mRNA_F-serratus_M_contig13.2179.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig13.2179.1
Unique NamemRNA_F-serratus_M_contig13.2179.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig13.2179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig13contigF-serratus_M_contig13:26804..31721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size534
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig13.2179.1prot_F-serratus_M_contig13.2179.1Fucus serratus malepolypeptideF-serratus_M_contig13 26823..31662 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929239.7863936-UTR-F-serratus_M_contig13:26803..268221622929239.7863936-UTR-F-serratus_M_contig13:26803..26822Fucus serratus maleUTRF-serratus_M_contig13 26804..26822 +
1690962764.7694397-UTR-F-serratus_M_contig13:26803..268221690962764.7694397-UTR-F-serratus_M_contig13:26803..26822Fucus serratus maleUTRF-serratus_M_contig13 26804..26822 +
1622929239.8265946-UTR-F-serratus_M_contig13:31662..317211622929239.8265946-UTR-F-serratus_M_contig13:31662..31721Fucus serratus maleUTRF-serratus_M_contig13 31663..31721 +
1690962764.8086975-UTR-F-serratus_M_contig13:31662..317211690962764.8086975-UTR-F-serratus_M_contig13:31662..31721Fucus serratus maleUTRF-serratus_M_contig13 31663..31721 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929239.8008935-CDS-F-serratus_M_contig13:26822..271831622929239.8008935-CDS-F-serratus_M_contig13:26822..27183Fucus serratus maleCDSF-serratus_M_contig13 26823..27183 +
1690962764.7914524-CDS-F-serratus_M_contig13:26822..271831690962764.7914524-CDS-F-serratus_M_contig13:26822..27183Fucus serratus maleCDSF-serratus_M_contig13 26823..27183 +
1622929239.8134596-CDS-F-serratus_M_contig13:31567..316621622929239.8134596-CDS-F-serratus_M_contig13:31567..31662Fucus serratus maleCDSF-serratus_M_contig13 31568..31662 +
1690962764.8013728-CDS-F-serratus_M_contig13:31567..316621690962764.8013728-CDS-F-serratus_M_contig13:31567..31662Fucus serratus maleCDSF-serratus_M_contig13 31568..31662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig13.2179.1

>prot_F-serratus_M_contig13.2179.1 ID=prot_F-serratus_M_contig13.2179.1|Name=mRNA_F-serratus_M_contig13.2179.1|organism=Fucus serratus male|type=polypeptide|length=152bp
MTEVALVKSDNTPAETGSYLVQFRKEWNLEEGDMVVKQGKQYIPLTSHEY
SQIPNGALLGVSNGPMQATTLENAGLQESIRRTDVAAVTESSQPDGSETE
ESDRREEPPATLGAHLTGPQRELTRPRRRGTTTHRSKRFWEVQEKKFCFD
R*
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mRNA from alignment at F-serratus_M_contig13:26804..31721+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig13.2179.1 ID=mRNA_F-serratus_M_contig13.2179.1|Name=mRNA_F-serratus_M_contig13.2179.1|organism=Fucus serratus male|type=mRNA|length=4918bp|location=Sequence derived from alignment at F-serratus_M_contig13:26804..31721+ (Fucus serratus male)
TCTAATACCGTATCCGTATATGACTGAGGTAGCACTCGTAAAATCGGATA
ATACGCCCGCGGAGACAGGGTCGTATCTTGTCCAATTCCGGAAGGAATGG
AACCTAGAGGAAGGAGATATGGTTGTGAAGCAAGGAAAACAATACATTCC
TCTTACGTCACACGAATACAGCCAAATTCCTAACGGGGCATTGCTGGGGG
TGTCCAACGGACCGATGCAAGCAACAACGCTGGAAAACGCGGGACTGCAG
GAGAGCATAAGGAGGACGGATGTGGCAGCGGTCACGGAGAGCAGCCAACC
GGACGGGAGCGAGACCGAGGAGAGCGATCGGAGGGAGGAGCCACCGGCGA
CGCTCGGAGCGCACCTGACCGGCCCACAACGTGAGTCACTCCGGATAATA
TACCAGAAGCTCCCGAAACACATGCAGCAAATTAGACTCAAACTCGCAAG
TCCGGGGTGGAGCCCCTCAATTATCAAACGATTGGGTAAGGTCCTGATAG
AATACCAACATCGGTTTTCGAAAGGACAAGACGACTTGGGGCTATACAAA
AGTGATCCCTTCGAAATCAAACTCAAGGAGGAAGCGAAAACACCCATCGC
ATCTCGGAGTTACCGGTATAACCCAGTCGTGGCCAAGGAGGTCGAAACAA
TAATCGAGCAATACTTAAAAGCAGGCATAATAAGACGGTCTCAATCACCT
TATGCGGCGCCGATAGTCGTGGTCTTAAAGAAAACGGAAAAATTAGGATC
ACCTGTGATTACAGACGCTTAAACCAAGCCACGGTAATACCACAGGCACC
TATCCCCCGTATAGACGAGCTACTAGACACCCTAGGGTCAGCGAAGTGCT
TCAGCTCTTTTGACATGATGTCAGGATTCCACCAGATCATGATAGGAGAA
AACAGCGTGCCGCTGACAGCCTTCTGTACCACTTCGGGCCTATACGAGTT
TCTAGTCATGCCAATGGGGACCTCGGGTTCGCCGGGACATTTTCAAAGGG
TCATGCAAAACGTGACGGCAGACCTCGCACAGTTCGTTACACTGTACATA
GACGACGTGTTGATTCGAAGCAACGACGAGGCGAGCATGGTCGACCACAT
TGAAAAGTTTCTGAAGGCTCTTACCAAACACAACCTAAAAATCTCGCCGA
GCAAGACCGAAATTGGTGCACAAGAGATAAACTTTCTTGGGCATACGATA
TCACCTCGAGGTGTCACGCCGGATGAGAAAAAAGTCGACGCGCTACGTAA
ACTACCCATGCCGAACAACATCACGGAGTTAAGGTCTCTCCTTGGCGGGC
TGAGTTACTATCGAAAGTTCTTGCCAAACCTGTCGAGAAGGTTACAACCG
CTTACTAGACTACTGAAGAAAGACGTACAGTTCCATTTTACAAGAGAGAT
GGAAATGACGGTACGAGAAATACTCGGGGTACTGACTGAGTCTCCGGTGT
TAGTACACCCGGACTTCGAGGCAGCCCGTGATGGCACGCGAAGATTTCGC
CTATACTGCGACGCGAGCGCCGCAGGCTTCGGGGCTACGTTGGAACAACC
CCAGAAGGATAACTCAATAAGGCCAATAGTGTATCTGAGCCGTACCGTAC
TGCCTAACGAATTAGGTTGGGCCCCAATCGAAAAAGAAGCAGGATGTATC
GTCTGGGCCATCAAGCGACTGCGGCAGTACCTGTTCTTGATCCCATTCGA
CGTATATACGGATCACTCGCCCCTCACTAGCCTATTGCGCGTTGGGGACA
GCAACGCTCGAGTACAACGCTGGGTAGAGTTCCTAACGGCGTACAACTAC
AAAATAATTTACAGGAAGGGTGCCGCCCATGGTAATGCAGACATGCTGTC
GAGACTCTGTCAGCCAGCAACCGAAGCAGATACAAAGGGGTCGTGTACCA
TCACCAACGCAGAGGATCATGCGGTGTTCTTTGTAGGTGCGAGCGGGTTG
TGGCCGAGTAGCCCAGCAACGTCCGACGTAAGGATCGACACCAGTTTCGC
AAGACGGAGGTTAGGCGTGGGTGGGCTCCTCACAGCCCCAGATTATTCGT
ATGATAAGAGCAAAAATCACTACGTCTATCATGGGCACACAGACCTCGAG
GAACATACCCTACATGACCCTACGCCAACGTGGCATTCACTTTGCAAAAA
AGTGCTACAACAGAAGGAGTTAGCATTGTGTACGGTCCAACGGTACAGTA
ACTCCAGAACAGCAACAGTAGCGGCTGTAATTGCCAAGCAATCCAAACCA
AAGCAAGGTCCGCTACCCGTACGACGATCGCCGCGCAAGCGACGACCGTC
CAGAGTCATGATCGAAGTGATGGAATCATCCGCGACAAAGGAGCCATTAG
AGTCGATCGACGAGGCGAGTATTACGTCACAAGAAAATAGTACGCACAAA
ATCGACGTCGGTACAGAACAGGTAATATCATCGAAAGAAAGCAGTGGAGA
TGATACTCCGGAATCTCGCATTGATCACCAGCTAGCGCCCCCGGATAGGG
ACGAACCTTTCATGGAGGACATCGACGTTGGGGAAGATAGAATACCCGAA
CCGGCGTCTAGCAGAACGCGACAAGCCAACCCAGATCTGTCTAGGGACGC
TCGACTTGATGTCGATCTAGGGTCGATGACTGCACAAAGGTGGAGTCAGG
AACAACTACAGGAACCGGTCTGTAAGAGTGTGATCACTCTTTTGCAGCAA
GGTCGGAGTGGTTCAGCACCACATAACATCGTGCTTCAATTTCCAGCACG
GACGCGGCCTACAGTACAACAAGTGTTAGAGCTTGCGGCCAAGTGTAGGC
TGTTCACTACAGAAGAAGGGAACTTACCGTTACTAGTAAAGCGTAATAAC
AGCAGAAAGCCACCGCATGCAGGAGGCAGGGTTCCTCAAATCTATGTCCC
GATGCTCATGCGACCTTGGGTTCTCAAAGGATGTCATGCGGATTCAGTCT
GCCATTTTGGAGTCACTCGTACTCTACAAATGGTACAACGCTTTTACTGG
TGGATCGGGTTGGATCAGAGCGTGAGGTGGTGGATCAGGAGATGCCTTTT
CTGCCAAGCGCGAAAAACATCACGGCAGACGATCCGATGGCCAACCACGC
TGATGCCCCTTCCTAGTGGGCCGGGCCAAATTATCAGCGTCGATTACTTT
GGCCCGCTACCGATTACAAAACTGGGTAACAAACACATACTGCTGTACAC
GGATAGGTTCAGCAGACATATTGCCGCGTACGCCGTTACCCAAGACGAAC
GCACAGCGGAGGGAACTGCTCGGATTTTCGTCGAGCAGTACATTCCCCTT
TGGGGATGCCCCCATACCCTCTTGTCCGACAACGGGACAGAGTTTGTAGC
GCGCCTATCACTTGCGATATACAAGTTGATGAAGGTACGCAAAATAGCGA
CAACAGCCTTCCACCCGAAAAGCAACGGCGGAGTAGAACGAGTTAACCAC
TCGTTAGCACAGATGTTATCACTGGTTATTAGTGAGCAACAGGATGACTG
GGATGAATGGTTGCCCTACGTAGTACAAGCATACAACAATTCAGTCAGTG
CAGCCACAGGGCTAGCGCCGAATGAGATCCATCTAGGGCGCATGCCACGA
CTGCCAATGACTGTAATCGACGAGTGTGTCGTCAAGGGACACACGGGCGA
GAAACAGGACCAACTGCTGTACCTTGACATTGTCCGGGAAAGACAACAAC
GCGCCTTCGAACTAGTACGGGAGAGCCACCTGATAACCATGTCAAAAATA
CAGCGTTCCAACACTAAGCTGCTCGCGATACTACACAAGTTGCCGAATTT
TGAAGTTGGCAACTGGGTATGGACATACAATCCACAAGCCACAATTGGTC
AGGGGGGAGGCGAAGGTAGTTCGCATATGGTGACAAAGCTGTCACTAAAC
TGGACCGGTCCCTACAAGATTCTAGTAGTGGGACCAGGCCGAGGACCCGA
TGGTCGACCGGTCGCAGACAAGACTCTATATCTAGATCTTCCCACCGATA
TGCCGGGAAAGGATCAAAAGAAACGGGTATCTGTAGACCGCTGCAAAATG
TGCCATAACCCCAGTGATGATTTGGACATGCCTAAGTACTTACCAGCAGG
GCTGAGTAAATATGTACTTCATTCTTTCACAGACAAATCCCCACCATTTC
ATCCCACAACGGAGGATGTGGTGAAATCGGGCATACCAGTGGACGTTGAG
AAAATCACTGGACATCAACTAGTTCGGGGTCGGGGCGGCAAGCTAGCCGT
TATGTATGAGACTCACTGGGAGGGTCTCTCTTCGATCACGTGGGAACGAG
AAATCGATTTGAGGCACTTTTCCCAATACATCCTCGAATACTGGATGTCA
ACTCCAAGACAACTGAAGGGGGTAAACTCCAAGTATCGGGCCATGCGCAG
GGCACAGGCACACAGAGCCTACTGGCGTAATCAGAACAAGTACTACCTAG
AACAAGGATACCATCTAGTGTCATACAGTACGTGGGAAAAGAAATTCAGA
GGGCGGAGAGTACCGCTTCAGGCCTTCTTTTGGTGGAAAAACCACCAAGG
CTGGTGGTTGGGACAGGTGAAGGCCTGGGACAGAGACATCTATGATCAAT
ACTTCGTGCGATTCCACGATGATCCAGGGCCGGCACAGGTAATGTTGGCG
GAAGAGTTCTACACAACAGATGTTGACGGTGTACCAGGATCCTGGTGCCT
ACAGTCGCATATACGGGAAGGTATTTTCCGCGATACCGACATGTCGCGTG
ATGCCGATTTCCAGGAGAGCTGACGAGACCAAGACGAAGAGGGACAACAA
CGCACCGGAGCAAACGCTTCTGGGAGGTCCAGGAAAAAAAATTTTGTTTT
GACAGGTAGACTTCGAGCCTCGAGCGCAAGATCAAGAACATCCTCTCCCA
GTTCAGCGTAGAAGACGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig13:26804..31721+

>mRNA_F-serratus_M_contig13.2179.1 ID=mRNA_F-serratus_M_contig13.2179.1|Name=mRNA_F-serratus_M_contig13.2179.1|organism=Fucus serratus male|type=CDS|length=912bp|location=Sequence derived from alignment at F-serratus_M_contig13:26804..31721+ (Fucus serratus male)
ATGACTGAGGTAGCACTCGTAAAATCGGATAATACGCCCGCGGAGACAGG
GTCGTATCTTGTCCAATTCCGGAAGGAATGGAACCTAGAGGAAGGAGATA
TGGTTGTGAAGCAAGGAAAACAATACATTCCTCTTACGTCACACGAATAC
AGCCAAATTCCTAACGGGGCATTGCTGGGGGTGTCCAACGGACCGATGCA
AGCAACAACGCTGGAAAACGCGGGACTGCAGGAGAGCATAAGGAGGACGG
ATGTGGCAGCGGTCACGGAGAGCAGCCAACCGGACGGGAGCGAGACCGAG
GAGAGCGATCGGAGGGAGGAGCCACCGGCGACGCTCGGAGCGCACCTGAC
CGGCCCACAACATGACTGAGGTAGCACTCGTAAAATCGGATAATACGCCC
GCGGAGACAGGGTCGTATCTTGTCCAATTCCGGAAGGAATGGAACCTAGA
GGAAGGAGATATGGTTGTGAAGCAAGGAAAACAATACATTCCTCTTACGT
CACACGAATACAGCCAAATTCCTAACGGGGCATTGCTGGGGGTGTCCAAC
GGACCGATGCAAGCAACAACGCTGGAAAACGCGGGACTGCAGGAGAGCAT
AAGGAGGACGGATGTGGCAGCGGTCACGGAGAGCAGCCAACCGGACGGGA
GCGAGACCGAGGAGAGCGATCGGAGGGAGGAGCCACCGGCGACGCTCGGA
GCGCACCTGACCGGCCCACAACGAGAGCTGACGAGACCAAGACGAAGAGG
GACAACAACGCACCGGAGCAAACGCTTCTGGGAGGTCCAGGAAAAAAAAT
TTTGTTTTGACAGGTAGGAGAGCTGACGAGACCAAGACGAAGAGGGACAA
CAACGCACCGGAGCAAACGCTTCTGGGAGGTCCAGGAAAAAAAATTTTGT
TTTGACAGGTAG
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