mRNA_F-serratus_M_contig13.2200.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig13.2200.1
Unique NamemRNA_F-serratus_M_contig13.2200.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig13.2200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig13contigF-serratus_M_contig13:609330..611258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1360
Cds size1122
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig13.2200.1prot_F-serratus_M_contig13.2200.1Fucus serratus malepolypeptideF-serratus_M_contig13 609412..611102 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929240.6820867-UTR-F-serratus_M_contig13:609329..6094111622929240.6820867-UTR-F-serratus_M_contig13:609329..609411Fucus serratus maleUTRF-serratus_M_contig13 609330..609411 -
1690962765.2246127-UTR-F-serratus_M_contig13:609329..6094111690962765.2246127-UTR-F-serratus_M_contig13:609329..609411Fucus serratus maleUTRF-serratus_M_contig13 609330..609411 -
1622929240.734435-UTR-F-serratus_M_contig13:611102..6112581622929240.734435-UTR-F-serratus_M_contig13:611102..611258Fucus serratus maleUTRF-serratus_M_contig13 611103..611258 -
1690962765.2720828-UTR-F-serratus_M_contig13:611102..6112581690962765.2720828-UTR-F-serratus_M_contig13:611102..611258Fucus serratus maleUTRF-serratus_M_contig13 611103..611258 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929240.693828-CDS-F-serratus_M_contig13:609411..6103811622929240.693828-CDS-F-serratus_M_contig13:609411..610381Fucus serratus maleCDSF-serratus_M_contig13 609412..610381 -
1690962765.2368212-CDS-F-serratus_M_contig13:609411..6103811690962765.2368212-CDS-F-serratus_M_contig13:609411..610381Fucus serratus maleCDSF-serratus_M_contig13 609412..610381 -
1622929240.7090087-CDS-F-serratus_M_contig13:610700..6108241622929240.7090087-CDS-F-serratus_M_contig13:610700..610824Fucus serratus maleCDSF-serratus_M_contig13 610701..610824 -
1690962765.2472453-CDS-F-serratus_M_contig13:610700..6108241690962765.2472453-CDS-F-serratus_M_contig13:610700..610824Fucus serratus maleCDSF-serratus_M_contig13 610701..610824 -
1622929240.719804-CDS-F-serratus_M_contig13:611074..6111021622929240.719804-CDS-F-serratus_M_contig13:611074..611102Fucus serratus maleCDSF-serratus_M_contig13 611075..611102 -
1690962765.2628875-CDS-F-serratus_M_contig13:611074..6111021690962765.2628875-CDS-F-serratus_M_contig13:611074..611102Fucus serratus maleCDSF-serratus_M_contig13 611075..611102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig13.2200.1

>prot_F-serratus_M_contig13.2200.1 ID=prot_F-serratus_M_contig13.2200.1|Name=mRNA_F-serratus_M_contig13.2200.1|organism=Fucus serratus male|type=polypeptide|length=374bp
MWRDDEELTAPAMVISSLGGLVFRKDTLAAKDLRRARLLRGALKPQLGRP
RGPPGRGLFFPRAANLEQGLSGEGVHHRHVLVDRACCPLEGKNSLDRSSR
RGFTSKTKATKGLGALEEAEPRKRGWKAQGMLAGEWKDLLGRQRRALPFE
ATPAQSARAGTCHESVSSSCAATEISYERLLEELRERLPQSPRIAARTTG
GVNAAGVIDRRSQESYKRHRHDSSGWDAIAAGVPPGRTILQAGTGTPAAP
LDTKWKSRPSRDGRSRDSGASPPSTVSRGDMLIREETFTRSSRYVVVRPR
VGNSSGQPTGSWASPLFAHKNKAPYPSRWLSATAASGDESSPSAAMVAAA
KAQERALPLLQVCATNFMDSPWP*
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mRNA from alignment at F-serratus_M_contig13:609330..611258-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig13.2200.1 ID=mRNA_F-serratus_M_contig13.2200.1|Name=mRNA_F-serratus_M_contig13.2200.1|organism=Fucus serratus male|type=mRNA|length=1929bp|location=Sequence derived from alignment at F-serratus_M_contig13:609330..611258- (Fucus serratus male)
GAAGGATTGCGGGAAACATCGAAATTTCTAACGAATAGTTGCCTAAACGA
AGTGTAACGTCTTCGGTATCTCATCAAGCGCGTTTGAAACTACAAGTATA
GTCTAACTCGCCACATATTTATTTGTTGAACATGATGAACGTACCTACGC
GACGGAATGTGGCGGGACGATGAAGAGCTTACAGGTGATTCTTGATTTTT
TCACGCCCACGTCGGATAGTGATTCGGATAGAGTGTGCATAAATCTTTAT
GCAGAGCGTGTTGCACCCTCAAAGCGTGGATTGAATGTCTCGCGTGAAAA
TCTACTTGTGATATAACAGGCTTTTGTCCGAGAACGCAGGGTACTTGTGT
AGCGCCAAGCCGCACACTGAAACGAAATAATTCCGACCGCTCATGCCCGC
CCCCTTTTGGTGGCACAACTCTCGTTGCGAACAGCACCGGCTATGGTAAT
AAGCTCGCTCGGAGGCCTTGTGTTCAGGAAGGACACCCTGGCAGCGAAGG
ATCTACGTCGAGCTCGTTTGCTCCGTGGGGCGCTCAAGCCTCAGTTGGGA
CGTCCTCGGTACGGAAACAACTGTTTATCCCTTGCTGCTACGTGGAGTTG
CGGCTCTGAGACGGCATTCACCGCCAACGTTAGAAAATACCGCCAGTCTC
TAAACCAGCAATTGCTCGCGATGTTGTTTTTTTTAACCTTTGCGTCCGTA
TTTCGTAGTCATCATGTACTACAGTACGTAAAATCGTCGCGGCTACGCAC
CATGGTGTCGACCTCTCAACCTTCTTAATGCAGTCTCCGTAGATGCCCCT
AGAACGCGTTTATATTTTGTACCACCTCTTCTACGGTTGCTGCCAACGTC
TCGTTCCACGCCACCACCACCACGAAGAGGACCTCCTGGGCGGGGACTTT
TCTTCCCGAGGGCGGCGAATCTTGAACAGGGCTTGAGTGGCGAGGGCGTA
CACCATCGCCACGTGCTCGTCGACAGGGCTTGTTGTCCGCTGGAAGGCAA
AAATAGCCTAGATCGATCCTCACGACGGGGTTTTACGAGTAAAACTAAGG
CGACAAAGGGGTTAGGCGCGCTAGAAGAAGCAGAACCACGCAAACGAGGG
TGGAAGGCGCAAGGAATGTTGGCAGGGGAATGGAAAGATCTCCTCGGGAG
ACAGAGGCGCGCGCTTCCATTCGAAGCAACTCCCGCACAGTCAGCCAGGG
CGGGAACTTGTCATGAGTCGGTATCTTCATCTTGCGCGGCGACAGAGATC
AGCTACGAGAGACTTCTTGAGGAGCTTCGAGAGCGCTTACCGCAATCCCC
ACGTATTGCTGCTAGAACGACTGGCGGCGTGAACGCGGCAGGTGTGATTG
ACAGACGGAGTCAAGAGAGCTACAAGCGGCATAGGCACGATAGCAGCGGC
TGGGACGCGATCGCCGCCGGAGTTCCACCGGGTAGGACAATATTACAAGC
AGGTACAGGTACCCCCGCAGCGCCATTAGATACAAAATGGAAAAGCCGGC
CATCAAGAGACGGAAGGTCGCGGGACAGCGGCGCCTCGCCACCATCCACT
GTTTCTAGGGGAGACATGTTAATCAGAGAGGAGACGTTCACAAGATCTTC
CCGGTATGTGGTAGTGCGGCCGAGAGTTGGCAACAGCTCAGGTCAACCAA
CGGGATCCTGGGCCTCGCCGCTGTTTGCACACAAGAACAAGGCTCCGTAT
CCTAGTAGATGGCTATCTGCGACCGCGGCATCGGGAGATGAATCCAGCCC
TTCCGCGGCGATGGTGGCCGCTGCCAAGGCTCAAGAACGAGCGCTGCCGT
TACTGCAAGTTTGCGCGACGAATTTTATGGACTCTCCATGGCCGTGACTC
GTGGGGGTGCAATACTCTGTTACACGCCTCGTACGTCTACGGTGGCAAGA
AAGTCCACTCCTGGAGGACAAAAACCCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig13:609330..611258-

>mRNA_F-serratus_M_contig13.2200.1 ID=mRNA_F-serratus_M_contig13.2200.1|Name=mRNA_F-serratus_M_contig13.2200.1|organism=Fucus serratus male|type=CDS|length=2244bp|location=Sequence derived from alignment at F-serratus_M_contig13:609330..611258- (Fucus serratus male)
ATGTGGCGGGACGATGAAGAGCTTACAGATGTGGCGGGACGATGAAGAGC
TTACAGCACCGGCTATGGTAATAAGCTCGCTCGGAGGCCTTGTGTTCAGG
AAGGACACCCTGGCAGCGAAGGATCTACGTCGAGCTCGTTTGCTCCGTGG
GGCGCTCAAGCCTCAGTTGGGACGTCCTCGCACCGGCTATGGTAATAAGC
TCGCTCGGAGGCCTTGTGTTCAGGAAGGACACCCTGGCAGCGAAGGATCT
ACGTCGAGCTCGTTTGCTCCGTGGGGCGCTCAAGCCTCAGTTGGGACGTC
CTCGAGGACCTCCTGGGCGGGGACTTTTCTTCCCGAGGGCGGCGAATCTT
GAACAGGGCTTGAGTGGCGAGGGCGTACACCATCGCCACGTGCTCGTCGA
CAGGGCTTGTTGTCCGCTGGAAGGCAAAAATAGCCTAGATCGATCCTCAC
GACGGGGTTTTACGAGTAAAACTAAGGCGACAAAGGGGTTAGGCGCGCTA
GAAGAAGCAGAACCACGCAAACGAGGGTGGAAGGCGCAAGGAATGTTGGC
AGGGGAATGGAAAGATCTCCTCGGGAGACAGAGGCGCGCGCTTCCATTCG
AAGCAACTCCCGCACAGTCAGCCAGGGCGGGAACTTGTCATGAGTCGGTA
TCTTCATCTTGCGCGGCGACAGAGATCAGCTACGAGAGACTTCTTGAGGA
GCTTCGAGAGCGCTTACCGCAATCCCCACGTATTGCTGCTAGAACGACTG
GCGGCGTGAACGCGGCAGGTGTGATTGACAGACGGAGTCAAGAGAGCTAC
AAGCGGCATAGGCACGATAGCAGCGGCTGGGACGCGATCGCCGCCGGAGT
TCCACCGGGTAGGACAATATTACAAGCAGGTACAGGTACCCCCGCAGCGC
CATTAGATACAAAATGGAAAAGCCGGCCATCAAGAGACGGAAGGTCGCGG
GACAGCGGCGCCTCGCCACCATCCACTGTTTCTAGGGGAGACATGTTAAT
CAGAGAGGAGACGTTCACAAGATCTTCCCGGTATGTGGTAGTGCGGCCGA
GAGTTGGCAACAGCTCAGGTCAACCAACGGGATCCTGGGCCTCGCCGCTG
TTTGCACACAAGAACAAGGCTCCGTATCCTAGTAGATGGCTATCTGCGAC
CGCGGCATCGGGAGATGAATCCAGCCCTTCCGCGGCGATGGTGGCCGCTG
CCAAGGCTCAAGAACGAGCGCTGCCGTTACTGCAAGTTTGCGCGACGAAT
TTTATGGACTCTCCATGGCCGTGAAGGACCTCCTGGGCGGGGACTTTTCT
TCCCGAGGGCGGCGAATCTTGAACAGGGCTTGAGTGGCGAGGGCGTACAC
CATCGCCACGTGCTCGTCGACAGGGCTTGTTGTCCGCTGGAAGGCAAAAA
TAGCCTAGATCGATCCTCACGACGGGGTTTTACGAGTAAAACTAAGGCGA
CAAAGGGGTTAGGCGCGCTAGAAGAAGCAGAACCACGCAAACGAGGGTGG
AAGGCGCAAGGAATGTTGGCAGGGGAATGGAAAGATCTCCTCGGGAGACA
GAGGCGCGCGCTTCCATTCGAAGCAACTCCCGCACAGTCAGCCAGGGCGG
GAACTTGTCATGAGTCGGTATCTTCATCTTGCGCGGCGACAGAGATCAGC
TACGAGAGACTTCTTGAGGAGCTTCGAGAGCGCTTACCGCAATCCCCACG
TATTGCTGCTAGAACGACTGGCGGCGTGAACGCGGCAGGTGTGATTGACA
GACGGAGTCAAGAGAGCTACAAGCGGCATAGGCACGATAGCAGCGGCTGG
GACGCGATCGCCGCCGGAGTTCCACCGGGTAGGACAATATTACAAGCAGG
TACAGGTACCCCCGCAGCGCCATTAGATACAAAATGGAAAAGCCGGCCAT
CAAGAGACGGAAGGTCGCGGGACAGCGGCGCCTCGCCACCATCCACTGTT
TCTAGGGGAGACATGTTAATCAGAGAGGAGACGTTCACAAGATCTTCCCG
GTATGTGGTAGTGCGGCCGAGAGTTGGCAACAGCTCAGGTCAACCAACGG
GATCCTGGGCCTCGCCGCTGTTTGCACACAAGAACAAGGCTCCGTATCCT
AGTAGATGGCTATCTGCGACCGCGGCATCGGGAGATGAATCCAGCCCTTC
CGCGGCGATGGTGGCCGCTGCCAAGGCTCAAGAACGAGCGCTGCCGTTAC
TGCAAGTTTGCGCGACGAATTTTATGGACTCTCCATGGCCGTGA
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