mRNA_F-serratus_M_contig130.2228.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig130.2228.1
Unique NamemRNA_F-serratus_M_contig130.2228.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig130.2228.1 vs. uniprot
Match: D8LTA7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTA7_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 1.500e-60
Identity = 110/164 (67.07%), Postives = 131/164 (79.88%), Query Frame = 1 
Query:  358 DDMDAAAM-AAACLDRLTFSEFREEVLSRTQHAHHSAXXXXXXXXDAISGQYESIFKTLMNKIKTLEINQSLFSLYVDDVHACYQDVIAQIIQEQKRARASQSELLHAQTVHIMHMSDQWPAFHALQKRIVEVEDRMLLSSMAWFSSLLCLAILVCSCCVNICR 846
            ++ D A + AAACLD L+FSEFREEVL+RTQ A  SA         AI GQYESIFKTLMNKIKTLEINQSLF LY+DDVH CYQDVIAQ++QEQ+RARAS+S+LL+ Q  H+ H+ DQWPAF  LQ ++VEVE+RMLLSS+AWF+SL CL ++VCSCC   CR
Sbjct:  524 EETDVAVLSAAACLDTLSFSEFREEVLARTQQAQQSAGGGV-----AIGGQYESIFKTLMNKIKTLEINQSLFGLYIDDVHGCYQDVIAQMLQEQERARASRSQLLNTQAAHLAHIGDQWPAFQELQAKVVEVENRMLLSSLAWFTSLFCLVLMVCSCCFKTCR 682
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BLAST of mRNA_F-serratus_M_contig130.2228.1 vs. uniprot
Match: A0A6H5JRG7_9PHAE (SUN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG7_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 3.200e-59
Identity = 110/167 (65.87%), Postives = 133/167 (79.64%), Query Frame = 1 
Query:  349 VRVDDMDAAAMA-AACLDRLTFSEFREEVLSRTQHAHHSAXXXXXXXXDAISGQYESIFKTLMNKIKTLEINQSLFSLYVDDVHACYQDVIAQIIQEQKRARASQSELLHAQTVHIMHMSDQWPAFHALQKRIVEVEDRMLLSSMAWFSSLLCLAILVCSCCVNICR 846
            V V++ D A ++ AACLD L+FSEFREEVL+RTQ A  SA         AI GQYESIFKTLMNKIKTLEINQSLF LY+DDVH CYQ+VIAQ+IQEQ+RARAS+S+LL+ Q  H+ H+ DQWPAF  LQ ++ EVE+RMLLSS+AWF+SL CL ++VCSCC+  CR
Sbjct:  973 VLVEETDVAVLSTAACLDTLSFSEFREEVLARTQQAQQSAGGGV-----AIGGQYESIFKTLMNKIKTLEINQSLFGLYIDDVHGCYQNVIAQMIQEQERARASRSQLLNTQAAHLAHIGDQWPAFQELQAKVAEVENRMLLSSLAWFTSLFCLVLIVCSCCLKACR 1134
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BLAST of mRNA_F-serratus_M_contig130.2228.1 vs. uniprot
Match: A0A4D9DBJ9_9STRA (SUN domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DBJ9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.950e-9
Identity = 44/146 (30.14%), Postives = 79/146 (54.11%), Query Frame = 1 
Query:  391 CLDRLTFSEFREEVLSRTQHAHHSAXXXXXXXXDAI-SGQ-YESIFKTLMNKIKTLEINQSLFSLYVDDVHACYQDVIAQIIQEQKRARASQSE---LLHAQTVHIMHMSDQWPAFHALQKRIVEVEDRMLLSSMAWFSSLLCLAI 813
            CL ++  S+F+++ L++ Q    +          ++ SG  Y++IFKTLM+++ +LEINQS+F +YV ++H+C+  V+  ++ EQ RAR    E   LL A+      +  Q        +R+  +E   L   +AW + + CL +
Sbjct:  709 CLQQMRLSDFKKQKLAKLQDDPRTKDHGTGSTATSLGSGSPYDNIFKTLMDEMASLEINQSIFDVYVSNLHSCFVQVVDDVLLEQDRARLEALETIGLLQAR------LQSQAAVNEQFLRRMQRLESMSLAGGLAWIALIACLVL 848
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig130.2228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LTA7_ECTSI1.500e-6067.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRG7_9PHAE3.200e-5965.87SUN domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A4D9DBJ9_9STRA1.950e-930.14SUN domain-containing protein n=2 Tax=Monodopsidac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig130contigF-serratus_M_contig130:107086..108820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size849
Cds size846
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig130.2228.1prot_F-serratus_M_contig130.2228.1Fucus serratus malepolypeptideF-serratus_M_contig130 107088..108820 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929252.301401-CDS-F-serratus_M_contig130:107087..1071981622929252.301401-CDS-F-serratus_M_contig130:107087..107198Fucus serratus maleCDSF-serratus_M_contig130 107088..107198 -
1690962769.5847216-CDS-F-serratus_M_contig130:107087..1071981690962769.5847216-CDS-F-serratus_M_contig130:107087..107198Fucus serratus maleCDSF-serratus_M_contig130 107088..107198 -
1622929252.3219376-CDS-F-serratus_M_contig130:107557..1077061622929252.3219376-CDS-F-serratus_M_contig130:107557..107706Fucus serratus maleCDSF-serratus_M_contig130 107558..107706 -
1690962769.5975873-CDS-F-serratus_M_contig130:107557..1077061690962769.5975873-CDS-F-serratus_M_contig130:107557..107706Fucus serratus maleCDSF-serratus_M_contig130 107558..107706 -
1622929252.3379502-CDS-F-serratus_M_contig130:108234..1088201622929252.3379502-CDS-F-serratus_M_contig130:108234..108820Fucus serratus maleCDSF-serratus_M_contig130 108235..108820 -
1690962769.608217-CDS-F-serratus_M_contig130:108234..1088201690962769.608217-CDS-F-serratus_M_contig130:108234..108820Fucus serratus maleCDSF-serratus_M_contig130 108235..108820 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig130.2228.1

>prot_F-serratus_M_contig130.2228.1 ID=prot_F-serratus_M_contig130.2228.1|Name=mRNA_F-serratus_M_contig130.2228.1|organism=Fucus serratus male|type=polypeptide|length=282bp
RSCGSVDKDVESTSNTIHGGVETASRLETDKIHASDGEASNREAIEQGGS
PAEQAGPDTELPLEAADDSRDPREEAAARTQTLSMSPPETLPSDNEAVSS
GSALYVTEDAQGGEPLVRVDDMDAAAMAAACLDRLTFSEFREEVLSRTQH
AHHSAGGGNGGGGDAISGQYESIFKTLMNKIKTLEINQSLFSLYVDDVHA
CYQDVIAQIIQEQKRARASQSELLHAQTVHIMHMSDQWPAFHALQKRIVE
VEDRMLLSSMAWFSSLLCLAILVCSCCVNICR
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mRNA from alignment at F-serratus_M_contig130:107086..108820-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig130.2228.1 ID=mRNA_F-serratus_M_contig130.2228.1|Name=mRNA_F-serratus_M_contig130.2228.1|organism=Fucus serratus male|type=mRNA|length=1735bp|location=Sequence derived from alignment at F-serratus_M_contig130:107086..108820- (Fucus serratus male)
AGATCGTGCGGGTCAGTCGACAAGGATGTGGAGAGCACATCAAATACGAT
TCATGGCGGTGTGGAAACTGCGTCGCGATTGGAAACGGACAAGATCCACG
CCAGTGATGGCGAAGCTTCTAATCGAGAGGCTATCGAGCAGGGAGGGTCT
CCGGCTGAACAAGCTGGACCTGACACCGAGCTACCCTTAGAGGCAGCGGA
TGACTCAAGAGATCCGAGAGAGGAAGCAGCAGCGAGAACGCAGACGTTGA
GCATGTCGCCGCCTGAGACTTTGCCTTCGGACAATGAGGCGGTTTCTTCG
GGGTCTGCGCTGTACGTCACGGAGGATGCGCAGGGCGGGGAGCCGCTGGT
CCGCGTGGACGACATGGACGCGGCGGCGATGGCGGCGGCCTGTCTGGATA
GGTTAACGTTCAGCGAGTTCCGAGAAGAAGTGCTGTCTCGGACGCAGCAC
GCGCACCATTCCGCGGGCGGCGGCAACGGTGGAGGCGGTGACGCGATCAG
CGGACAATACGAGAGCATTTTCAAGACGCTCATGAACAAGATAAAGACGT
TGGAGATAAATCAGAGTCTATTCAGCTTGTATGTAGGTGAGCACGTGTGT
ATTACCGGTACCTTTACCATTCATGATAATCACCTTCATAACACATCTGG
ATGAATCCTAGGGAGCGAGTCGGAGCTCCACATAACCATGTACAAGGGAA
CAGTCGTTTACTCGTGCTCCTAGTTCTGACAGGCGCTCCGCTGACCCTTT
CGTTTTGTATGTAGGTGAGCACGTGTGTATTACCGGTACCTTTACCATTC
ATGATAATCACCTTCATAACACATCTGGATGAATCCTAGGGAGCGAGTCG
GAGCTCCACATAACCACGTACAAGGGAACGGTCGTTTACTCGTGCTCCTA
GTTCTGACAGGCGCTCCGCTGACCCTTTCGTCGGGGCCGGCACACCTCTC
AGCGTTGCATGGTTAAGATAACACACCACAGGGTAGCCGGGCTTCCTCCA
GCTAGCACCAAGGGTCGGGGCAGCCAGCCGAATTCGCTTTTTTGTGTCGA
TGAGATCGACAGTGGTTTTCTCCGCCCCCACCCCTGCCCCTGTTTCCCCT
GCTTCGCGCGGCAGATGACGTCCACGCGTGCTACCAGGACGTGATTGCGC
AGATCATTCAAGAGCAGAAGCGTGCGCGCGCGTCCCAGTCGGAGCTCCTC
CATGCCCAGACGGTGCACATCATGCACATGAGCGACCAGTGGCCGGCCTT
TCATGCGCTGCAGGTCAGGGTTACGTACGTTGCGTTTTTTTCGTTTTTTC
GGCGTCAAAGGGCGTAACCTAGAAGCAGTAACAGTGCATCGCGAGCGCGG
TGAGAGTGGTGGAAATGATGAATATTGTGCAAGGAAATCGTTGCACTCTA
ACGTCTGCAGGGTCCTGCCTGGCGTGATGCGATCGTACTACATATTATAT
TCAATCTTGAAAAAGAGAACGATGCCCTCCTCCCGTGGCCATCTTGACTG
GTTTTACCGTTGGCTCCCAGCTCCCGTGGTCACTCGTATTCCGTCGGACG
ACGAAATCGAGCGCCATCCCCGTTCCTCACCGCTTCGCCCGGTCGTCTTC
CTGTCCCGTTTATGTACCACAGAAAAGAATTGTCGAGGTCGAGGACAGGA
TGCTCTTGAGCTCGATGGCCTGGTTCAGTAGCCTCCTCTGCCTCGCCATT
CTGGTCTGCTCCTGCTGCGTGAACATCTGCCGTCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig130:107086..108820-

>mRNA_F-serratus_M_contig130.2228.1 ID=mRNA_F-serratus_M_contig130.2228.1|Name=mRNA_F-serratus_M_contig130.2228.1|organism=Fucus serratus male|type=CDS|length=1692bp|location=Sequence derived from alignment at F-serratus_M_contig130:107086..108820- (Fucus serratus male)
AGATCGTGCGGGTCAGTCGACAAGGATGTGGAGAGCACATCAAATACGAT
TCATGGCGGTGTGGAAACTGCGTCGCGATTGGAAACGGACAAGATCCACG
CCAGTGATGGCGAAGCTTCTAATCGAGAGGCTATCGAGCAGGGAGGGTCT
CCGGCTGAACAAGCTGGACCTGACACCGAGCTACCCTTAGAGGCAGCGGA
TGACTCAAGAGATCCGAGAGAGGAAGCAGCAGCGAGAACGCAGACGTTGA
GCATGTCGCCGCCTGAGACTTTGCCTTCGGACAATGAGGCGGTTTCTTCG
GGGTCTGCGCTGTACGTCACGGAGGATGCGCAGGGCGGGGAGCCGCTGGT
CCGCGTGGACGACATGGACGCGGCGGCGATGGCGGCGGCCTGTCTGGATA
GGTTAACGTTCAGCGAGTTCCGAGAAGAAGTGCTGTCTCGGACGCAGCAC
GCGCACCATTCCGCGGGCGGCGGCAACGGTGGAGGCGGTGACGCGATCAG
CGGACAATACGAGAGCATTTTCAAGACGCTCATGAACAAGATAAAGACGT
TGGAGATAAATCAGAGTCTATTCAGCTTGTATGTAGAGATCGTGCGGGTC
AGTCGACAAGGATGTGGAGAGCACATCAAATACGATTCATGGCGGTGTGG
AAACTGCGTCGCGATTGGAAACGGACAAGATCCACGCCAGTGATGGCGAA
GCTTCTAATCGAGAGGCTATCGAGCAGGGAGGGTCTCCGGCTGAACAAGC
TGGACCTGACACCGAGCTACCCTTAGAGGCAGCGGATGACTCAAGAGATC
CGAGAGAGGAAGCAGCAGCGAGAACGCAGACGTTGAGCATGTCGCCGCCT
GAGACTTTGCCTTCGGACAATGAGGCGGTTTCTTCGGGGTCTGCGCTGTA
CGTCACGGAGGATGCGCAGGGCGGGGAGCCGCTGGTCCGCGTGGACGACA
TGGACGCGGCGGCGATGGCGGCGGCCTGTCTGGATAGGTTAACGTTCAGC
GAGTTCCGAGAAGAAGTGCTGTCTCGGACGCAGCACGCGCACCATTCCGC
GGGCGGCGGCAACGGTGGAGGCGGTGACGCGATCAGCGGACAATACGAGA
GCATTTTCAAGACGCTCATGAACAAGATAAAGACGTTGGAGATAAATCAG
AGTCTATTCAGCTTGTATGTAGATGACGTCCACGCGTGCTACCAGGACGT
GATTGCGCAGATCATTCAAGAGCAGAAGCGTGCGCGCGCGTCCCAGTCGG
AGCTCCTCCATGCCCAGACGGTGCACATCATGCACATGAGCGACCAGTGG
CCGGCCTTTCATGCGCTGCAGATGACGTCCACGCGTGCTACCAGGACGTG
ATTGCGCAGATCATTCAAGAGCAGAAGCGTGCGCGCGCGTCCCAGTCGGA
GCTCCTCCATGCCCAGACGGTGCACATCATGCACATGAGCGACCAGTGGC
CGGCCTTTCATGCGCTGCAGAAAAGAATTGTCGAGGTCGAGGACAGGATG
CTCTTGAGCTCGATGGCCTGGTTCAGTAGCCTCCTCTGCCTCGCCATTCT
GGTCTGCTCCTGCTGCGTGAACATCTGCCGTAAAAGAATTGTCGAGGTCG
AGGACAGGATGCTCTTGAGCTCGATGGCCTGGTTCAGTAGCCTCCTCTGC
CTCGCCATTCTGGTCTGCTCCTGCTGCGTGAACATCTGCCGT
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