mRNA_F-serratus_M_contig13.2189.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig13.2189.1
Unique NamemRNA_F-serratus_M_contig13.2189.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig13.2189.1 vs. uniprot
Match: D7FYV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV6_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.130e-9
Identity = 73/202 (36.14%), Postives = 99/202 (49.01%), Query Frame = 1 
Query:  283 LGGQMAAKEPARRERKSADITSVGVETSGGENVVGETTTAKAI-------YARKLREQIASHRADKRLEREKDRSASANNGPAWLEDATEGRERRRRSLKENYAEQLRSQIAERASARRACVSKSPTRPEEFIKHTSNNQAKT-----VVGGNVQNE----RQQRMNHQREYAEALRRDMAVPKTDSLGRSLEDITSPSKTR 840
            L  QMAAKE A+R  K  ++ +     +G   + G T   KA        YA +LR QIA   A K + + +    +A   P   +D  E      +   E Y +QL  ++    S+      +   R  +   H S  + +T     +  G V N     RQ+R+NHQREYAEALRRDMA PK DSLGR + DITSPS+TR
Sbjct:  143 LREQMAAKENAQRAAK-GEMENSRSANAGPSWIEGATEGRKARRRRSNTEYAEQLRAQIA---AQKSINQAQQSLVAARVQPP--KDMFE------QGGYEKYYQQLHQRLLGGVSSFDYQSGEPERRRSQIDDHRSQGRPRTEEKISLSRGEVSNPLATARQERVNHQREYAEALRRDMAAPKVDSLGRPIGDITSPSRTR 332
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BLAST of mRNA_F-serratus_M_contig13.2189.1 vs. uniprot
Match: A0A6H5KLL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL2_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 6.420e-9
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:  718 RQQRMNHQREYAEALRRDMAVPKTDSLGRSLEDITSPSKTR 840
            RQ+R+NHQREYAEALRRDMA PK DSLGR + DITSPS+TR
Sbjct:  292 RQERVNHQREYAEALRRDMAAPKVDSLGRPIGDITSPSRTR 332
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig13.2189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYV6_ECTSI1.130e-936.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLL2_9PHAE6.420e-980.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig13contigF-serratus_M_contig13:420851..422733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1018
Cds size1017
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig13.2189.1prot_F-serratus_M_contig13.2189.1Fucus serratus malepolypeptideF-serratus_M_contig13 420851..422733 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929243.509362-CDS-F-serratus_M_contig13:420850..4215691622929243.509362-CDS-F-serratus_M_contig13:420850..421569Fucus serratus maleCDSF-serratus_M_contig13 420851..421569 +
1690962766.0886736-CDS-F-serratus_M_contig13:420850..4215691690962766.0886736-CDS-F-serratus_M_contig13:420850..421569Fucus serratus maleCDSF-serratus_M_contig13 420851..421569 +
1622929243.5270374-CDS-F-serratus_M_contig13:421970..4220541622929243.5270374-CDS-F-serratus_M_contig13:421970..422054Fucus serratus maleCDSF-serratus_M_contig13 421971..422054 +
1690962766.0997438-CDS-F-serratus_M_contig13:421970..4220541690962766.0997438-CDS-F-serratus_M_contig13:421970..422054Fucus serratus maleCDSF-serratus_M_contig13 421971..422054 +
1622929243.541198-CDS-F-serratus_M_contig13:422519..4227331622929243.541198-CDS-F-serratus_M_contig13:422519..422733Fucus serratus maleCDSF-serratus_M_contig13 422520..422733 +
1690962766.1092656-CDS-F-serratus_M_contig13:422519..4227331690962766.1092656-CDS-F-serratus_M_contig13:422519..422733Fucus serratus maleCDSF-serratus_M_contig13 422520..422733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig13.2189.1

>prot_F-serratus_M_contig13.2189.1 ID=prot_F-serratus_M_contig13.2189.1|Name=mRNA_F-serratus_M_contig13.2189.1|organism=Fucus serratus male|type=polypeptide|length=339bp
PNYPLEQSENHFSRQVDTAPSPDDCCGGSSYGDGDGERNQATEEKYIAIA
LSDPRVVKVDNGAPSWPPKSKQTTTAEQDCNGFSHPTVRYATSRLGGQMA
AKEPARRERKSADITSVGVETSGGENVVGETTTAKAIYARKLREQIASHR
ADKRLEREKDRSASANNGPAWLEDATEGRERRRRSLKENYAEQLRSQIAE
RASARRACVSKSPTRPEEFIKHTSNNQAKTVVGGNVQNERQQRMNHQREY
AEALRRDMAVPKTDSLGRSLEDITSPSKTRREHLGNFYPSSHLVGDRRQQ
FEEPTQRFHRPGPQHSSHTREYGQHQPLSGDGTLRDLPC
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mRNA from alignment at F-serratus_M_contig13:420851..422733+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig13.2189.1 ID=mRNA_F-serratus_M_contig13.2189.1|Name=mRNA_F-serratus_M_contig13.2189.1|organism=Fucus serratus male|type=mRNA|length=1883bp|location=Sequence derived from alignment at F-serratus_M_contig13:420851..422733+ (Fucus serratus male)
CCGAATTATCCCTTAGAGCAATCTGAGAATCATTTTTCGAGACAAGTCGA
TACGGCGCCCTCCCCCGACGACTGCTGTGGAGGAAGTAGTTATGGTGACG
GTGACGGCGAACGAAATCAGGCGACGGAGGAAAAATACATTGCTATTGCT
CTGAGCGATCCGCGGGTGGTGAAGGTGGATAATGGCGCGCCATCATGGCC
ACCAAAGTCGAAGCAGACTACTACTGCTGAGCAAGATTGCAACGGATTTT
CTCACCCCACGGTCAGATACGCCACCAGTCGCCTGGGGGGACAAATGGCC
GCCAAGGAACCAGCGAGGCGTGAGAGGAAAAGTGCCGACATCACATCTGT
CGGGGTAGAAACCAGCGGTGGAGAGAATGTAGTCGGCGAGACGACCACTG
CCAAGGCGATCTATGCCCGAAAGCTCCGTGAGCAAATAGCCTCGCACAGG
GCTGACAAACGTTTAGAACGTGAAAAGGATCGCTCTGCCTCAGCAAATAA
TGGGCCAGCGTGGCTCGAAGATGCGACAGAAGGAAGAGAAAGACGACGCA
GGAGCTTGAAGGAGAATTACGCCGAGCAGTTGCGGAGTCAGATAGCTGAA
CGGGCTAGTGCCCGGCGAGCTTGTGTATCTAAATCACCTACTCGGCCGGA
AGAGTTCATTAAGCATACATCGAATAATCAAGCGAAGACGGTCGTGGGTG
GCAACGTACAAAACGAGAGGTATGAGGGCCGGGGATCGCAGCTGCCATTT
GACAAATCGTTGACATTTTGTAGGTGATCAACCCGTACCAGAACGACTGG
GCATCCCGTATACAGGTCACGATGTATCTCAGACTCTCCGATGTCTCATG
TTCCTTCCCAATGTAATACAGAGTCGGCCTGCCCACTGAGCACCTCTTTC
AATTTAATAGTACCTGAAAACGCCTTTTTATAAAAAGTTGCAGTCACGGT
ACGCTCTAGAGCACGTCTCGGACATTATTTCTGTCTTTCGAAGTTGGAGC
TCCACCTACGTAAAAGCCTACCCCTGCCCTTCCACTCCGCCTTTTTTTGT
TGGGTACTTATTGTACCCGGTACGTAATTAGCTGACTTTGGGGACTTGTC
GCGTGTTGACGTCATCATAGGCAACAACGGATGAACCACCAGCGGGAGTA
TGCTGAAGCGCTTCGGAGGGACATGGCCGTGCCAAAAACCGACTCATTAG
GAAGGTACTACTGTATACAGTATTTGATCGATGGTCAACCGACGATTGGA
CCATGCCGCATCTACAGCAGAATAAGTGTACACGTGGGCGGCGCAAGCTC
CACTTCACGCTGTGAACTGACGTTTCAATCCCGAACGAAGTTGTCGCGTC
GACTGTGCAATTTCTGCGTGAAAAACTACTTCTTGCTCCAGTGCCCACCG
TGGCGGTGCATGGCCTGCCTTTTAAGTGAATTGTTATTTTATTACATATT
CGTAACACTTCAGACACAATTAGACTACTACCAATAACTGAATAAGGGCC
ATGTAGGGGATATCATCAAGGGAATCATCCGGAAAAGGGTGGATAATGTG
ATCCGCTACAACGGAACTCTCAGTTCCAATAACGCTGCACCGACCATGCT
TGGTATCCACGCCACGCCTGAATGCCCGTCGATGTATATTGTATGTTTAC
CGCTTCCAACCACGGGAAGATCCCTCGAAGACATTACCAGCCCCTCGAAG
ACTCGCCGAGAGCACCTGGGAAACTTCTATCCATCTTCGCATCTTGTCGG
CGATCGGCGGCAGCAGTTCGAAGAGCCTACTCAACGTTTTCATCGACCAG
GGCCCCAGCACAGCAGCCACACGAGGGAATACGGTCAACACCAGCCGTTA
TCAGGAGACGGTACGCTTCGAGATCTGCCCTGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig13:420851..422733+

>mRNA_F-serratus_M_contig13.2189.1 ID=mRNA_F-serratus_M_contig13.2189.1|Name=mRNA_F-serratus_M_contig13.2189.1|organism=Fucus serratus male|type=CDS|length=2034bp|location=Sequence derived from alignment at F-serratus_M_contig13:420851..422733+ (Fucus serratus male)
CCGAATTATCCCTTAGAGCAATCTGAGAATCATTTTTCGAGACAAGTCGA
TACGGCGCCCTCCCCCGACGACTGCTGTGGAGGAAGTAGTTATGGTGACG
GTGACGGCGAACGAAATCAGGCGACGGAGGAAAAATACATTGCTATTGCT
CTGAGCGATCCGCGGGTGGTGAAGGTGGATAATGGCGCGCCATCATGGCC
ACCAAAGTCGAAGCAGACTACTACTGCTGAGCAAGATTGCAACGGATTTT
CTCACCCCACGGTCAGATACGCCACCAGTCGCCTGGGGGGACAAATGGCC
GCCAAGGAACCAGCGAGGCGTGAGAGGAAAAGTGCCGACATCACATCTGT
CGGGGTAGAAACCAGCGGTGGAGAGAATGTAGTCGGCGAGACGACCACTG
CCAAGGCGATCTATGCCCGAAAGCTCCGTGAGCAAATAGCCTCGCACAGG
GCTGACAAACGTTTAGAACGTGAAAAGGATCGCTCTGCCTCAGCAAATAA
TGGGCCAGCGTGGCTCGAAGATGCGACAGAAGGAAGAGAAAGACGACGCA
GGAGCTTGAAGGAGAATTACGCCGAGCAGTTGCGGAGTCAGATAGCTGAA
CGGGCTAGTGCCCGGCGAGCTTGTGTATCTAAATCACCTACTCGGCCGGA
AGAGTTCATTAAGCATACATCGAATAATCAAGCGAAGACGGTCGTGGGTG
GCAACGTACAAAACGAGAGCCGAATTATCCCTTAGAGCAATCTGAGAATC
ATTTTTCGAGACAAGTCGATACGGCGCCCTCCCCCGACGACTGCTGTGGA
GGAAGTAGTTATGGTGACGGTGACGGCGAACGAAATCAGGCGACGGAGGA
AAAATACATTGCTATTGCTCTGAGCGATCCGCGGGTGGTGAAGGTGGATA
ATGGCGCGCCATCATGGCCACCAAAGTCGAAGCAGACTACTACTGCTGAG
CAAGATTGCAACGGATTTTCTCACCCCACGGTCAGATACGCCACCAGTCG
CCTGGGGGGACAAATGGCCGCCAAGGAACCAGCGAGGCGTGAGAGGAAAA
GTGCCGACATCACATCTGTCGGGGTAGAAACCAGCGGTGGAGAGAATGTA
GTCGGCGAGACGACCACTGCCAAGGCGATCTATGCCCGAAAGCTCCGTGA
GCAAATAGCCTCGCACAGGGCTGACAAACGTTTAGAACGTGAAAAGGATC
GCTCTGCCTCAGCAAATAATGGGCCAGCGTGGCTCGAAGATGCGACAGAA
GGAAGAGAAAGACGACGCAGGAGCTTGAAGGAGAATTACGCCGAGCAGTT
GCGGAGTCAGATAGCTGAACGGGCTAGTGCCCGGCGAGCTTGTGTATCTA
AATCACCTACTCGGCCGGAAGAGTTCATTAAGCATACATCGAATAATCAA
GCGAAGACGGTCGTGGGTGGCAACGTACAAAACGAGAGGCAACAACGGAT
GAACCACCAGCGGGAGTATGCTGAAGCGCTTCGGAGGGACATGGCCGTGC
CAAAAACCGACTCATTAGGAAGGCAACAACGGATGAACCACCAGCGGGAG
TATGCTGAAGCGCTTCGGAGGGACATGGCCGTGCCAAAAACCGACTCATT
AGGAAGATCCCTCGAAGACATTACCAGCCCCTCGAAGACTCGCCGAGAGC
ACCTGGGAAACTTCTATCCATCTTCGCATCTTGTCGGCGATCGGCGGCAG
CAGTTCGAAGAGCCTACTCAACGTTTTCATCGACCAGGGCCCCAGCACAG
CAGCCACACGAGGGAATACGGTCAACACCAGCCGTTATCAGGAGACGGTA
CGCTTCGAGATCTGCCCTGCATCCCTCGAAGACATTACCAGCCCCTCGAA
GACTCGCCGAGAGCACCTGGGAAACTTCTATCCATCTTCGCATCTTGTCG
GCGATCGGCGGCAGCAGTTCGAAGAGCCTACTCAACGTTTTCATCGACCA
GGGCCCCAGCACAGCAGCCACACGAGGGAATACGGTCAACACCAGCCGTT
ATCAGGAGACGGTACGCTTCGAGATCTGCCCTGC
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