mRNA_F-serratus_M_contig130.2244.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig130.2244.1
Unique NamemRNA_F-serratus_M_contig130.2244.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig130.2244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig130contigF-serratus_M_contig130:336551..338612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size431
Cds size429
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig130.2244.1prot_F-serratus_M_contig130.2244.1Fucus serratus malepolypeptideF-serratus_M_contig130 336551..338610 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929249.6120582-CDS-F-serratus_M_contig130:336550..3366401622929249.6120582-CDS-F-serratus_M_contig130:336550..336640Fucus serratus maleCDSF-serratus_M_contig130 336551..336640 +
1690962768.8021677-CDS-F-serratus_M_contig130:336550..3366401690962768.8021677-CDS-F-serratus_M_contig130:336550..336640Fucus serratus maleCDSF-serratus_M_contig130 336551..336640 +
1622929249.6225734-CDS-F-serratus_M_contig130:337736..3377991622929249.6225734-CDS-F-serratus_M_contig130:337736..337799Fucus serratus maleCDSF-serratus_M_contig130 337737..337799 +
1690962768.8102777-CDS-F-serratus_M_contig130:337736..3377991690962768.8102777-CDS-F-serratus_M_contig130:337736..337799Fucus serratus maleCDSF-serratus_M_contig130 337737..337799 +
1622929249.6345959-CDS-F-serratus_M_contig130:338334..3386101622929249.6345959-CDS-F-serratus_M_contig130:338334..338610Fucus serratus maleCDSF-serratus_M_contig130 338335..338610 +
1690962768.817681-CDS-F-serratus_M_contig130:338334..3386101690962768.817681-CDS-F-serratus_M_contig130:338334..338610Fucus serratus maleCDSF-serratus_M_contig130 338335..338610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig130.2244.1

>prot_F-serratus_M_contig130.2244.1 ID=prot_F-serratus_M_contig130.2244.1|Name=mRNA_F-serratus_M_contig130.2244.1|organism=Fucus serratus male|type=polypeptide|length=143bp
IRWESTRLERQERRRRKALGNKKSKKSQEEAVNIMTELHEMADLVILERQ
QIEHEKEIERARLARLRLQRQEELLTVGQANGTGNDSIIARVLSKPRFGS
IVAAIAPSSEEEVQEVHRSVISKTEQKESKESKKSMLTHRRKL
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mRNA from alignment at F-serratus_M_contig130:336551..338612+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig130.2244.1 ID=mRNA_F-serratus_M_contig130.2244.1|Name=mRNA_F-serratus_M_contig130.2244.1|organism=Fucus serratus male|type=mRNA|length=2062bp|location=Sequence derived from alignment at F-serratus_M_contig130:336551..338612+ (Fucus serratus male)
ATTCGTTGGGAGTCCACCCGCCTCGAAAGACAAGAGCGTCGTAGAAGGAA
AGCCCTTGGAAACAAAAAGTCAAAGAAATCACAGGAAGAGGTACGCGTGG
TCATTGTTCAAGTAGGGGGGCTTTTATTGTGCTTGTTCCCAAGATTAGCT
GCGATTTTGTTTTGGTCTACCTTTCTAAGTACGTCACGATTCCTGGAAAC
ATGAGCAACTACTACAGCAGTTCATACATGGACTATATTTTTATGTCGAA
ATCCAGAATTCTCACAGAAGCTGATGTCAAAATCCTGCCCGTGGTCACAA
TGTATAACGGTGGGCTTCTCCCCGATGTTATACTGTTGATCCTATGTGAC
TGACTGTATTGGGGAAACCTTTTAATACCGTGTACCTAGAGCTTTTGTTC
CTACAGCCAATGTTTCCACCTAAACCTTTTGACTGCGCTCATATTTATTC
TTTACACACACATCTGGAAGGAAAATGTAATGGTACCAAATATAATACTC
GGAAAAGTGATATCTCCAAAGAAACAAAAAATCAATGTTACTTGTACTAC
CATATCGGATTAAATGCCATGAAAAGGTTTTTTAAAGAAAAATCTTGTAT
TTTCAGCCTATGAATCATATGATCCAGGCTCATCGTGACGATTGTGTTTG
TTTTGCTTGATGCCCCTGTATTGTGATTAATGTAAGTGTACAGTAGTAGT
AGTATAACGGCGGGTTTCTCCCCGATATGGTACTTGTTGACCCCCTATGC
TATTATACTACCATCCGGAAATCCGATTAAATGCCATGAAGATTTTTGTC
TTTGCAGCCTATGATCCCACCTGAACGTTTAGACATATTTCCCCCCTTTT
GGGGGATGCTCCGAAGGTCAAGACGCGTTCAGGTTTTTCTTTAAAAAAGG
ACACATATAAACAGTTGACTGCGTGTGGCTGCCGGGGGGCATGCACCTCG
AAGAACGATTATTGGACTAAAGGCCGTGGATGCACATTATATATAAATGA
GTTCGGACGGAAAGATATGGATGCTCGGAGCACTACAAGAATTACTGTTT
TTTTTTGTAATTCGAGGGTGCTTACGGAGATTTCAACAAAACAATAACGT
GATAGTGGTCAAGTAGTATTCATAGTACATGGAACACTATGATAGCGTGT
ACTCTCGGGTGGTGCCGGATACATTTCCCACGACAGGCTGTCAATATAAT
GACCGAGCTTCATGAGATGGCCGACTTGGTGATACTGGAACGACAACAAG
TGAGCCAATGCACGCACCGTTAATGTCTAATAAAGGGAAACAAAATTGAT
CTTTTGAGACCACCAAACATACTTGGCTGGACTCCGGAACTCCAAGATAT
ACTTTACGAAAATGGCAACGACGACTCGCTTCTAACTTACAACGCCTATC
GCGTTTGCCATACCCACGGTGTAGATCGGCGTGGTCGTCTTAAAAAACCG
ACCGCCAGGGTAATTAGAGAGCAGCTTTCCCAAGGACTTTGTTGGCGGGA
TGCAATACACCTTTTGACGAACAAAAATCCCGCAAAGTTTTCTTGACACC
CGCTCAAAAAAAGGGAACATAGTCGCATTCGCGCTCACATCTTTCTAGGG
ACATAGCTTGCTAAGTGTACCTGTATATGCTTCCTGGACCCTATCGTTAT
TTTTTTTTACCTCGAGGTATAATTACCATCTACCAAGCTTGCACTGTGCG
CACGTATTATGCCAAAATTACAGTCTCTTGGGTAAAAAATATCGGAGGTT
CCGATGCTCGTTGTGGCGTGTAACTGTATACCAGATCGAACATGAAAAGG
AGATAGAGCGTGCAAGGCTAGCTAGGCTCAGATTGCAAAGACAAGAAGAG
CTTCTCACGGTTGGACAGGCAAACGGAACCGGTAATGACAGCATTATTGC
TAGAGTTTTATCGAAACCACGTTTTGGTTCGATCGTGGCGGCAATAGCTC
CGAGTTCAGAGGAGGAGGTCCAAGAGGTTCACAGGAGCGTTATCAGCAAA
ACAGAGCAGAAGGAATCAAAGGAGAGCAAAAAAAGCATGCTGACCCACAG
AAGAAAGCTCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig130:336551..338612+

>mRNA_F-serratus_M_contig130.2244.1 ID=mRNA_F-serratus_M_contig130.2244.1|Name=mRNA_F-serratus_M_contig130.2244.1|organism=Fucus serratus male|type=CDS|length=858bp|location=Sequence derived from alignment at F-serratus_M_contig130:336551..338612+ (Fucus serratus male)
ATTCGTTGGGAGTCCACCCGCCTCGAAAGACAAGAGCGTCGTAGAAGGAA
AGCCCTTGGAAACAAAAAGTCAAAGAAATCACAGGAAGAGATTCGTTGGG
AGTCCACCCGCCTCGAAAGACAAGAGCGTCGTAGAAGGAAAGCCCTTGGA
AACAAAAAGTCAAAGAAATCACAGGAAGAGGCTGTCAATATAATGACCGA
GCTTCATGAGATGGCCGACTTGGTGATACTGGAACGACAACAAGCTGTCA
ATATAATGACCGAGCTTCATGAGATGGCCGACTTGGTGATACTGGAACGA
CAACAAATCGAACATGAAAAGGAGATAGAGCGTGCAAGGCTAGCTAGGCT
CAGATTGCAAAGACAAGAAGAGCTTCTCACGGTTGGACAGGCAAACGGAA
CCGGTAATGACAGCATTATTGCTAGAGTTTTATCGAAACCACGTTTTGGT
TCGATCGTGGCGGCAATAGCTCCGAGTTCAGAGGAGGAGGTCCAAGAGGT
TCACAGGAGCGTTATCAGCAAAACAGAGCAGAAGGAATCAAAGGAGAGCA
AAAAAAGCATGCTGACCCACAGAAGAAAGCTCATCGAACATGAAAAGGAG
ATAGAGCGTGCAAGGCTAGCTAGGCTCAGATTGCAAAGACAAGAAGAGCT
TCTCACGGTTGGACAGGCAAACGGAACCGGTAATGACAGCATTATTGCTA
GAGTTTTATCGAAACCACGTTTTGGTTCGATCGTGGCGGCAATAGCTCCG
AGTTCAGAGGAGGAGGTCCAAGAGGTTCACAGGAGCGTTATCAGCAAAAC
AGAGCAGAAGGAATCAAAGGAGAGCAAAAAAAGCATGCTGACCCACAGAA
GAAAGCTC
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