mRNA_F-serratus_M_contig13.2180.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig13.2180.1 vs. uniprot
Match: A0A6H5LE45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE45_9PHAE) HSP 1 Score: 104 bits (260), Expect = 1.550e-18 Identity = 132/341 (38.71%), Postives = 158/341 (46.33%), Query Frame = 3
Query: 990 PPQRAMHRGVSAPRLYPSIQDDHI-------SG----GXXXXXXXPGGQRP-FGTGLSVEELKAMTKQRLEQQQG---------------RSSPSFPGR--------SSXXXXXXXXXXXXXXXXXXXXXXXXWRRSGSAGSAAMMDEHSRGMRDDGTSVPPAPFRRASSQ-----------QTRGMLQLDHGRRVYGGS-GRMEMMALTLEDRMRTLPTETGAGG-----ISPRILSQPSSPCFSATSHSSSACT-SP--------------GGGRFHRDGRSGVGAGXXXXXXXXXXXSAYAHATHVPPPGFADNGPTAV----DGG-YQTVTLPLSGD 1796
PP+R + RG+SAPR+Y + +D I SG G GGQRP FGTGLSVE+LK +TK RL+QQ R SP+F GR SSXXXXXXXXXXXXXX WRRSGSA A FRRA+S + +G + RR +G + GRME LE+RMR + +ET GG +SPRILSQPSSPCFSA SHSSSAC SP G H DGR G G PPGF +G ++ DG + T++L LSGD
Sbjct: 308 PPERGIRRGISAPRMYATSPEDPIPAHGQGGSGCVPRGVGDGGAGGGGQRPVFGTGLSVEKLKELTKLRLQQQXXXXXXXXXXXXXXXXXRGSPTFTGRPLATSALGSSXXXXXXXXXXXXXXLGHHHNERAEWRRSGSAXXXXXXXXXX----XXXXXXXXASFRRANSLIAPRGGAVHGGEQQGGAPMHGSRRPFGSTNGRMEG-PFGLEERMRVMQSETARGGXXXXGVSPRILSQPSSPCFSAASHSSSACGGSPXXXXXXXXXXXHGSGFSYAHDDGRGGGGG----------------------PPGFPMDGRGSLRMDSDGAMHTTLSLRLSGD 621 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig13.2180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig13.2180.1 >prot_F-serratus_M_contig13.2180.1 ID=prot_F-serratus_M_contig13.2180.1|Name=mRNA_F-serratus_M_contig13.2180.1|organism=Fucus serratus male|type=polypeptide|length=1100bp MDGPSGHLSREGSGGFTARHGRLGRALSSPETWLPQQSDNSSRYSNGFSSback to top mRNA from alignment at F-serratus_M_contig13:128517..161415- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig13.2180.1 ID=mRNA_F-serratus_M_contig13.2180.1|Name=mRNA_F-serratus_M_contig13.2180.1|organism=Fucus serratus male|type=mRNA|length=32899bp|location=Sequence derived from alignment at F-serratus_M_contig13:128517..161415- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig13:128517..161415- >mRNA_F-serratus_M_contig13.2180.1 ID=mRNA_F-serratus_M_contig13.2180.1|Name=mRNA_F-serratus_M_contig13.2180.1|organism=Fucus serratus male|type=CDS|length=6600bp|location=Sequence derived from alignment at F-serratus_M_contig13:128517..161415- (Fucus serratus male)back to top |