ+ +Q+ L++ + +P V+++ V DV+ +QT++I+PPSLV+VAWAA +AK AR+ LGDG G++ I PGLPVAVVGGENDG+G+
Sbjct: 2 VAMTPVEYAGGERTEVALDLDRGNLHVYHAARGEGRRDNHRVVPLSKVSASVAKRNPKLVVLRWSGRHLATIGQGAWRDVSGRNAAHRKRLKAVSITSSTAWNTGSVAKETPLLPSSSAAAAGA-------GVASAGWLNPG-------PEDDVDKNFAIEAFSVRARSGNRSSRPSRVPSSARRYFRQALPAVASGSGGDRGTISAQGNNSYSSSVACDASLEPRPVRAPRGWPSMAATEGARTGAGDGVAAAPDKGVRFPSSQGCDSSGALLRPTPPAHARNISQSWRFTTCPPEERGANSAPTVGVACSRASPLWTTRTVSACRTDGAAMTQGGEEDDWVPPYANQDDELDGXXXXXXXXXXXXXXRAMKSIAAALKQAQLTEGDDGKKRDGNPTFVAALSSA-----------FAKRVVTGVTASAV--AAEARAQQEGIDR-DGNEDEC-------GDRHIAAQDG-----------AAPAHGIGHGHPAPFNAEAGILPRRWTLVNKIRAKSTTTPGA----PQGHIGNGSVASNGKI-------AMAGVTRKPSKRWHMVKAETNAVKAYRRAQVAASTRAARH------KASKKQWGELKVARITTSYLMNALMVG----------------------------------SDEIDDDEPS----------------------------------------CSEGEERGVGRGGS-------GNRPRRGR----REIGDA------------AGGSASENSSSIWSRTAELGK--------------LFFAGSIVIAGLQEPVQKQLADQFVRDIPNVEVRIVADVASTIQTVQIMPPSLVLVAWAAFSSAKFARDFLGDGARGLRGIKPGLPVAVVGGENDGEGM 720 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig130.2245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig130.2245.1 >prot_F-serratus_M_contig130.2245.1 ID=prot_F-serratus_M_contig130.2245.1|Name=mRNA_F-serratus_M_contig130.2245.1|organism=Fucus serratus male|type=polypeptide|length=1104bp MKRRSSHSEKRSRASGPVKPKQNGAVGDLADDSTINLDAGSSVELRTIIYback to top mRNA from alignment at F-serratus_M_contig130:338669..347418+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig130.2245.1 ID=mRNA_F-serratus_M_contig130.2245.1|Name=mRNA_F-serratus_M_contig130.2245.1|organism=Fucus serratus male|type=mRNA|length=8750bp|location=Sequence derived from alignment at F-serratus_M_contig130:338669..347418+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig130:338669..347418+ >mRNA_F-serratus_M_contig130.2245.1 ID=mRNA_F-serratus_M_contig130.2245.1|Name=mRNA_F-serratus_M_contig130.2245.1|organism=Fucus serratus male|type=CDS|length=6624bp|location=Sequence derived from alignment at F-serratus_M_contig130:338669..347418+ (Fucus serratus male)back to top |