mRNA_F-serratus_M_contig13.2208.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig13.2208.1
Unique NamemRNA_F-serratus_M_contig13.2208.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig13.2208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig13contigF-serratus_M_contig13:767782..768870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size290
Cds size156
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig13.2208.1prot_F-serratus_M_contig13.2208.1Fucus serratus malepolypeptideF-serratus_M_contig13 767782..768737 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929240.771443-CDS-F-serratus_M_contig13:767781..7679191622929240.771443-CDS-F-serratus_M_contig13:767781..767919Fucus serratus maleCDSF-serratus_M_contig13 767782..767919 -
1690962765.2808654-CDS-F-serratus_M_contig13:767781..7679191690962765.2808654-CDS-F-serratus_M_contig13:767781..767919Fucus serratus maleCDSF-serratus_M_contig13 767782..767919 -
1622929240.7825797-CDS-F-serratus_M_contig13:768719..7687371622929240.7825797-CDS-F-serratus_M_contig13:768719..768737Fucus serratus maleCDSF-serratus_M_contig13 768720..768737 -
1690962765.2900627-CDS-F-serratus_M_contig13:768719..7687371690962765.2900627-CDS-F-serratus_M_contig13:768719..768737Fucus serratus maleCDSF-serratus_M_contig13 768720..768737 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929240.7935913-UTR-F-serratus_M_contig13:768737..7688701622929240.7935913-UTR-F-serratus_M_contig13:768737..768870Fucus serratus maleUTRF-serratus_M_contig13 768738..768870 -
1690962765.299579-UTR-F-serratus_M_contig13:768737..7688701690962765.299579-UTR-F-serratus_M_contig13:768737..768870Fucus serratus maleUTRF-serratus_M_contig13 768738..768870 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig13.2208.1

>prot_F-serratus_M_contig13.2208.1 ID=prot_F-serratus_M_contig13.2208.1|Name=mRNA_F-serratus_M_contig13.2208.1|organism=Fucus serratus male|type=polypeptide|length=52bp
MQSGSQELTNYRGQNVEADVCGFSLPGFWLRKSESTLAQGTGEVVAPPDL
PH
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mRNA from alignment at F-serratus_M_contig13:767782..768870-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig13.2208.1 ID=mRNA_F-serratus_M_contig13.2208.1|Name=mRNA_F-serratus_M_contig13.2208.1|organism=Fucus serratus male|type=mRNA|length=1089bp|location=Sequence derived from alignment at F-serratus_M_contig13:767782..768870- (Fucus serratus male)
GCCTTGTTCGCATGGAGTGGTTCATCGGGAACGTCAACACTCGCAAGCCA
CATTAAAAGGGCACATCCCAGCGTGCATTCGGAACTCATCGTAGCGGGTG
CCTCCTCGCAGGAATCAAGGGAAGAAAGGAAGGATGCAGTCAGGATCACA
GGTGAGGGTTGGCGTTTGAGTCCGTTACAGCCTGTTTTCTGTTTTTACGT
ACAGGTTCGAACAGCAGCAACCCCTGCGCTCCTACCATGGCGGTACTGAC
CGAGCAGCTTTACGCGCGTAGCTGAAAATGAAATTCGAAAGTGTGCCAAA
TACAAAAAAATCGTTTGTGTTGTACTTCATACTGGTACGAAGTACAAAAT
ACCAGTACACAGCTACTGTATAATTGGTTTTCTGTTCTATTAACAAGTTA
TACAGCAGTTGCTCCACCCGTACTTGCTAGCTGGTCTGACATTTTCCAAC
CCATTCGTCCTGCTCTGAAAGGGTTAGTTCCATAAGTCAAAGTGTTACTT
GAACAACGCTATGTCGTGATTCATGTTACAATATTGTAAACTACGTAGTA
TAAATTCTATAAATTTAACGCTCGTGACACCTCGGGTACGTATATATTAT
GTACGTTAATGAAATATTATCCACCATTCATGACCCCTGTCCTGATATGC
TTTTGGTCATTTTCCAACCCATTGGGCCTGCTCTGAAAGGGTTAGTAGGA
TACGTTCCATAAGTCAAGGTGTTGAACAGCGCCATGTCGTGATTCATGTT
ACAATGTTGTAAACTACAGTGTAGTATAAATTATAAATTTAACGCTAGTG
ATACCTCGGGTACGTATATATTACCGGTATGTACTTTGATGAAATATTAT
CCACCATTCATGGCCCCTGTCCTGATATACTTTTGGTCGCACATTGTCTT
GTCCATTCGGCGCGCTCGCTCTATGCCATGAACCACGTTGCGCTTCGACA
GGAACTAACTAATTATCGAGGGCAAAACGTCGAGGCAGATGTGTGTGGCT
TTTCGCTGCCAGGTTTTTGGCTCCGCAAGAGCGAGTCGACGCTTGCTCAG
GGCACGGGCGAGGTTGTGGCGCCACCGGATCTGCCCCAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig13:767782..768870-

>mRNA_F-serratus_M_contig13.2208.1 ID=mRNA_F-serratus_M_contig13.2208.1|Name=mRNA_F-serratus_M_contig13.2208.1|organism=Fucus serratus male|type=CDS|length=312bp|location=Sequence derived from alignment at F-serratus_M_contig13:767782..768870- (Fucus serratus male)
ATGCAGTCAGGATCACAGATGCAGTCAGGATCACAGGAACTAACTAATTA
TCGAGGGCAAAACGTCGAGGCAGATGTGTGTGGCTTTTCGCTGCCAGGTT
TTTGGCTCCGCAAGAGCGAGTCGACGCTTGCTCAGGGCACGGGCGAGGTT
GTGGCGCCACCGGATCTGCCCCATGAACTAACTAATTATCGAGGGCAAAA
CGTCGAGGCAGATGTGTGTGGCTTTTCGCTGCCAGGTTTTTGGCTCCGCA
AGAGCGAGTCGACGCTTGCTCAGGGCACGGGCGAGGTTGTGGCGCCACCG
GATCTGCCCCAT
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