mRNA_F-serratus_M_contig130.2235.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig130.2235.1
Unique NamemRNA_F-serratus_M_contig130.2235.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig130.2235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig130contigF-serratus_M_contig130:174468..174888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size423
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929250.8700485-CDS-F-serratus_M_contig130:174467..1748451622929250.8700485-CDS-F-serratus_M_contig130:174467..174845Fucus serratus maleCDSF-serratus_M_contig130 174468..174845 +
1690962769.1423771-CDS-F-serratus_M_contig130:174467..1748451690962769.1423771-CDS-F-serratus_M_contig130:174467..174845Fucus serratus maleCDSF-serratus_M_contig130 174468..174845 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929250.8834157-UTR-F-serratus_M_contig130:174845..1748881622929250.8834157-UTR-F-serratus_M_contig130:174845..174888Fucus serratus maleUTRF-serratus_M_contig130 174846..174888 +
1690962769.1502218-UTR-F-serratus_M_contig130:174845..1748881690962769.1502218-UTR-F-serratus_M_contig130:174845..174888Fucus serratus maleUTRF-serratus_M_contig130 174846..174888 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig130.2235.1prot_F-serratus_M_contig130.2235.1Fucus serratus malepolypeptideF-serratus_M_contig130 174468..174845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig130.2235.1

>prot_F-serratus_M_contig130.2235.1 ID=prot_F-serratus_M_contig130.2235.1|Name=mRNA_F-serratus_M_contig130.2235.1|organism=Fucus serratus male|type=polypeptide|length=126bp
TGLDILGGHDCGSPVVAEYCGPFLHFGYRGFRIGSRICLCISRDKLSNWG
DLIDSLAFFRFNFSGKFSARRGNLLASASTNPILGYVGGCDRSPGVSLHA
FLGHLGGSARFDGLPSYNTSVGTSG*
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mRNA from alignment at F-serratus_M_contig130:174468..174888+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig130.2235.1 ID=mRNA_F-serratus_M_contig130.2235.1|Name=mRNA_F-serratus_M_contig130.2235.1|organism=Fucus serratus male|type=mRNA|length=421bp|location=Sequence derived from alignment at F-serratus_M_contig130:174468..174888+ (Fucus serratus male)
ACGGGACTGGACATTCTTGGGGGCCACGACTGCGGCTCGCCCGTCGTAGC
TGAATACTGCGGTCCCTTCCTCCATTTTGGGTATCGCGGGTTCAGAATCG
GCAGCAGGATTTGTCTCTGCATCTCCCGAGACAAACTCAGCAACTGGGGC
GACTTGATCGATAGTCTCGCTTTCTTCCGGTTCAACTTCTCTGGCAAATT
CAGCGCACGGCGCGGCAACCTCCTCGCTAGCGCCTCCACCAACCCGATCC
TCGGATACGTCGGGGGATGCGACCGCTCCCCCGGTGTCTCCCTCCACGCC
TTCCTGGGCCACCTCGGCGGAAGCGCCCGATTCGACGGCCTCCCCTCCTA
CAACACCTCCGTCGGCACTTCCGGGTGAATCCATAACCTCCTCGGCCACT
CCCTCGACACCTTCCGTTGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig130:174468..174888+

>mRNA_F-serratus_M_contig130.2235.1 ID=mRNA_F-serratus_M_contig130.2235.1|Name=mRNA_F-serratus_M_contig130.2235.1|organism=Fucus serratus male|type=CDS|length=756bp|location=Sequence derived from alignment at F-serratus_M_contig130:174468..174888+ (Fucus serratus male)
ACGGGACTGGACATTCTTGGGGGCCACGACTGCGGCTCGCCCGTCGTAGC
TGAATACTGCGGTCCCTTCCTCCATTTTGGGTATCGCGGGTTCAGAATCG
GCAGCAGGATTTGTCTCTGCATCTCCCGAGACAAACTCAGCAACTGGGGC
GACTTGATCGATAGTCTCGCTTTCTTCCGGTTCAACTTCTCTGGCAAATT
CAGCGCACGGCGCGGCAACCTCCTCGCTAGCGCCTCCACCAACCCGATCC
TCGGATACGTCGGGGGATGCGACCGCTCCCCCGGTGTCTCCCTCCACGCC
TTCCTGGGCCACCTCGGCGGAAGCGCCCGATTCGACGGCCTCCCCTCCTA
CAACACCTCCGTCGGCACTTCCGGGTGAACGGGACTGGACATTCTTGGGG
GCCACGACTGCGGCTCGCCCGTCGTAGCTGAATACTGCGGTCCCTTCCTC
CATTTTGGGTATCGCGGGTTCAGAATCGGCAGCAGGATTTGTCTCTGCAT
CTCCCGAGACAAACTCAGCAACTGGGGCGACTTGATCGATAGTCTCGCTT
TCTTCCGGTTCAACTTCTCTGGCAAATTCAGCGCACGGCGCGGCAACCTC
CTCGCTAGCGCCTCCACCAACCCGATCCTCGGATACGTCGGGGGATGCGA
CCGCTCCCCCGGTGTCTCCCTCCACGCCTTCCTGGGCCACCTCGGCGGAA
GCGCCCGATTCGACGGCCTCCCCTCCTACAACACCTCCGTCGGCACTTCC
GGGTGA
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