mRNA_F-serratus_M_contig130.2234.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig130.2234.1
Unique NamemRNA_F-serratus_M_contig130.2234.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig130.2234.1 vs. uniprot
Match: A0A6H5JR06_9PHAE (FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR06_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 1.860e-66
Identity = 131/172 (76.16%), Postives = 140/172 (81.40%), Query Frame = 1
Query:  115 GMLRQPPRPGFPKKSKDKRRKLHWKIIPQARLQTAQESIWAAVEESSDIQIDQEEFEQLWVEKAEVVAAKKKAEXXXXXDVKKKEGPKEVSLLDAKRAMNTSIAIARIRMAHAETRQAIMNMDETALSSNVVQSLQEFMPTKEEEMMLLNFNGDKALLGGAEKFMLEMIKVP 630
            GM R   RP  PKK KDKRRKLHWK IP ARLQ A ESIW   E ++DIQID EEFE+LWVEKAE VAAKKK E     DVKK E PKE+SLLD KRAMNTSIAIARI+M +AETRQA+MNMDET LSSNV+QSLQEFMPTKEEE  LLN+NGD ALLG AEKFMLEMIKVP
Sbjct: 3056 GMARXXXRPAGPKKPKDKRRKLHWKTIPHARLQKA-ESIWMETEVATDIQIDLEEFEELWVEKAEKVAAKKKLEEAKKKDVKK-EAPKEISLLDGKRAMNTSIAIARIKMTYAETRQAVMNMDETVLSSNVLQSLQEFMPTKEEEKTLLNYNGDPALLGNAEKFMLEMIKVP 3225          
BLAST of mRNA_F-serratus_M_contig130.2234.1 vs. uniprot
Match: D8LT97_ECTSI (Formin-like 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT97_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 4.780e-64
Identity = 127/172 (73.84%), Postives = 137/172 (79.65%), Query Frame = 1
Query:  115 GMLRQPPRPGFPKKSKDKRRKLHWKIIPQARLQTAQESIWAAVEESSDIQIDQEEFEQLWVEKAEVVAAKKKAEXXXXXDVKKKEGPKEVSLLDAKRAMNTSIAIARIRMAHAETRQAIMNMDETALSSNVVQSLQEFMPTKEEEMMLLNFNGDKALLGGAEKFMLEMIKVP 630
            GM R   RP  PKK KDKRRKLHWK IP ARLQ   ESIW   E ++DIQID EEFE+LWVEKAE VA KKK +     DVKK E PKE+SLLD KRAMNTSIAIARI+M +AETRQA+MNMDET LSSNV+QSLQEFMPT EEE  LLN+NGD ALLG AEKFMLEMIKVP
Sbjct: 2184 GMARXXXRPAGPKKPKDKRRKLHWKTIPHARLQKT-ESIWMETEVATDIQIDLEEFEELWVEKAEKVAPKKKLDEAKKKDVKK-EAPKEISLLDGKRAMNTSIAIARIKMTYAETRQAVMNMDETVLSSNVLQSLQEFMPTTEEEKTLLNYNGDPALLGNAEKFMLEMIKVP 2353          
BLAST of mRNA_F-serratus_M_contig130.2234.1 vs. uniprot
Match: A0A1V9YVV8_9STRA (Formin-homology 2 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YVV8_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 8.040e-20
Identity = 60/156 (38.46%), Postives = 98/156 (62.82%), Query Frame = 1
Query:  166 KRRKLHWKIIPQARLQTAQES-IWAAVEESSDIQIDQEEFEQLWVEKAEVVAAKKKAEXXXXXDVKKKEGPKEVSLLDAKRAMNTSIAIARIRMAHAETRQAIMNMDETALSSNVVQSLQEFMPTKEEEMMLLNFNGDKALLGGAEKFMLEMIKVP 630
            +R+KL W+ IP+ RL++ ++S IW A +E   +++D +E E L+  KA+  A KK A        K  +G + ++L+D KRAMNT+IA+ARI++++ +   AI N D   L+   + +++E++PT EE  ++  ++GD   LG AEKF L M  VP
Sbjct: 1254 RRKKLFWQPIPEDRLKSVKQSTIWEAKDEEIKLEMDMDEIESLFFAKADPKAIKKVA--------KPVQGKQAITLVDGKRAMNTAIALARIKLSYTQIAGAIRNYDACGLTLEQLVTVKEYLPTDEEVGVVKRYSGDPKSLGEAEKFFLAMAGVP 1401          
BLAST of mRNA_F-serratus_M_contig130.2234.1 vs. uniprot
Match: A0A484DUN6_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DUN6_BRELC)

HSP 1 Score: 96.7 bits (239), Expect = 1.450e-19
Identity = 56/159 (35.22%), Postives = 97/159 (61.01%), Query Frame = 1
Query:  154 KSKDKRRKLHWKIIPQARLQTA-QESIWAAVEESSDIQIDQEEFEQLWVEKAEVVAAKKKAEXXXXXDVKKKEGPKEVSLLDAKRAMNTSIAIARIRMAHAETRQAIMNMDETALSSNVVQSLQEFMPTKEEEMMLLNFNGDKALLGGAEKFMLEMIKV 627
            K K  R+KLHW+ I + R+    +++IW    E+ + ++D EE E L+   +   +AK  +       +++K+    V+L+D KRAMN +I++AR++++++E   A+   D T LS   +  + EF+PTKEE +++  + GDK LLG AEKF+ E+ K+
Sbjct:  900 KPKRARKKLHWQAISEERISNINKQTIWEDENENVNFEMDMEELEALFFANSNTRSAKSNSTFGQSKPIQRKQ---TVTLIDGKRAMNAAISLARVKLSYSEIADAVAKFDPTGLSLEQLIGISEFLPTKEEIVLVCGYVGDKELLGEAEKFITEIAKL 1055          
BLAST of mRNA_F-serratus_M_contig130.2234.1 vs. uniprot
Match: A0A1V9ZJH8_9STRA (Formin-homology 2 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZJH8_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 7.800e-16
Identity = 58/168 (34.52%), Postives = 91/168 (54.17%), Query Frame = 1
Query:  148 PKKSKDKRRKLHWKIIPQARLQTAQES-IWAAVEESSDIQIDQEEFEQLWVEKAEVVAAKKKAEXXXXXDVKKKEGPKE------VSLLDAKRAMNTSIAIARIRMAHAETRQAIMNMDETALSSNVVQSLQEFMPTKEEEMMLLNFNGDKALLGGAEKFMLEMIKVP 630
            PK    +R+KL W+ IP+ RL+   +S IW A  +   +++D +E E L+  K                D  KK  PK       V+L+D KRAMN +IA+ARI+++HA+   A+ + D   LS   + ++ E++PT +E  ++  ++GD   LG AE+F L M  VP
Sbjct: 1080 PKPKPVRRKKLFWQPIPEDRLKNGHQSTIWEAKGDEIKLEMDMDEIESLFFAKV---------------DKSKKTAPKALQRKQAVTLVDGKRAMNAAIALARIKLSHAQLAAAVASYDAGGLSLEQLVTINEYLPTADEVGVVQRYSGDPDTLGEAERFFLAMATVP 1232          
BLAST of mRNA_F-serratus_M_contig130.2234.1 vs. uniprot
Match: A0A024TI59_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TI59_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 5.480e-14
Identity = 59/174 (33.91%), Postives = 93/174 (53.45%), Query Frame = 1
Query:  121 LRQPPRPGFPKKSKDK----RRKLHWKIIPQARLQTAQESIWAAVEESSDIQIDQEEFEQLWVEKAEVVAAKKKAEXXXXXDVKKKEGPKEVSLLDAKRAMNTSIAIARIRMAHAETRQAIMNMDETALSSNVVQSLQEFMPTKEEEMMLLNFNGDKALLGGAEKFMLEMIKVP 630
            +++P  P  PKK   K     R L W  IP   +   Q ++W  +   SD ++  E F+  W+ +    A KK  +       KKK+    V LLD+K   N  IAIAR +++ AE +  +++MD+ A++ + + SL    PT EE+ +L N++G   +LGG EKF LEM+ +P
Sbjct:  547 VKKPDEPVLPKKESVKPNVDMRALFWTRIP---VNVVQSTVWNTL---SDTKVPLENFDLEWMFRKNPDATKKPDDDAF----KKKKENTAVLLLDSKTQQNVGIAIARFKLSPAEVKAGLLSMDKDAITVDHLSSLIALAPTLEEQDILKNYDGPVDVLGGVEKFFLEMLSIP 710          
BLAST of mRNA_F-serratus_M_contig130.2234.1 vs. uniprot
Match: A0A0D3EH05_BRAOL (Formin-like protein n=4 Tax=Brassica TaxID=3705 RepID=A0A0D3EH05_BRAOL)

HSP 1 Score: 74.3 bits (181), Expect = 7.110e-12
Identity = 34/86 (39.53%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  373 PKEVSLLDAKRAMNTSIAIARIRMAHAETRQAIMNMDETALSSNVVQSLQEFMPTKEEEMMLLNFNGDKALLGGAEKFMLEMIKVP 630
            P+++ L+D +RA NT I +A+++M   +   A++ MD+T L  + +++L +F PT EE  +L N+ GDK +LG  E++ LE++KVP
Sbjct:  769 PEKIQLIDLRRANNTEIMLAKVKMPLPDMMAAVLAMDDTVLDIDQIENLVKFCPTNEEMELLKNYTGDKEMLGKCEQYFLELMKVP 854          
BLAST of mRNA_F-serratus_M_contig130.2234.1 vs. uniprot
Match: B7FZT7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FZT7_PHATC)

HSP 1 Score: 73.6 bits (179), Expect = 1.400e-11
Identity = 56/175 (32.00%), Postives = 94/175 (53.71%), Query Frame = 1
Query:  154 KSKDKRRKLHWKIIPQARLQTAQESIWAAVEESSDIQ---IDQEEFEQLW-VEKAEVVAAKKKAEXXXXXDVKKKEGPKEVSLLDAKRAMNTSIAIARIRMAHAETRQAIMNMDETALSSNVVQSLQEFMPTKEEEMMLLNFNGDKALLGGA-------------EKFMLEMIKV 627
            K   +R +LHWK + +        S+WA +++  +++   ID+EEF++L+ VEK+E V   K A       V  ++    V ++DAKRA N  I +AR++M+H +   A+  ++E ALS+  ++ + EF+PTK+E   L     +  +LGG              EKFM+ M+ V
Sbjct: 1679 KDSHRRARLHWKTLRKV----TSNSLWAQIDQDDELENIDIDEEEFQELFQVEKSETVTPVKAA-------VVTEKSSASVRVIDAKRANNGGIILARLKMSHDDMADAVDRINEHALSAEQIEKMIEFLPTKDERKAL-----EAYMLGGGQDAAEKFEGLCECEKFMVSMMTV 1837          
BLAST of mRNA_F-serratus_M_contig130.2234.1 vs. uniprot
Match: UPI0006451BBA (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006451BBA)

HSP 1 Score: 73.2 bits (178), Expect = 1.700e-11
Identity = 53/157 (33.76%), Postives = 87/157 (55.41%), Query Frame = 1
Query:  166 KRRKLHWKIIPQARLQTAQESIWAAVEESSDIQIDQEEFEQLWVEKAEVVAAKKKAEXXXXXDVKKKEG--PKEVSLLDAKRAMNTSIAIARIRMAHAETRQAIMNMDETALSSNVVQSLQEFMPTKEEEMMLLN-FNGDKALLGGAEKFMLEMIKV 627
            K R+LHW +IP+ +L+   E+ W ++      + DQ   EQ W      ++   K        +  K G  P  V+LLD +RA N  I +A+ ++++A+ ++AI++ DE  LS   + ++   +P  EEE   LN FNGD+A LG AE+F +EM+ +
Sbjct:  463 KMRQLHWSVIPKDKLK---ETFWDSLSPVKSNEKDQSLVEQ-WFS----LSPPPKPVGGLKDKLAGKSGGAPTIVNLLDLRRANNACILLAQFKLSYADIKEAILSCDEQRLSVEQLIAIDAMLPITEEEAKKLNAFNGDRATLGNAERFFIEMMAI 611          
BLAST of mRNA_F-serratus_M_contig130.2234.1 vs. uniprot
Match: A0A1V9YFX1_9STRA (Formin-homology 2 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YFX1_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 7.440e-11
Identity = 50/159 (31.45%), Postives = 87/159 (54.72%), Query Frame = 1
Query:  154 KSKDKRRKLHWKIIPQARLQTAQESIWAAVEESSDIQIDQEEFEQLWVEKAEVVAAKKKAEXXXXXDVKKKEGPKEVSLLDAKRAMNTSIAIARIRMAHAETRQAIMNMDETALSSNVVQSLQEFMPTKEEEMMLLNFNGDKALLGGAEKFMLEMIKVP 630
            K+K K R L+W+ +        + S+W+ +E S + Q + +    L+       AA   A+      V KK   + V+L+DAKRA N  I +AR R+ +AE ++A++ +D   L++  + +L +F P  EE   + ++ G++ LLG AE++ LE+  VP
Sbjct:  233 KAKPKLRNLYWEPVAAP----TEASLWSKIELSEEHQKELDSLTTLFA------AAPPAADKEKKKPVAKKAATR-VALIDAKRANNLGIMLARFRLPYAEIKRAVLEIDRDVLTTEKISALIQFAPEGEELETVKSYTGERKLLGDAEQYFLEISTVP 380          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig130.2234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JR06_9PHAE1.860e-6676.16FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LT97_ECTSI4.780e-6473.84Formin-like 2 n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A1V9YVV8_9STRA8.040e-2038.46Formin-homology 2 domain-containing protein n=1 Ta... [more]
A0A484DUN6_BRELC1.450e-1935.22Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A1V9ZJH8_9STRA7.800e-1634.52Formin-homology 2 domain-containing protein n=1 Ta... [more]
A0A024TI59_9STRA5.480e-1433.91Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A0D3EH05_BRAOL7.110e-1239.53Formin-like protein n=4 Tax=Brassica TaxID=3705 Re... [more]
B7FZT7_PHATC1.400e-1132.00Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
UPI0006451BBA1.700e-1133.76hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A1V9YFX1_9STRA7.440e-1131.45Formin-homology 2 domain-containing protein n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig130contigF-serratus_M_contig130:166583..169533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score228.0
Seed ortholog evalue4e-57
Seed eggNOG ortholog2880.D8LT97
KEGG koko:K04512,ko:K05745,ko:K10293,ko:K11238
KEGG Pathwayko04011,ko04310,ko04810,map04011,map04310,map04810
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005522,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006996,GO:0007010,GO:0007015,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008289,GO:0009987,GO:0010638,GO:0015629,GO:0016020,GO:0016043,GO:0016477,GO:0022607,GO:0030029,GO:0030036,GO:0030041,GO:0030832,GO:0030833,GO:0030838,GO:0030865,GO:0030866,GO:0031254,GO:0031334,GO:0031344,GO:0031345,GO:0032153,GO:0032154,GO:0032155,GO:0032271,GO:0032273,GO:0032535,GO:0032956,GO:0032970,GO:0033043,GO:0034622,GO:0035091,GO:0040011,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044877,GO:0045010,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048870,GO:0050789,GO:0050794,GO:0051015,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051258,GO:0051493,GO:0051495,GO:0051674,GO:0060491,GO:0065003,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066,GO:0097435,GO:0098590,GO:0099568,GO:0110053,GO:0120032,GO:0120033,GO:0120035,GO:1902903,GO:1902905,GO:1904170,GO:1904171
EggNOG free text desc.actin binding
EggNOG OGsKOG1922@1,KOG1922@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04121,ko04147
Exons5
Model size632
Cds size627
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig130.2234.1prot_F-serratus_M_contig130.2234.1Fucus serratus malepolypeptideF-serratus_M_contig130 166583..169530 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929253.3372352-CDS-F-serratus_M_contig130:166582..1666091622929253.3372352-CDS-F-serratus_M_contig130:166582..166609Fucus serratus maleCDSF-serratus_M_contig130 166583..166609 -
1690962770.0107768-CDS-F-serratus_M_contig130:166582..1666091690962770.0107768-CDS-F-serratus_M_contig130:166582..166609Fucus serratus maleCDSF-serratus_M_contig130 166583..166609 -
1622929253.3548899-CDS-F-serratus_M_contig130:167628..1677091622929253.3548899-CDS-F-serratus_M_contig130:167628..167709Fucus serratus maleCDSF-serratus_M_contig130 167629..167709 -
1690962770.0220122-CDS-F-serratus_M_contig130:167628..1677091690962770.0220122-CDS-F-serratus_M_contig130:167628..167709Fucus serratus maleCDSF-serratus_M_contig130 167629..167709 -
1622929253.4060078-CDS-F-serratus_M_contig130:168236..1684281622929253.4060078-CDS-F-serratus_M_contig130:168236..168428Fucus serratus maleCDSF-serratus_M_contig130 168237..168428 -
1690962770.0303671-CDS-F-serratus_M_contig130:168236..1684281690962770.0303671-CDS-F-serratus_M_contig130:168236..168428Fucus serratus maleCDSF-serratus_M_contig130 168237..168428 -
1622929253.4946194-CDS-F-serratus_M_contig130:168887..1689771622929253.4946194-CDS-F-serratus_M_contig130:168887..168977Fucus serratus maleCDSF-serratus_M_contig130 168888..168977 -
1690962770.038811-CDS-F-serratus_M_contig130:168887..1689771690962770.038811-CDS-F-serratus_M_contig130:168887..168977Fucus serratus maleCDSF-serratus_M_contig130 168888..168977 -
1622929253.510591-CDS-F-serratus_M_contig130:169293..1695301622929253.510591-CDS-F-serratus_M_contig130:169293..169530Fucus serratus maleCDSF-serratus_M_contig130 169294..169530 -
1690962770.0481985-CDS-F-serratus_M_contig130:169293..1695301690962770.0481985-CDS-F-serratus_M_contig130:169293..169530Fucus serratus maleCDSF-serratus_M_contig130 169294..169530 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929253.5278187-UTR-F-serratus_M_contig130:169530..1695331622929253.5278187-UTR-F-serratus_M_contig130:169530..169533Fucus serratus maleUTRF-serratus_M_contig130 169531..169533 -
1690962770.062574-UTR-F-serratus_M_contig130:169530..1695331690962770.062574-UTR-F-serratus_M_contig130:169530..169533Fucus serratus maleUTRF-serratus_M_contig130 169531..169533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig130.2234.1

>prot_F-serratus_M_contig130.2234.1 ID=prot_F-serratus_M_contig130.2234.1|Name=mRNA_F-serratus_M_contig130.2234.1|organism=Fucus serratus male|type=polypeptide|length=209bp
MPPPLPGMARGPGGLPPPPPLPGMGGVTRGLPPLPPRGMLRQPPRPGFPK
KSKDKRRKLHWKIIPQARLQTAQESIWAAVEESSDIQIDQEEFEQLWVEK
AEVVAAKKKAEEAKKKDVKKKEGPKEVSLLDAKRAMNTSIAIARIRMAHA
ETRQAIMNMDETALSSNVVQSLQEFMPTKEEEMMLLNFNGDKALLGGAEK
FMLEMIKVP
back to top

mRNA from alignment at F-serratus_M_contig130:166583..169533-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig130.2234.1 ID=mRNA_F-serratus_M_contig130.2234.1|Name=mRNA_F-serratus_M_contig130.2234.1|organism=Fucus serratus male|type=mRNA|length=2951bp|location=Sequence derived from alignment at F-serratus_M_contig130:166583..169533- (Fucus serratus male)
CCGATGCCGCCGCCGTTGCCCGGCATGGCCAGGGGACCGGGGGGGCTTCC CCCTCCGCCGCCTCTGCCTGGCATGGGCGGGGTTACTAGAGGACTGCCCC CGCTGCCGCCGAGGGGAATGTTGCGTCAGCCGCCTCGGCCAGGTTTTCCG AAAAAATCCAAGGACAAGCGCCGGAAGCTCCACTGGAAGATTATTCCCCA GGCGAGGCTGCAAACAGCGCAGGAAAGCATCTGGGCCGCGGTAAGTCGTA GTGCAAGAGGAGAGAGGACTTGCGAGCTGCGGTAAAAGCCAAACGCTTAC CGTAGGATTGATTTGGCGTACACGCGGGCACTGGAGCCTGTGGAAAATAT GAAGCATAAAAACGTTGGTTGACGAATGGACGCACTTGCGTTGCTTGTTA TTGACCATCTCATCTCATCTCTCTCTTGATTCTCGAATATCGGCGGCATT GCGACGACAGAGATATGCTTCCTAGAATTATAAGTGTCTTGAGGAGCAAG CATTTTCGTCATCGGGTTGTCCGGCCATTTAATTTTCCTAACTACGTCCG TGACAGGTGGAGGAGAGCTCGGACATCCAGATAGATCAGGAGGAGTTCGA GCAGCTATGGGTGGAGAAGGCGGAGGTCGTGGCCGCCAAAAAGAAGGTGG GAGCTTAAGTCAGCGGTATCCGACCGATGAGGTTCGGGGATGAACCAGTT GGGGTGGTGGCGCGGTAGAAGGGTTTTGACGGAACTCACGGACTTGTCGC AACTTGCGCGATCATTCTCGGCGTAATCTTTGGGCAAGAAATGGTGAAGA AGAGAGGTATACGTTGATGTTGTATGTCAAGAAGTTGGAGGCAAAGGACA TGATCGAATTGCCGAGCTCCATCGCCCCTCGCGTTGTAGTAATGATGATT GCCATGCTGTATTGTATTGTTAATGTTTTGCCAGCGGCGTATGACAGAGG AAAATTGCAACGCCTTGGGGGGGGGGCGAAGTAACGCCCCCTCCCCCTCC CTCTGGCTCCATCCGCAACAAAATACAAAACACAAACAAGGAAAAAAAAT GCGTGCTTGTGGGACCCTTTTACCCCTCCTTCCCTTTTTCTACCGGGCTG GTCAGGCGGAGGAGGCAAAAAAGAAGGACGTGAAGAAAAAGGAGGGGCCG AAAGAGGTCTCGCTGCTAGACGCGAAACGCGCCATGAACACGTCCATCGC CATCGCTAGGATTAGGATGGCGCACGCCGAGACACGGCAGGCCATCATGA ACATGGACGAGACTGCCCTATCGTCCAACGTGGTGCAGTCGTTGCAGGTG CCCGCGTGCCGAGTCGGTCGCGCGCGCGAGCACGTTTTGCCGTGTTGGTT TATCGTTGACGGGTATCGCGACTCTGTTTTCCTTTGTGTCTGTGTTTTAG CTTGCTTTTTTTTCGTGCGTGCTTGGAAGGGATGTGTAGATCCGCAGACC CCTTTGCCCCCGCGTGACGGGAAGGTAAAGAAAGCCCCTCAGAAACTGAA ACAGGGTGGTGCGGTAACGTGATGGGGGGTCGTCTTGAGTCCGTTCGCGA TGAACCATGTTTTGAAGAGAGGGACGCGGTCGCTGTGATCCCTCCCCCCC CCCCGGCCCTTCTCGAGCTAGCTCACAGTTGCGCGAAAACAAGAGTTGAC TTTCTCCGTTTTAGTCCAAGCGACCCGTGGATGCACGCCTCAAAACACAG CAAGCAAGCACACGACGTCGCCGCCGCTGCCGCTCTTGATGCTTTCGTAG CACGAGGGGTTTAGCTTCCCGGCTCTCATACGCGCGGCTTTATTTCGCTG GCTGGCTTGATCTCTTTTCTACAGGAGTTTATGCCCACGAAGGAAGAGGA GATGATGTTGCTGAACTTTAACGGCGATAAGGCATTGCTGGGAGGGGCGG AGAAGGTGTGCACGCTGGTTCGATGAGGGGTGGACATAGGTTTCTATACG CCCTTTTATTTAAAGGCGTTTTCTAGGAGGGGGTCGTGGTTTCTGTCATA TGTAGGCCTCGTCTCTTACCGTGCGGTTTCATAAATTGTAGGGCTTCATC CTGGCAATCTCTACCGTCTTCCCCTTTGCCCCTCGATGGGGTGGTCCACG CTACAAGAAACTCCAGACCCGTACCACCCGTCGTATTGGGCCTTTTCTCT TATGCTGTCTGGTCTGGGAAAGAGAAGTTGTACTGCTTCATCTTGCGTGG ATTTTACGAAAATAAAAAGACACCATGCGGGGTTCGGGACTCGCTCCCTT GCGATATCGGTGCTTTTTTTCTGTATTTATTTGTTATTATTTTGTGCTTT TGGTCGTTGATTTTTTTTTCAGTCGACGCGTGTCACGGAATGGATACGGC GACCGCGCAAACATTTGGTCCAATCCACGGCACGCGTACGCCTGTGATGT TTCTGAATCACAAATGTGCACTACATACCACAAGTGGGCGTAAGAAAAGA GAGGCACACAAATATTGCTGCTCCTTGGTGTTACCTGAAAAGGCAGCACG CGTTACTGGAACGCCCTTGAGGACTACTGGCCCTGTGCCGGCGGACTCTC GGCAGTAAACGCCATCGGTACGTAATTTGCGTGACCCGATAAAGGCTGCC CGGTTCGATCACGTCACCCGTGGTCCTCAACGCGGGGCGTGATGGGGAAC TTGATGCTGGGAGCCTTCCCGGTCCCAGCGTCCGGTCTCGTCTCCTGCGA GGGAGTTTCGGCTCCCGCAAGCAAGAACAAGAGCAGTGAGATTCTGCACC TATTTAATAATATACTTTACGAGATTTGTACATCCCAAGCACAGCCTACG ATATCGTACAGTACAGATATTGAGCGAAAATCGACCTTCAAAAGTATATT AAAAGGTTCTCTAAAAACATGATACTCTTACTATCTTATTTGCTCTCCTT GTCGTCCGCATCACTCGCGCCCAGTTCATGCTGGAGATGATCAAGGTTCC G
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig130:166583..169533-

>mRNA_F-serratus_M_contig130.2234.1 ID=mRNA_F-serratus_M_contig130.2234.1|Name=mRNA_F-serratus_M_contig130.2234.1|organism=Fucus serratus male|type=CDS|length=1254bp|location=Sequence derived from alignment at F-serratus_M_contig130:166583..169533- (Fucus serratus male)
ATGCCGCCGCCGTTGCCCGGCATGGCCAGGGGACCGGGGGGGCTTCCCCC
TCCGCCGCCTCTGCCTGGCATGGGCGGGGTTACTAGAGGACTGCCCCCGC
TGCCGCCGAGGGGAATGTTGCGTCAGCCGCCTCGGCCAGGTTTTCCGAAA
AAATCCAAGGACAAGCGCCGGAAGCTCCACTGGAAGATTATTCCCCAGGC
GAGGCTGCAAACAGCGCAGGAAAGCATCTGGGCCGCGATGCCGCCGCCGT
TGCCCGGCATGGCCAGGGGACCGGGGGGGCTTCCCCCTCCGCCGCCTCTG
CCTGGCATGGGCGGGGTTACTAGAGGACTGCCCCCGCTGCCGCCGAGGGG
AATGTTGCGTCAGCCGCCTCGGCCAGGTTTTCCGAAAAAATCCAAGGACA
AGCGCCGGAAGCTCCACTGGAAGATTATTCCCCAGGCGAGGCTGCAAACA
GCGCAGGAAAGCATCTGGGCCGCGGTGGAGGAGAGCTCGGACATCCAGAT
AGATCAGGAGGAGTTCGAGCAGCTATGGGTGGAGAAGGCGGAGGTCGTGG
CCGCCAAAAAGAAGGTGGAGGAGAGCTCGGACATCCAGATAGATCAGGAG
GAGTTCGAGCAGCTATGGGTGGAGAAGGCGGAGGTCGTGGCCGCCAAAAA
GAAGGCGGAGGAGGCAAAAAAGAAGGACGTGAAGAAAAAGGAGGGGCCGA
AAGAGGTCTCGCTGCTAGACGCGAAACGCGCCATGAACACGTCCATCGCC
ATCGCTAGGATTAGGATGGCGCACGCCGAGACACGGCAGGCCATCATGAA
CATGGACGAGACTGCCCTATCGTCCAACGTGGTGCAGTCGTTGCAGGCGG
AGGAGGCAAAAAAGAAGGACGTGAAGAAAAAGGAGGGGCCGAAAGAGGTC
TCGCTGCTAGACGCGAAACGCGCCATGAACACGTCCATCGCCATCGCTAG
GATTAGGATGGCGCACGCCGAGACACGGCAGGCCATCATGAACATGGACG
AGACTGCCCTATCGTCCAACGTGGTGCAGTCGTTGCAGGAGTTTATGCCC
ACGAAGGAAGAGGAGATGATGTTGCTGAACTTTAACGGCGATAAGGCATT
GCTGGGAGGGGCGGAGAAGGAGTTTATGCCCACGAAGGAAGAGGAGATGA
TGTTGCTGAACTTTAACGGCGATAAGGCATTGCTGGGAGGGGCGGAGAAG
TTCATGCTGGAGATGATCAAGGTTCCGTTCATGCTGGAGATGATCAAGGT
TCCG
back to top