mRNA_F-serratus_M_contig1295.2173.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1295.2173.1
Unique NamemRNA_F-serratus_M_contig1295.2173.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1295.2173.1 vs. uniprot
Match: E2LZP6_MONPE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LZP6_MONPE)

HSP 1 Score: 135 bits (340), Expect = 1.260e-31
Identity = 97/331 (29.31%), Postives = 147/331 (44.41%), Query Frame = 1
Query:    1 TLHEVKVSPERSQWRGALKPEMDGQIARGVRKAIDRLKGKIVLGTKIVIKRKVGQDG-------RFLAQDFRQIKGIHYQESSLPTPTQSSIRMALAVMLLLDWEGRQLDVEITFLEADVEL------PDGYRDSPS------------------------------------------DDLLRPSETKQDEHRVLEDLRSSFLVKDLGEIVYYLGCHITRDRKARTVMFDQRRYAQTVTDRFKIRKTRVVPVSGGRAP---LSKADGPQNDAEITEMRGIPYREAVGALMWVANMTRPDLAYTAHMLAKSGDNLGPGHWKAVVKALQYLK 819
            T  +   SP   QW+ A+  EM   ++ G    ++   G+  +G+K V + K   DG       R +A+ F Q  G  Y E+   T  Q+++R  LA+  + D   R +D+   F+ +D++       P+G+R                                              DD+   S+++      +  L   F ++DLG   Y LG  ITR+R  R +   QR+Y     + F +  T   P +    P   LSK+  PQ   E+ EM  IPY  AVG+L+++A MTRPD+AYTA +LA+   N G  HWKAV   L+YLK
Sbjct:  106 TYRQAITSPNAEQWQEAMIEEMTAHLSNGTWNLVELPPGQKAIGSKWVYRIKHKADGSIERFKARLVAKGFSQRLGFDYSETFASTMRQNTLRTVLALAAVEDLHLRSIDISHAFINSDIDTEIYMTQPEGFRQGGPRIVCRLDKSLYGLKQAPRLWDEKLGIYIYQNDNVKVIVPVFVDDITLASKSEDMLDEFVAKLSKHFKLRDLGATSYLLGVEITRNRPERKLYLSQRQYIINKLEEFGM--TDCKPATTPMTPNLILSKSQSPQTPDEVEEMSEIPYISAVGSLLYLATMTRPDIAYTASVLARFNSNPGMDHWKAVKHVLRYLK 434          
BLAST of mRNA_F-serratus_M_contig1295.2173.1 vs. uniprot
Match: A0A2P4XRY4_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRY4_9STRA)

HSP 1 Score: 120 bits (301), Expect = 3.560e-26
Identity = 96/307 (31.27%), Postives = 138/307 (44.95%), Query Frame = 1
Query:    1 TLHEVKVSPERSQWRGALKPEMDGQIARGVRKAIDRLKGKIVLGTK--IVIKRKVGQD-----GRFLAQDFRQIKGIHYQESSLPTPTQSSIRMALAVMLLLDWEGRQLDVEITFLEADVE------LPDGYRDSPS--------------------DDLLRPSETKQDEHRVLEDLRSSFLVKDLGEIVYYLGCHITRDRKARTVMFDQRRYAQTVTDRFKIRKTR-VVPVSGGRAPLSKADGPQNDAEITEMRGIPYREAVGALMWVANMTRPDLAYTAHMLAKSGDNLGPGHWKAVVKALQYLK 819
            T  EV  S    +W  A+  EM           +D    K  +G K    IKR           R +A+ F Q  GI Y E+  P   + SI    A+    D E   +DV+  FL  DVE       PDG+ D P+                    DDL+  S TK D   + E LRS F +K+LG++ Y LG  I R R+   VM +QR Y + + ++  + K + +   +   A L K+   +++  + +    PYRE VGALM++A  TRPD+AY    +AK  +     HW A  + L+YLK
Sbjct:  500 TYDEVMKSKYNGEWLHAMGSEMKSLEDHQTWTLVDMPSDKKAIGCKWGFRIKRDPNDSIVKFKARLVAKGFTQRPGIDYTETFAPVARKESINAVAAIAAEEDMEAENVDVDTAFLYGDVEEELYMDQPDGFADQPTRIRSACWDKNSTYSIVIVYVDDLMIFSRTKDDIAEIKEALRSEFSIKELGDLKYCLGIEIHRKREKMIVM-NQRAYIKRLAEKSGVDKCKDIYTPADSSAKLMKSS--EDEYFVAKY---PYRELVGALMYLATSTRPDIAYAVGEVAKFCERYNKSHWVAAKRILKYLK 800          
BLAST of mRNA_F-serratus_M_contig1295.2173.1 vs. uniprot
Match: A5B4D6_VITVI (Integrase catalytic domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5B4D6_VITVI)

HSP 1 Score: 119 bits (298), Expect = 8.760e-26
Identity = 79/236 (33.47%), Postives = 117/236 (49.58%), Query Frame = 1
Query:  172 RFLAQDFRQIKGIHYQESSLPTPTQSSIRMALAVMLLLDWEGRQLDVEITFLEADVELPDGYRDSPS-------------------DDLLRPSETKQDEHRVLEDLRSSFLVKDLGEIVYYLGCHITRDRKARTVMFDQRRYAQTVTDRFKIR--KTRVVPVSGGRAPLSKADGPQNDAEITEMRGIPYREAVGALMWVANMTRPDLAYTAHMLAKSGDNLGPGHWKAVVKALQYL 816
            R + + + Q +GI ++E+  P  T+ S R+ +A++   D E  Q+DV+ TFL  D++  D Y + P+                   D ++ P+  K++       +     ++DLGE  Y LG  I RDR    +   QR Y + +  RF +   K+   P+  G    SKA  PQND EI EMR IPY   VG+LM+    TR D+A+   ML +   N G  HWKA  K L+YL
Sbjct:  563 RLVVKGYSQREGIDFKENFSPVXTKDSFRVIMAIVAHFDLELHQMDVKTTFLNGDLDK-DVYMEQPTSFTEVGKEHLALRXWYLKFDRIITPNGFKEN------TVDRCIYLRDLGEASYVLGIKILRDRANGVLKLSQRTYIEKILKRFNMHNCKSSKTPIMKGDK--SKAQCPQNDDEIEEMRTIPYSSVVGSLMYAQVCTRLDIAFVVGMLRRYLSNPGSQHWKAXKKVLRYL 789          
BLAST of mRNA_F-serratus_M_contig1295.2173.1 vs. uniprot
Match: A0A8H7C626_AGABI (Uncharacterized protein n=1 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=A0A8H7C626_AGABI)

HSP 1 Score: 117 bits (292), Expect = 3.000e-25
Identity = 83/297 (27.95%), Postives = 133/297 (44.78%), Query Frame = 1
Query:   40 WRGALKPEMDGQIARGVRKAIDRLKGKIVLGTKIVIKRKVGQDGRFL-------AQDFRQIKGIHYQESSLPTPTQSSIRMALAVMLLLDWEGRQLDVEITFLEADVELPDGYRDSP----------------------------SDDLLRPSETKQDEHRVLEDLRSSFLVKDLGEIVYYLGCHITRDRKARTVMFDQRRYAQTVTDRFKIR--KTRVVPVSGGRAPLSKADGPQNDAEITEMRGIPYREAVGALMWVANMTRPDLAYTAHMLAKSGDNLGPGHWKAVVKALQYLK 819
            W   ++ E++    + V + + R +GK V+ ++ V   K    G  +       A+ F Q+ G  Y +         S+R+   V   L+ E           E  +E P G+ +                              +DD+L  S T+  + R  ++L  S+ +KDLG   + LG  + RD K  TV   Q  Y + + DRF +   K R  P+  G   LS  D P++  E+ +M+ IPYREA+G+LMW+   TRPDL+Y  ++L++   N G  HW A+   + YLK
Sbjct:  106 WLEPMRRELEMMRGKDVYRLVPRPEGKNVVQSRWVFANKYDDTGAIVSRKACLVAKGFTQVIGEDYDKMYALVARLESVRLVNFVSAFLNSEN--------VFEVFMEQPPGFEEGGVTSYYTSRADPQIRSRVVGDELTLTSTWTDDILGVSSTQAGKVRAKQELEKSYELKDLGTASFILGMKMERDEKTGTVTLSQCAYCERILDRFHMADAKPRSTPLPAGLT-LSTDDAPKSLEEMKDMKNIPYREALGSLMWLQVATRPDLSYAVNLLSRFASNPGRAHWNAIKHTIAYLK 393          
BLAST of mRNA_F-serratus_M_contig1295.2173.1 vs. uniprot
Match: A0A8H7F4A3_AGABI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=A0A8H7F4A3_AGABI)

HSP 1 Score: 112 bits (281), Expect = 1.290e-23
Identity = 61/152 (40.13%), Postives = 88/152 (57.89%), Query Frame = 1
Query:  370 SDDLLRPSETKQDEHRVLEDLRSSFLVKDLGEIVYYLGCHITRDRKARTVMFDQRRYAQTVTDRFKIR--KTRVVPVSGGRAPLSKADGPQNDAEITEMRGIPYREAVGALMWVANMTRPDLAYTAHMLAKSGDNLGPGHWKAVVKALQYLK 819
            +DD+L  S T+  E    E+LRSS  +KDLG+  Y LG  I  D     +   QR Y++ +  +F +   K R  P+  G   LS  D PQ+  E +EMR +PYREA+G+LMW+   TRPDL++  ++L++  +N G  HW A+   L YLK
Sbjct:  435 TDDILGASSTEIGESTAKEELRSSHELKDLGQAKYILGRRIETDDTTGCIKLSQRAYSERIIKKFNMSDAKPRSTPLPAGIV-LSVDDSPQSAEESSEMRNVPYREALGSLMWLQVATRPDLSFAVNLLSRFANNPGQAHWSALKHTLAYLK 585          
BLAST of mRNA_F-serratus_M_contig1295.2173.1 vs. uniprot
Match: A0A401GAR7_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GAR7_9APHY)

HSP 1 Score: 111 bits (278), Expect = 3.840e-23
Identity = 101/334 (30.24%), Postives = 145/334 (43.41%), Query Frame = 1
Query:    4 LHEVKVSP----ERSQ----WRGALKPEMDGQIARGVRKAIDRLKGKIVLGTKIVIKRKVGQDG------RFLAQDFRQIKGIHYQESSLPTPTQSSIRMALAVMLLLDWEGRQLDVEITFLEA---------------DVELPD----------GYRDSPSD--------------------DLLRPSETKQDEHRVLEDLRSSFLVKDLGEIVYYLGCHITRDRKARTVMFDQRRYAQTVTDRFKIRKTRVVPVSGGRAP---LSKADGPQNDAEITEMRGIPYREAVGALMWVANMTRPDLAYTAHMLAKSGDNLGPGHWKAVVKALQYLK 819
            +HE  V+P    E  Q    W+ A++ E+DG    G  + + R  G  V+G K V  RK  + G      R +A+ F+QI GI Y E+        S+ M  A+    D E  Q DVE  +L A               D E PD          G+  S +D                    D+   ++T     R+  ++ + + +   G+  Y LG  I RDR  RT+   Q  YA+ V  RF I+     PV     P   L  A  P    E  EM  +PYREA+G +M++A  TRPDL+Y   +L++   N G  HWKA+   L+Y+K
Sbjct:  752 VHEGGVTPSTYKEAGQHADIWQPAMQTEIDGLHKIGAWQLLPRTAGMNVVGCKWVYARKFDETGKWKAKARLIAKGFQQILGIDYFETHASVIHFESLWMICAIATFNDMEMGQDDVEKAYLNATPQEMIYMEQPPGFVDAEFPDHVCLMQRSLYGFMQSGNDWCVRARQDDNGVMVTATYTDDISSCTDTVDGLGRIRGEIGTRYHLSGGGDFKYMLGVIIKRDRDVRTMRISQHPYAERVLKRFSIQYAN--PVHTPLEPSIKLGLATEPITSDEALEMATVPYREALGTIMYLAVTTRPDLSYPVQVLSRYMANPGIIHWKALKCVLRYIK 1083          
BLAST of mRNA_F-serratus_M_contig1295.2173.1 vs. uniprot
Match: A0A4S4K4A0_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4K4A0_9AGAM)

HSP 1 Score: 104 bits (259), Expect = 6.050e-23
Identity = 55/136 (40.44%), Postives = 79/136 (58.09%), Query Frame = 1
Query:  418 VLEDLRSSFLVKDLGEIVYYLGCHITRDRKARTVMFDQRRYAQTVTDRFKIRKTRVV--PVSGGRAPLSKADGPQNDAEITEMRGIPYREAVGALMWVANMTRPDLAYTAHMLAKSGDNLGPGHWKAVVKALQYLK 819
            V E+L   F + DLG   + LG  + RDR  R +   QR+Y   + +RF++     V  P+  G   LSKA  P++  EI  M+ +PYR+ VGALM++A  TRPD++Y   +LA+   N GPGHWKA     +YL+
Sbjct:   14 VKEELEKHFKLHDLGPTSFLLGVRVERDRSKRLLSLSQRQYITDILERFEMSNCTTVTTPLPDGHR-LSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAKHLCRYLQ 148          
BLAST of mRNA_F-serratus_M_contig1295.2173.1 vs. uniprot
Match: A0A146H2N5_MYCCL (Integrase catalytic domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H2N5_MYCCL)

HSP 1 Score: 109 bits (273), Expect = 1.760e-22
Identity = 75/281 (26.69%), Postives = 118/281 (41.99%), Query Frame = 1
Query:  169 GRFLAQDFRQIKGIHYQESSLPTPTQSSIRMALAVMLLLDWEGRQLDVEITFLEADVEL------PDGYRDSPS----------------------------------------------------------DDLLRPSETKQDEHRVLEDLRSSFLVKDLGEIVYYLGCHITRDRKARTVMFDQRRYAQTVTDRFKIRKTRVVPVSGGRAPLSKADGPQNDAEITEMRGIPYREAVGALMWVANMTRPDLAYTAHMLAKSGDNLGPGHWKAVVKALQYLK 819
            GR +A    Q  G+ + ++  PTP  S++R  LA+  L D E   +D+   FL  ++        P+G+ +  S                                                          DD+   S+ +    ++  DL+S+F ++DLG   + LG  + RDR  RT+   QR+Y   + +RF +     V        L+   GP ++ +   MR  PY  A GAL ++AN+TRPD+AY   +L +   N GP HWKAV   ++YLK
Sbjct:  973 GRVVAMGNHQRPGLDFDDTFAPTPKWSALRAILAIAALEDLELESVDISSAFLNGEINSKVYMRQPEGFVERDSSWVWKLIKSIYGLKQASRIWHKKLDETLRGLGFQRVSCEHSVWVWKRGEDRVIVPVFVDDITIASKNQPAVAKLKNDLKSAFKLRDLGPTSFLLGVEVIRDRPNRTLSLSQRQYTLDILERFGLADCNPVTTPLDADKLAALAGPLSEEDANYMRDKPYVNATGALSYLANVTRPDIAYAVGVLCRFNANPGPRHWKAVKHLMKYLK 1253          
BLAST of mRNA_F-serratus_M_contig1295.2173.1 vs. uniprot
Match: UPI00158CDE06 (uncharacterized protein LOC118071078 n=1 Tax=Chelonus insularis TaxID=460826 RepID=UPI00158CDE06)

HSP 1 Score: 108 bits (270), Expect = 4.510e-22
Identity = 93/327 (28.44%), Postives = 147/327 (44.95%), Query Frame = 1
Query:    1 TLHEVKVSPERSQWRGALKPEMDGQIARGVRKAIDRLK----GKI--VLGTKIVIKRKVGQDG------RFLAQDFRQIKGIHYQESSLPTPTQSSIRMALAVMLLLDWEGRQLDVEITFLEADV------ELPDGYRDSPSDDLLRPSETKQ-------------------------DEHR---VLEDLRSSFLVKDLGEIVYYLGCHITRDRKARTVMFDQRRYAQTVTDRFKI-----RKTRVVPVSGG---RAPLSKADGPQNDAEITEMRGIPYREAVGALMWVANMTRPDLAYTAHMLAKSGDNLGPGHWKAVVKALQYLK 819
            T  +   S E   W+ A+  E+       V + IDR K    GK   ++ ++ V KRKV  DG      R + + F+       +E+  P      +R  LA++   D E  QLDV+  FL   +      E+PDG   S +D   +  + K+                         DE++   V E L+S F + DLG    +LG  ITRDRK + ++ +Q+RY + +  RF       +KT ++        R    +++ P+          IPYREAVG+L+++A  TRPD+AY  ++L++   N     WK V +  +YLK
Sbjct: 1269 TYRQAMSSSESIYWKEAVDNELKLMSENNVWEIIDRPKLTSDGKRANIIDSRWVFKRKVKDDGEIRHKARLVIRGFKDRNVYELKETYAPVSRLPLVRAVLAIINKYDLEVCQLDVQTAFLNGTIDEEIFMEIPDGIEISDTDRREKVCKLKRALYGLKISPKRWNKRFTEVALVASNDENKLKEVKERLKSEFKMTDLGVPKEFLGIGITRDRKNKILVLNQKRYIEKILKRFNFSESHPQKTPMITTQAANRERKLREESEDPELLRVTKTNENIPYREAVGSLLYLAGATRPDIAYAVNVLSRHQINPVDNDWKMVKRVFRYLK 1595          
BLAST of mRNA_F-serratus_M_contig1295.2173.1 vs. uniprot
Match: A0A4S4LBP1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4LBP1_9AGAM)

HSP 1 Score: 105 bits (261), Expect = 7.020e-22
Identity = 57/151 (37.75%), Postives = 86/151 (56.95%), Query Frame = 1
Query:  373 DDLLRPSETKQDEHRVLEDLRSSFLVKDLGEIVYYLGCHITRDRKARTVMFDQRRYAQTVTDRFKIRKTRVV--PVSGGRAPLSKADGPQNDAEITEMRGIPYREAVGALMWVANMTRPDLAYTAHMLAKSGDNLGPGHWKAVVKALQYLK 819
            DD+   +++K  +  V E+L   F + DLG   + LG  + RDR  R +   QR+Y   + +RF++     V  P+  G   LSKA  P++  EI  M+ +PYR+ VGALM++A  TRPD++Y   +LA+   N GP HWKA     +YL+
Sbjct:  139 DDMTIAAKSKDQDLFVKEELEKHFKLHDLGPTSFLLGVRVERDRSKRLLSLSQRQYIIDILERFEMSNCTTVTTPLPDGHR-LSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPSHWKAAKHLCRYLQ 288          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1295.2173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E2LZP6_MONPE1.260e-3129.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P4XRY4_9STRA3.560e-2631.27Integrase catalytic core protein n=1 Tax=Phytophth... [more]
A5B4D6_VITVI8.760e-2633.47Integrase catalytic domain-containing protein n=1 ... [more]
A0A8H7C626_AGABI3.000e-2527.95Uncharacterized protein n=1 Tax=Agaricus bisporus ... [more]
A0A8H7F4A3_AGABI1.290e-2340.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GAR7_9APHY3.840e-2330.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A4S4K4A0_9AGAM6.050e-2340.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A146H2N5_MYCCL1.760e-2226.69Integrase catalytic domain-containing protein n=1 ... [more]
UPI00158CDE064.510e-2228.44uncharacterized protein LOC118071078 n=1 Tax=Chelo... [more]
A0A4S4LBP1_9AGAM7.020e-2237.75Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1295contigF-serratus_M_contig1295:98653..99742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue4e-24
Seed eggNOG ortholog164328.Phyra85763
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size1072
Cds size951
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1295.2173.1prot_F-serratus_M_contig1295.2173.1Fucus serratus malepolypeptideF-serratus_M_contig1295 98716..99684 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929238.9028683-UTR-F-serratus_M_contig1295:98652..987151622929238.9028683-UTR-F-serratus_M_contig1295:98652..98715Fucus serratus maleUTRF-serratus_M_contig1295 98653..98715 +
1690962764.3540294-UTR-F-serratus_M_contig1295:98652..987151690962764.3540294-UTR-F-serratus_M_contig1295:98652..98715Fucus serratus maleUTRF-serratus_M_contig1295 98653..98715 +
1622929238.9520638-UTR-F-serratus_M_contig1295:99684..997421622929238.9520638-UTR-F-serratus_M_contig1295:99684..99742Fucus serratus maleUTRF-serratus_M_contig1295 99685..99742 +
1690962764.3788297-UTR-F-serratus_M_contig1295:99684..997421690962764.3788297-UTR-F-serratus_M_contig1295:99684..99742Fucus serratus maleUTRF-serratus_M_contig1295 99685..99742 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929238.9186306-CDS-F-serratus_M_contig1295:98715..989881622929238.9186306-CDS-F-serratus_M_contig1295:98715..98988Fucus serratus maleCDSF-serratus_M_contig1295 98716..98988 +
1690962764.3638256-CDS-F-serratus_M_contig1295:98715..989881690962764.3638256-CDS-F-serratus_M_contig1295:98715..98988Fucus serratus maleCDSF-serratus_M_contig1295 98716..98988 +
1622929238.9351628-CDS-F-serratus_M_contig1295:99006..996841622929238.9351628-CDS-F-serratus_M_contig1295:99006..99684Fucus serratus maleCDSF-serratus_M_contig1295 99007..99684 +
1690962764.3714905-CDS-F-serratus_M_contig1295:99006..996841690962764.3714905-CDS-F-serratus_M_contig1295:99006..99684Fucus serratus maleCDSF-serratus_M_contig1295 99007..99684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1295.2173.1

>prot_F-serratus_M_contig1295.2173.1 ID=prot_F-serratus_M_contig1295.2173.1|Name=mRNA_F-serratus_M_contig1295.2173.1|organism=Fucus serratus male|type=polypeptide|length=317bp
MDGQIARGVRKAIDRLKGKIVLGTKIVIKRKVGQDGRFLAQDFRQIKGIH
YQESSLPTPTQSSIRMALAVMLLLDWEGRQLDVEITFLEADVELPDGYRD
SPSDDLLRPSETKQDEHRVLEDLRSSFLVKDLGEIVYYLGCHITRDRKAR
TVMFDQRRYAQTVTDRFKIRKTRVVPVSGGRAPLSKADGPQNDAEITEMR
GIPYREAVGALMWVANMTRPDLAYTAHMLAKSGDNLGPGHWKAVVKALQY
LKRDGEPRGHIWRRDGGRHKAIGVGGRRSRNLSRYAPLGIGGHGDARWRG
NQLVFAGAESNRDSDV*
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mRNA from alignment at F-serratus_M_contig1295:98653..99742+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1295.2173.1 ID=mRNA_F-serratus_M_contig1295.2173.1|Name=mRNA_F-serratus_M_contig1295.2173.1|organism=Fucus serratus male|type=mRNA|length=1090bp|location=Sequence derived from alignment at F-serratus_M_contig1295:98653..99742+ (Fucus serratus male)
ACCCTGCACGAAGTTAAGGTGTCCCCCGAGCGGTCGCAATGGCGCGGCGC GCTCAAGCCTGAGATGGACGGCCAGATTGCGCGTGGTGTGCGGAAAGCCA TCGATCGGCTCAAAGGAAAAATCGTACTCGGCACCAAGATCGTTATTAAA CGGAAGGTCGGTCAGGATGGCCGCTTCTTGGCCCAGGATTTCCGCCAGAT CAAGGGGATTCACTACCAAGAGTCATCGCTGCCGACACCTACGCAGTCGA GCATCCGAATGGCGCTGGCGGTGATGCTCTTATTGGACTGGGAGGGGCGA CAGCTCGACGTAGAAATAACGTTTCTCGAGGCGGATGTAGCGGAGGAATC CTAGGTTGAGCTCCCCGACGGGTATCGCGACTCGCCGAGTGACGATCTAC TAAGGCCGAGCGAAACGAAGCAGGACGAGCATCGGGTTCTGGAAGACCTT CGATCCAGCTTCCTCGTCAAGGATCTAGGGGAGATCGTGTACTACCTGGG ATGTCACATTACTCGGGACCGTAAGGCGAGGACGGTGATGTTCGATCAGC GACGTTACGCGCAGACGGTAACCGACCGATTCAAAATTCGTAAAACCAGA GTGGTCCCTGTCTCTGGGGGGAGAGCGCCACTTTCGAAGGCAGACGGGCC GCAGAACGACGCTGAGATCACAGAGATGCGCGGCATCCCGTACCGCGAGG CAGTAGGGGCCCTAATGTGGGTAGCCAACATGACTCGGCCTGACCTCGCT TACACCGCGCACATGCTCGCCAAGTCCGGTGACAACCTCGGGCCCGGGCA CTGGAAGGCGGTAGTGAAAGCGCTGCAGTACCTGAAACGGGACGGTGAGC CTAGGGGTCACATATGGAGGCGCGACGGAGGACGCCATAAAGCTATCGGC GTGGGTGGACGCCGATCACGCAACCTGTCCAGATACGCGCCGCTCGGTAT CGGGGGGCACGGCGATGCTCGGTGGAGGGGCAATCAGCTGGTTTTCGCGG GCGCAGAGAGTAACCGCGACAGCGACGTCTGAATCGGAGTACGTAGCACT GGCGGAGATAGTGAATGAGTTACGTTTCTTTCGGCAGGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1295:98653..99742+

>mRNA_F-serratus_M_contig1295.2173.1 ID=mRNA_F-serratus_M_contig1295.2173.1|Name=mRNA_F-serratus_M_contig1295.2173.1|organism=Fucus serratus male|type=CDS|length=1902bp|location=Sequence derived from alignment at F-serratus_M_contig1295:98653..99742+ (Fucus serratus male)
ATGGACGGCCAGATTGCGCGTGGTGTGCGGAAAGCCATCGATCGGCTCAA
AGGAAAAATCGTACTCGGCACCAAGATCGTTATTAAACGGAAGGTCGGTC
AGGATGGCCGCTTCTTGGCCCAGGATTTCCGCCAGATCAAGGGGATTCAC
TACCAAGAGTCATCGCTGCCGACACCTACGCAGTCGAGCATCCGAATGGC
GCTGGCGGTGATGCTCTTATTGGACTGGGAGGGGCGACAGCTCGACGTAG
AAATAACGTTTCTCGAGGCGGATATGGACGGCCAGATTGCGCGTGGTGTG
CGGAAAGCCATCGATCGGCTCAAAGGAAAAATCGTACTCGGCACCAAGAT
CGTTATTAAACGGAAGGTCGGTCAGGATGGCCGCTTCTTGGCCCAGGATT
TCCGCCAGATCAAGGGGATTCACTACCAAGAGTCATCGCTGCCGACACCT
ACGCAGTCGAGCATCCGAATGGCGCTGGCGGTGATGCTCTTATTGGACTG
GGAGGGGCGACAGCTCGACGTAGAAATAACGTTTCTCGAGGCGGATGTTG
AGCTCCCCGACGGGTATCGCGACTCGCCGAGTGACGATCTACTAAGGCCG
AGCGAAACGAAGCAGGACGAGCATCGGGTTCTGGAAGACCTTCGATCCAG
CTTCCTCGTCAAGGATCTAGGGGAGATCGTGTACTACCTGGGATGTCACA
TTACTCGGGACCGTAAGGCGAGGACGGTGATGTTCGATCAGCGACGTTAC
GCGCAGACGGTAACCGACCGATTCAAAATTCGTAAAACCAGAGTGGTCCC
TGTCTCTGGGGGGAGAGCGCCACTTTCGAAGGCAGACGGGCCGCAGAACG
ACGCTGAGATCACAGAGATGCGCGGCATCCCGTACCGCGAGGCAGTAGGG
GCCCTAATGTGGGTAGCCAACATGACTCGGCCTGACCTCGCTTACACCGC
GCACATGCTCGCCAAGTCCGGTGACAACCTCGGGCCCGGGCACTGGAAGG
CGGTAGTGAAAGCGCTGCAGTACCTGAAACGGGACGGTGAGCCTAGGGGT
CACATATGGAGGCGCGACGGAGGACGCCATAAAGCTATCGGCGTGGGTGG
ACGCCGATCACGCAACCTGTCCAGATACGCGCCGCTCGGTATCGGGGGGC
ACGGCGATGCTCGGTGGAGGGGCAATCAGCTGGTTTTCGCGGGCGCAGAG
AGTAACCGCGACAGCGACGTCTGAGTTGAGCTCCCCGACGGGTATCGCGA
CTCGCCGAGTGACGATCTACTAAGGCCGAGCGAAACGAAGCAGGACGAGC
ATCGGGTTCTGGAAGACCTTCGATCCAGCTTCCTCGTCAAGGATCTAGGG
GAGATCGTGTACTACCTGGGATGTCACATTACTCGGGACCGTAAGGCGAG
GACGGTGATGTTCGATCAGCGACGTTACGCGCAGACGGTAACCGACCGAT
TCAAAATTCGTAAAACCAGAGTGGTCCCTGTCTCTGGGGGGAGAGCGCCA
CTTTCGAAGGCAGACGGGCCGCAGAACGACGCTGAGATCACAGAGATGCG
CGGCATCCCGTACCGCGAGGCAGTAGGGGCCCTAATGTGGGTAGCCAACA
TGACTCGGCCTGACCTCGCTTACACCGCGCACATGCTCGCCAAGTCCGGT
GACAACCTCGGGCCCGGGCACTGGAAGGCGGTAGTGAAAGCGCTGCAGTA
CCTGAAACGGGACGGTGAGCCTAGGGGTCACATATGGAGGCGCGACGGAG
GACGCCATAAAGCTATCGGCGTGGGTGGACGCCGATCACGCAACCTGTCC
AGATACGCGCCGCTCGGTATCGGGGGGCACGGCGATGCTCGGTGGAGGGG
CAATCAGCTGGTTTTCGCGGGCGCAGAGAGTAACCGCGACAGCGACGTCT
GA
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