mRNA_F-serratus_M_contig130.2229.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig130.2229.1
Unique NamemRNA_F-serratus_M_contig130.2229.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig130.2229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig130contigF-serratus_M_contig130:109468..109901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size435
Cds size372
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929250.4660826-UTR-F-serratus_M_contig130:109467..1095291622929250.4660826-UTR-F-serratus_M_contig130:109467..109529Fucus serratus maleUTRF-serratus_M_contig130 109468..109529 +
1690962769.1225939-UTR-F-serratus_M_contig130:109467..1095291690962769.1225939-UTR-F-serratus_M_contig130:109467..109529Fucus serratus maleUTRF-serratus_M_contig130 109468..109529 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929250.4833899-CDS-F-serratus_M_contig130:109529..1099011622929250.4833899-CDS-F-serratus_M_contig130:109529..109901Fucus serratus maleCDSF-serratus_M_contig130 109530..109901 +
1690962769.1339445-CDS-F-serratus_M_contig130:109529..1099011690962769.1339445-CDS-F-serratus_M_contig130:109529..109901Fucus serratus maleCDSF-serratus_M_contig130 109530..109901 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig130.2229.1prot_F-serratus_M_contig130.2229.1Fucus serratus malepolypeptideF-serratus_M_contig130 109530..109901 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig130.2229.1

>prot_F-serratus_M_contig130.2229.1 ID=prot_F-serratus_M_contig130.2229.1|Name=mRNA_F-serratus_M_contig130.2229.1|organism=Fucus serratus male|type=polypeptide|length=124bp
MVAGSNPALFVSATLLVFAWPGSSSRFPPPVSTPPTAWSSPGLMVVEASA
PIVGTSAPNGVELFPSTSISAPATPSTMTSARQEPSVPAGPTHTADVGTT
ISEWTPGTMFSIFAAFPSPPSPTT
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mRNA from alignment at F-serratus_M_contig130:109468..109901+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig130.2229.1 ID=mRNA_F-serratus_M_contig130.2229.1|Name=mRNA_F-serratus_M_contig130.2229.1|organism=Fucus serratus male|type=mRNA|length=434bp|location=Sequence derived from alignment at F-serratus_M_contig130:109468..109901+ (Fucus serratus male)
TCCTTCCTTCACTCGTGACCACACTTCCTGCGGTAACATGATCGCGATCT
TCTTCCAGTTGAATGGTCGCTGGCTCCAATCCTGCCCTCTTTGTTTCGGC
GACGCTGCTCGTCTTCGCGTGGCCAGGATCATCATCGCGGTTTCCGCCGC
CCGTCTCAACCCCCCCAACTGCTTGGTCATCGCCTGGTCTCATGGTGGTA
GAGGCTTCTGCACCGATCGTTGGCACTTCTGCGCCTAACGGGGTCGAACT
TTTTCCTTCCACGTCCATTTCCGCACCAGCTACTCCGTCCACGATGACCT
CCGCCCGGCAAGAGCCGTCGGTTCCCGCTGGCCCTACACACACCGCGGAC
GTCGGTACCACCATCTCAGAATGGACACCGGGAACGATGTTTTCCATCTT
CGCCGCTTTTCCTTCTCCGCCATCGCCTACGACG
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Coding sequence (CDS) from alignment at F-serratus_M_contig130:109468..109901+

>mRNA_F-serratus_M_contig130.2229.1 ID=mRNA_F-serratus_M_contig130.2229.1|Name=mRNA_F-serratus_M_contig130.2229.1|organism=Fucus serratus male|type=CDS|length=744bp|location=Sequence derived from alignment at F-serratus_M_contig130:109468..109901+ (Fucus serratus male)
ATGGTCGCTGGCTCCAATCCTGCCCTCTTTGTTTCGGCGACGCTGCTCGT
CTTCGCGTGGCCAGGATCATCATCGCGGTTTCCGCCGCCCGTCTCAACCC
CCCCAACTGCTTGGTCATCGCCTGGTCTCATGGTGGTAGAGGCTTCTGCA
CCGATCGTTGGCACTTCTGCGCCTAACGGGGTCGAACTTTTTCCTTCCAC
GTCCATTTCCGCACCAGCTACTCCGTCCACGATGACCTCCGCCCGGCAAG
AGCCGTCGGTTCCCGCTGGCCCTACACACACCGCGGACGTCGGTACCACC
ATCTCAGAATGGACACCGGGAACGATGTTTTCCATCTTCGCCGCTTTTCC
TTCTCCGCCATCGCCTACGACGATGGTCGCTGGCTCCAATCCTGCCCTCT
TTGTTTCGGCGACGCTGCTCGTCTTCGCGTGGCCAGGATCATCATCGCGG
TTTCCGCCGCCCGTCTCAACCCCCCCAACTGCTTGGTCATCGCCTGGTCT
CATGGTGGTAGAGGCTTCTGCACCGATCGTTGGCACTTCTGCGCCTAACG
GGGTCGAACTTTTTCCTTCCACGTCCATTTCCGCACCAGCTACTCCGTCC
ACGATGACCTCCGCCCGGCAAGAGCCGTCGGTTCCCGCTGGCCCTACACA
CACCGCGGACGTCGGTACCACCATCTCAGAATGGACACCGGGAACGATGT
TTTCCATCTTCGCCGCTTTTCCTTCTCCGCCATCGCCTACGACG
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