mRNA_F-serratus_M_contig1292.2163.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1292.2163.1
Unique NamemRNA_F-serratus_M_contig1292.2163.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1292.2163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1292contigF-serratus_M_contig1292:267282..268377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1098
Cds size1095
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929234.7080445-CDS-F-serratus_M_contig1292:267281..2683761622929234.7080445-CDS-F-serratus_M_contig1292:267281..268376Fucus serratus maleCDSF-serratus_M_contig1292 267282..268376 +
1690962762.5128052-CDS-F-serratus_M_contig1292:267281..2683761690962762.5128052-CDS-F-serratus_M_contig1292:267281..268376Fucus serratus maleCDSF-serratus_M_contig1292 267282..268376 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1292.2163.1prot_F-serratus_M_contig1292.2163.1Fucus serratus malepolypeptideF-serratus_M_contig1292 267282..268376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1292.2163.1

>prot_F-serratus_M_contig1292.2163.1 ID=prot_F-serratus_M_contig1292.2163.1|Name=mRNA_F-serratus_M_contig1292.2163.1|organism=Fucus serratus male|type=polypeptide|length=365bp
PPPLPPPPPPPPPPPRLSSKAPSPPPLAVSDASKATPTPSTTPPTALATL
AASAVKSFIDPRPWPREHPRGCIANLVGGSSGCGQPVPSSTTGGISAQAG
GLLAPPSTLALPPPPPPRPPQQFMGSQSPSIPNHGVAPSASDGDVRTALV
TRPQPRSPPPQDPRKRDKRTVDEKGAEGEQEASDETSKDDFAADGAPTLA
DGGDSKGCSGESIQSGRKRSRIEYDADAEYEEDSVLASPTSGEVRAPVAA
ADNPGILQAGREYSGHAPNLNASPNGMLQVGLNESFVGTDHNAVARSSGL
MQVGRGYLGDGSGSLSFTSNGGGREEVGGWSADPEQGAWAAGVGVQANTT
SGQGESVSWRSWPDE
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mRNA from alignment at F-serratus_M_contig1292:267282..268377+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1292.2163.1 ID=mRNA_F-serratus_M_contig1292.2163.1|Name=mRNA_F-serratus_M_contig1292.2163.1|organism=Fucus serratus male|type=mRNA|length=1096bp|location=Sequence derived from alignment at F-serratus_M_contig1292:267282..268377+ (Fucus serratus male)
CCGCCGCCGCTACCGCCGCCGCCACCACCACCACCACCACCACCACGTTT
GTCGTCGAAAGCTCCCTCCCCCCCCCCTCTTGCTGTCTCCGACGCGTCGA
AAGCTACCCCAACTCCTTCGACAACGCCACCGACGGCGTTAGCCACGCTT
GCAGCGAGCGCCGTGAAATCTTTCATCGATCCTCGACCATGGCCGCGTGA
GCATCCCCGGGGGTGTATCGCTAACCTTGTTGGTGGAAGCAGCGGCTGTG
GTCAGCCAGTGCCTTCGTCGACGACTGGCGGCATAAGCGCTCAGGCAGGA
GGCTTACTTGCCCCTCCGTCCACGCTTGCCCTTCCTCCGCCTCCGCCTCC
TCGGCCGCCCCAGCAGTTCATGGGTTCGCAATCGCCCTCTATTCCAAATC
ATGGTGTAGCTCCGTCTGCCAGCGATGGCGACGTACGAACGGCTCTGGTC
ACTCGCCCGCAGCCTAGATCGCCGCCGCCTCAAGATCCCCGGAAGCGGGA
TAAACGAACCGTTGATGAAAAGGGCGCTGAGGGAGAGCAAGAGGCTTCAG
ATGAGACGTCCAAAGATGATTTCGCCGCTGACGGCGCCCCAACGCTTGCC
GACGGCGGCGACAGCAAGGGCTGTAGCGGCGAGAGTATTCAAAGCGGGAG
GAAACGCTCCCGGATAGAGTACGACGCTGATGCGGAATATGAAGAAGACA
GCGTCTTGGCTTCGCCAACGAGTGGGGAGGTACGCGCGCCTGTCGCCGCG
GCTGATAATCCAGGAATCCTACAGGCGGGCAGGGAATATTCTGGACATGC
ACCCAACCTGAACGCCAGCCCCAATGGCATGCTGCAGGTCGGTCTGAATG
AAAGTTTCGTCGGCACGGATCACAACGCGGTGGCCAGGTCAAGCGGTCTT
ATGCAGGTCGGTAGGGGCTACCTCGGCGATGGAAGCGGTAGTCTATCTTT
TACGTCGAACGGTGGAGGCAGGGAAGAAGTGGGCGGGTGGAGCGCAGATC
CCGAGCAGGGGGCTTGGGCCGCTGGAGTTGGTGTACAAGCCAATACGACA
TCGGGCCAGGGCGAAAGTGTCTCTTGGAGATCGTGGCCAGACGAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1292:267282..268377+

>mRNA_F-serratus_M_contig1292.2163.1 ID=mRNA_F-serratus_M_contig1292.2163.1|Name=mRNA_F-serratus_M_contig1292.2163.1|organism=Fucus serratus male|type=CDS|length=2190bp|location=Sequence derived from alignment at F-serratus_M_contig1292:267282..268377+ (Fucus serratus male)
CCGCCGCCGCTACCGCCGCCGCCACCACCACCACCACCACCACCACGTTT
GTCGTCGAAAGCTCCCTCCCCCCCCCCTCTTGCTGTCTCCGACGCGTCGA
AAGCTACCCCAACTCCTTCGACAACGCCACCGACGGCGTTAGCCACGCTT
GCAGCGAGCGCCGTGAAATCTTTCATCGATCCTCGACCATGGCCGCGTGA
GCATCCCCGGGGGTGTATCGCTAACCTTGTTGGTGGAAGCAGCGGCTGTG
GTCAGCCAGTGCCTTCGTCGACGACTGGCGGCATAAGCGCTCAGGCAGGA
GGCTTACTTGCCCCTCCGTCCACGCTTGCCCTTCCTCCGCCTCCGCCTCC
TCGGCCGCCCCAGCAGTTCATGGGTTCGCAATCGCCCTCTATTCCAAATC
ATGGTGTAGCTCCGTCTGCCAGCGATGGCGACGTACGAACGGCTCTGGTC
ACTCGCCCGCAGCCTAGATCGCCGCCGCCTCAAGATCCCCGGAAGCGGGA
TAAACGAACCGTTGATGAAAAGGGCGCTGAGGGAGAGCAAGAGGCTTCAG
ATGAGACGTCCAAAGATGATTTCGCCGCTGACGGCGCCCCAACGCTTGCC
GACGGCGGCGACAGCAAGGGCTGTAGCGGCGAGAGTATTCAAAGCGGGAG
GAAACGCTCCCGGATAGAGTACGACGCTGATGCGGAATATGAAGAAGACA
GCGTCTTGGCTTCGCCAACGAGTGGGGAGGTACGCGCGCCTGTCGCCGCG
GCTGATAATCCAGGAATCCTACAGGCGGGCAGGGAATATTCTGGACATGC
ACCCAACCTGAACGCCAGCCCCAATGGCATGCTGCAGGTCGGTCTGAATG
AAAGTTTCGTCGGCACGGATCACAACGCGGTGGCCAGGTCAAGCGGTCTT
ATGCAGGTCGGTAGGGGCTACCTCGGCGATGGAAGCGGTAGTCTATCTTT
TACGTCGAACGGTGGAGGCAGGGAAGAAGTGGGCGGGTGGAGCGCAGATC
CCGAGCAGGGGGCTTGGGCCGCTGGAGTTGGTGTACAAGCCAATACGACA
TCGGGCCAGGGCGAAAGTGTCTCTTGGAGATCGTGGCCAGACGAACCGCC
GCCGCTACCGCCGCCGCCACCACCACCACCACCACCACCACGTTTGTCGT
CGAAAGCTCCCTCCCCCCCCCCTCTTGCTGTCTCCGACGCGTCGAAAGCT
ACCCCAACTCCTTCGACAACGCCACCGACGGCGTTAGCCACGCTTGCAGC
GAGCGCCGTGAAATCTTTCATCGATCCTCGACCATGGCCGCGTGAGCATC
CCCGGGGGTGTATCGCTAACCTTGTTGGTGGAAGCAGCGGCTGTGGTCAG
CCAGTGCCTTCGTCGACGACTGGCGGCATAAGCGCTCAGGCAGGAGGCTT
ACTTGCCCCTCCGTCCACGCTTGCCCTTCCTCCGCCTCCGCCTCCTCGGC
CGCCCCAGCAGTTCATGGGTTCGCAATCGCCCTCTATTCCAAATCATGGT
GTAGCTCCGTCTGCCAGCGATGGCGACGTACGAACGGCTCTGGTCACTCG
CCCGCAGCCTAGATCGCCGCCGCCTCAAGATCCCCGGAAGCGGGATAAAC
GAACCGTTGATGAAAAGGGCGCTGAGGGAGAGCAAGAGGCTTCAGATGAG
ACGTCCAAAGATGATTTCGCCGCTGACGGCGCCCCAACGCTTGCCGACGG
CGGCGACAGCAAGGGCTGTAGCGGCGAGAGTATTCAAAGCGGGAGGAAAC
GCTCCCGGATAGAGTACGACGCTGATGCGGAATATGAAGAAGACAGCGTC
TTGGCTTCGCCAACGAGTGGGGAGGTACGCGCGCCTGTCGCCGCGGCTGA
TAATCCAGGAATCCTACAGGCGGGCAGGGAATATTCTGGACATGCACCCA
ACCTGAACGCCAGCCCCAATGGCATGCTGCAGGTCGGTCTGAATGAAAGT
TTCGTCGGCACGGATCACAACGCGGTGGCCAGGTCAAGCGGTCTTATGCA
GGTCGGTAGGGGCTACCTCGGCGATGGAAGCGGTAGTCTATCTTTTACGT
CGAACGGTGGAGGCAGGGAAGAAGTGGGCGGGTGGAGCGCAGATCCCGAG
CAGGGGGCTTGGGCCGCTGGAGTTGGTGTACAAGCCAATACGACATCGGG
CCAGGGCGAAAGTGTCTCTTGGAGATCGTGGCCAGACGAA
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