mRNA_F-serratus_M_contig13.2202.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig13.2202.1
Unique NamemRNA_F-serratus_M_contig13.2202.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig13.2202.1 vs. uniprot
Match: D7FYW2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYW2_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 1.740e-75
Identity = 134/250 (53.60%), Postives = 171/250 (68.40%), Query Frame = 1 
Query:  100 ITFGLFCVATSFVVNPSLHTKRLQHDSLAPFMIPPARTRTSSTTRVMMAGFGAKPKETPPVTGAGRGQRAYERQVRSYKGLRAAGAEGIDVYVHRVGGDDKFIFAGKVAWSSEVSAEQAIQWQRDLVLDHVKVLEPLWNTKPSPQMRIFTAPLNTEVNVAKNVLDLTRALAGKGKGQDKATISTDGMTSAQVGFSPEMYEKGQDYYYVRKLEDGRCPAPPAEVKIETMDTLKAAGAV-ADEGLPTTAE*P 846
            I  GL C   SF   P     +L+  S A  MIP  R R+++++RVMM G    P++   V G GRGQ AY+RQV+SY GL  AGAEG DVYVHR G DDKFIF GK AWSS ++ +QA+Q+QR L+L HV++LEP+W  KP+P MRIFTAP+N+E+ VA+N+ DL R L G GKG+D   +  D +T  +VG  PE+YE G+ Y+YVRKL+DG+CPAPP+EV IETMD L A G V A E +   A  P
Sbjct:   11 IALGLLCDVDSFA--PLTAGWQLRQTSSAWHMIPSGRPRSATSSRVMMMGGFGGPEKKKKVVGVGRGQDAYQRQVKSYHGLTEAGAEGADVYVHREG-DDKFIFMGKAAWSSGITVQQALQFQRGLILGHVELLEPMWKDKPAP-MRIFTAPINSEIEVARNIHDLVRVL-GPGKGKD---VKVDKLTPQEVGLRPELYELGEPYFYVRKLDDGKCPAPPSEVMIETMDNLVAKGVVPAKETVDAAAPPP 252
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BLAST of mRNA_F-serratus_M_contig13.2202.1 vs. uniprot
Match: A0A448ZK73_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZK73_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 8.230e-6
Identity = 50/179 (27.93%), Postives = 84/179 (46.93%), Query Frame = 1 
Query:  301 QRAYERQVRSYKGLRAAGAEGI--DVYVHRVGGDDKFIFAGKVAWSSEVSAEQAIQWQRDLVLDHVKVLEPLWNTKPSPQMRIFTAPLNTEVNVAKNVLDLTRALAGKGKGQDKATISTDGMTSAQVGFSPEMYEKGQDYYYVRKLEDGRCPA-----------PPAEVKIETMDTLKA 798
            +R  +R   ++  LR  G + +  DVY       ++  + GKVA  ++VS E  I  Q +++  H   L P+        + I+TAP +TE++VA N  +L  A        +K  +    + +  +GF  E+Y++G++ +   + EDG  PA           PP E   E M+ LKA
Sbjct:   91 ERNVKRCHENFLNLRKVGGKDLCHDVYAKSPLKKEEVWYVGKVAKITDVSLEDCIARQWNIIETHAANLRPIELYPQRGNLEIWTAPGDTELDVAYNRPELVMAR------MEKYEVLAKDLRNNLIGFQGEVYQEGEEGFRTWRKEDG-SPARPEINPGGETRPPTE---EEMEQLKA 259
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BLAST of mRNA_F-serratus_M_contig13.2202.1 vs. uniprot
Match: A0A7S4ENJ4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ENJ4_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.030e-5
Identity = 43/155 (27.74%), Postives = 76/155 (49.03%), Query Frame = 1 
Query:  301 QRAYERQVRSYKGLRAAGAEGI--DVYVHRVGGDDKFIFAGKVAWSSEVSAEQAIQWQRDLVLDHVKVLEPLWNTKPSPQMRIFTAPLNTEVNVAKNVLDLTRALAGKGKGQDKATISTDGMTSAQVGFSPEMYEKGQDYYYVRKLEDGRCPAPP 759
            +R  +R  +++  LR  G + +  DVY       ++  + GKVA  SEVS E  I  Q +++  H   L P+        + ++TAP +TE+ VA N  +L           +K  + +  + +  +GF  E+Y++G++ +   + EDG  PA P
Sbjct:  110 ERNVKRCHQNFLSLRNVGGKDLCNDVYAKSPVQKEEVWYVGKVAKVSEVSLEDCIARQWNVIETHAANLRPIELYGHRGNLELWTAPGDTELEVAYNRPELVMVK------MEKYAVDSKDLRNNLIGFQGEVYQEGEEGFRSWRNEDG-SPARP 257
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig13.2202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FYW2_ECTSI1.740e-7553.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A448ZK73_9STRA8.230e-627.93Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4ENJ4_9STRA3.030e-527.74Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig13contigF-serratus_M_contig13:626115..628283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue6.5e-07
Seed eggNOG ortholog2850.Phatr45146
Hectar predicted targeting categorysignal peptide
EggNOG OGs2EIZK@1,2SP9S@2759,2XGCX@2836
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_002700.1
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size1300
Cds size816
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig13.2202.1prot_F-serratus_M_contig13.2202.1Fucus serratus malepolypeptideF-serratus_M_contig13 626572..628256 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929246.3284879-UTR-F-serratus_M_contig13:626114..6265711622929246.3284879-UTR-F-serratus_M_contig13:626114..626571Fucus serratus maleUTRF-serratus_M_contig13 626115..626571 -
1690962767.2500553-UTR-F-serratus_M_contig13:626114..6265711690962767.2500553-UTR-F-serratus_M_contig13:626114..626571Fucus serratus maleUTRF-serratus_M_contig13 626115..626571 -
1622929246.3746715-UTR-F-serratus_M_contig13:628256..6282831622929246.3746715-UTR-F-serratus_M_contig13:628256..628283Fucus serratus maleUTRF-serratus_M_contig13 628257..628283 -
1690962767.286814-UTR-F-serratus_M_contig13:628256..6282831690962767.286814-UTR-F-serratus_M_contig13:628256..628283Fucus serratus maleUTRF-serratus_M_contig13 628257..628283 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929246.3411813-CDS-F-serratus_M_contig13:626571..6269521622929246.3411813-CDS-F-serratus_M_contig13:626571..626952Fucus serratus maleCDSF-serratus_M_contig13 626572..626952 -
1690962767.2709777-CDS-F-serratus_M_contig13:626571..6269521690962767.2709777-CDS-F-serratus_M_contig13:626571..626952Fucus serratus maleCDSF-serratus_M_contig13 626572..626952 -
1622929246.358554-CDS-F-serratus_M_contig13:627821..6282561622929246.358554-CDS-F-serratus_M_contig13:627821..628256Fucus serratus maleCDSF-serratus_M_contig13 627822..628256 -
1690962767.2789166-CDS-F-serratus_M_contig13:627821..6282561690962767.2789166-CDS-F-serratus_M_contig13:627821..628256Fucus serratus maleCDSF-serratus_M_contig13 627822..628256 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig13.2202.1

>prot_F-serratus_M_contig13.2202.1 ID=prot_F-serratus_M_contig13.2202.1|Name=mRNA_F-serratus_M_contig13.2202.1|organism=Fucus serratus male|type=polypeptide|length=272bp
MSNLIQKSATSTAAMTNSVLLGPLITFGLFCVATSFVVNPSLHTKRLQHD
SLAPFMIPPARTRTSSTTRVMMAGFGAKPKETPPVTGAGRGQRAYERQVR
SYKGLRAAGAEGIDVYVHRVGGDDKFIFAGKVAWSSEVSAEQAIQWQRDL
VLDHVKVLEPLWNTKPSPQMRIFTAPLNTEVNVAKNVLDLTRALAGKGKG
QDKATISTDGMTSAQVGFSPEMYEKGQDYYYVRKLEDGRCPAPPAEVKIE
TMDTLKAAGAVADEGLPTTAE*
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mRNA from alignment at F-serratus_M_contig13:626115..628283-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig13.2202.1 ID=mRNA_F-serratus_M_contig13.2202.1|Name=mRNA_F-serratus_M_contig13.2202.1|organism=Fucus serratus male|type=mRNA|length=2169bp|location=Sequence derived from alignment at F-serratus_M_contig13:626115..628283- (Fucus serratus male)
ATACTTTTCTGTCGCTAGGAGAAAGGCATGAGTAATTTGATTCAGAAAAG
CGCCACATCGACAGCTGCCATGACGAATTCGGTATTGCTTGGGCCGCTGA
TAACGTTTGGGCTATTTTGTGTGGCGACAAGTTTTGTGGTGAACCCTTCC
TTGCACACCAAGCGCCTGCAACATGACAGTCTCGCGCCGTTCATGATCCC
TCCAGCCCGTACTCGTACCAGTAGCACAACTCGGGTCATGATGGCAGGAT
TCGGGGCAAAGCCGAAGGAAACGCCGCCGGTAACAGGAGCGGGGAGAGGA
CAGCGGGCCTACGAGCGCCAAGTTCGCTCCTACAAAGGGTTGCGGGCGGC
GGGGGCCGAGGGAATCGACGTGTACGTACATCGGGTTGGCGGCGACGACA
AATTCATTTTCGCCGGGAAGGTCGCTTGGAGCTCGGAGGTCAGCGCCGAG
CAAGCAATACAGGTGTGTTCCGAGAGGTTAGATCGCGGGGTAGGATCTGG
CAGACGGGTATACACTCGGTGAAACCTTGTCCACCCGCGTCGGGTCTAGG
GAGCCTGGCCTAAAGAGCAACTGCTGCATACTTATAGCGCAACACGAATT
CCACATTTCCACAGCAGTACCTTGTATTATGTTATTATAGTATGATTAGT
ACAGGTACAAAATAAATGGGGAGATTTTGTGGGATTCAGGGAACGGTGAA
GGACCGATAAAGGGCGTCCAAGCTAGTGGACTACTTGACCTCCATCTCCA
AGGTATCCGTCTTTTGCGGCCGACCACAATCATGGACGCATGCGACGTTG
AAATCTGAGAACGCCATACTACACGTGTAACCTGCCAGATGTGTCGCGCT
CACGTCCCGGGTGGATTTAAGATTCGAGTACAGAGCTCAAAGATGTAGAT
TTTCTAAAATATATTTCCTTTCTAGCAGCTAGATTCACCTGATAATTATC
AGAAAGCAAAACCTTGTCTCCTGCCTTGTCAATCTGTGATTTACTTGATG
GTGGCTAATAATATTAATATATACTGGTAGTAATAGTGGGCCAAGGAGAA
CGATACATGAATGTTCATGTACTGACTGGACCTCCCTTCTCCGACACGAT
ACCTTTGAATCTAACAAAGTTTCCCCGCCAAACTCAAGGAGGCACCCGAT
TCGCTGAGCTGCTGTACCCGCGACTACTTCTCTCGCGTTCGGTTATTGAC
GGGAATGACGGGAATCGTGTTTCTTGTGGATTTTCAAAATATTTCGTAGT
ACACTGGTCGTCGATAATGAACCAAATCGCCCGCGATGCCCCCCGGCCGA
CTACGACGTGCTCTCCGTCAAAACGCAACAGTGGCAAAGGGACCTTGTTC
TGGATCACGTGAAGGTACTCGAGCCCCTGTGGAACACCAAGCCATCGCCC
CAGATGCGCATATTCACCGCGCCGCTCAATACCGAGGTCAACGTTGCCAA
GAACGTTCTCGACCTCACGCGCGCGTTGGCAGGCAAGGGCAAGGGCCAGG
ACAAAGCCACCATTAGCACGGACGGAATGACGTCCGCGCAGGTGGGTTTC
TCCCCTGAGATGTATGAGAAGGGTCAGGACTACTATTACGTGAGGAAGCT
GGAGGACGGTCGATGTCCCGCGCCACCTGCGGAGGTGAAGATTGAAACCA
TGGACACGCTGAAGGCAGCGGGAGCCGTGGCCGATGAGGGGTTGCCTACT
ACGGCAGAGTGACCCATCTTGAGCGATTAAGTCTATTTCCGAATGTACGG
TAGTTAATTTGCGTTCATATGGAGCTGCGGTGCACCTCAACCATGTGGTT
TTGGGGGATGTGGTATTGTGGCCTTGAGCGCGGGATGGTTGGCGCACAGG
GCTCACGGCTCTGGTGCATTGAGAAAGTCTTGTGAAATGAGTGCAAAACA
TAAGCAATGTCTAAAACCGTATGATGTTATCCAGATCGGTATGGCAGTAG
AGGCTGGCGCTGATCGCGATGAAGCTAACCCAGCAGGCACGCGAGTGCAC
AAGATAAAGAAAGAAGCTGATGTTGAAAATGGCGCTTACGGCCAAGAAAA
GCTTGAGAACAATCACCCAATGCAGAAGTTCAGGGAGCTAGTGAGGTGCT
CGTCAGAAGCTACCTCTCGTGAAAAGCTAGCCGTCGTGGGGAATGAGTAC
GTGTGCGAGCCCTACCACC
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Coding sequence (CDS) from alignment at F-serratus_M_contig13:626115..628283-

>mRNA_F-serratus_M_contig13.2202.1 ID=mRNA_F-serratus_M_contig13.2202.1|Name=mRNA_F-serratus_M_contig13.2202.1|organism=Fucus serratus male|type=CDS|length=1632bp|location=Sequence derived from alignment at F-serratus_M_contig13:626115..628283- (Fucus serratus male)
ATGAGTAATTTGATTCAGAAAAGCGCCACATCGACAGCTGCCATGACGAA
TTCGGTATTGCTTGGGCCGCTGATAACGTTTGGGCTATTTTGTGTGGCGA
CAAGTTTTGTGGTGAACCCTTCCTTGCACACCAAGCGCCTGCAACATGAC
AGTCTCGCGCCGTTCATGATCCCTCCAGCCCGTACTCGTACCAGTAGCAC
AACTCGGGTCATGATGGCAGGATTCGGGGCAAAGCCGAAGGAAACGCCGC
CGGTAACAGGAGCGGGGAGAGGACAGCGGGCCTACGAGCGCCAAGTTCGC
TCCTACAAAGGGTTGCGGGCGGCGGGGGCCGAGGGAATCGACGTGTACGT
ACATCGGGTTGGCGGCGACGACAAATTCATTTTCGCCGGGAAGGTCGCTT
GGAGCTCGGAGGTCAGCGCCGAGCAAGCAATACAGATGAGTAATTTGATT
CAGAAAAGCGCCACATCGACAGCTGCCATGACGAATTCGGTATTGCTTGG
GCCGCTGATAACGTTTGGGCTATTTTGTGTGGCGACAAGTTTTGTGGTGA
ACCCTTCCTTGCACACCAAGCGCCTGCAACATGACAGTCTCGCGCCGTTC
ATGATCCCTCCAGCCCGTACTCGTACCAGTAGCACAACTCGGGTCATGAT
GGCAGGATTCGGGGCAAAGCCGAAGGAAACGCCGCCGGTAACAGGAGCGG
GGAGAGGACAGCGGGCCTACGAGCGCCAAGTTCGCTCCTACAAAGGGTTG
CGGGCGGCGGGGGCCGAGGGAATCGACGTGTACGTACATCGGGTTGGCGG
CGACGACAAATTCATTTTCGCCGGGAAGGTCGCTTGGAGCTCGGAGGTCA
GCGCCGAGCAAGCAATACAGTGGCAAAGGGACCTTGTTCTGGATCACGTG
AAGGTACTCGAGCCCCTGTGGAACACCAAGCCATCGCCCCAGATGCGCAT
ATTCACCGCGCCGCTCAATACCGAGGTCAACGTTGCCAAGAACGTTCTCG
ACCTCACGCGCGCGTTGGCAGGCAAGGGCAAGGGCCAGGACAAAGCCACC
ATTAGCACGGACGGAATGACGTCCGCGCAGGTGGGTTTCTCCCCTGAGAT
GTATGAGAAGGGTCAGGACTACTATTACGTGAGGAAGCTGGAGGACGGTC
GATGTCCCGCGCCACCTGCGGAGGTGAAGATTGAAACCATGGACACGCTG
AAGGCAGCGGGAGCCGTGGCCGATGAGGGGTTGCCTACTACGGCAGAGTG
ATGGCAAAGGGACCTTGTTCTGGATCACGTGAAGGTACTCGAGCCCCTGT
GGAACACCAAGCCATCGCCCCAGATGCGCATATTCACCGCGCCGCTCAAT
ACCGAGGTCAACGTTGCCAAGAACGTTCTCGACCTCACGCGCGCGTTGGC
AGGCAAGGGCAAGGGCCAGGACAAAGCCACCATTAGCACGGACGGAATGA
CGTCCGCGCAGGTGGGTTTCTCCCCTGAGATGTATGAGAAGGGTCAGGAC
TACTATTACGTGAGGAAGCTGGAGGACGGTCGATGTCCCGCGCCACCTGC
GGAGGTGAAGATTGAAACCATGGACACGCTGAAGGCAGCGGGAGCCGTGG
CCGATGAGGGGTTGCCTACTACGGCAGAGTGA
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