mRNA_F-serratus_M_contig1290.2150.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1290.2150.1
Unique NamemRNA_F-serratus_M_contig1290.2150.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1290.2150.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 422 bits (1085), Expect = 9.850e-139
Identity = 234/504 (46.43%), Postives = 301/504 (59.72%), Query Frame = 1
Query:   19 KEIASVKKNGVYKLVPASSVSAGQKVVGSRWVNKIKADDLFKRRMVLLEWTEVPGIDCGGTFAPVYRLQSIRMMLGIAAELD--YEVLDVQIAFLNADVDEEVYVKMVPGYETYDKSGVNFVMKVRKSHYDF*QSPKNWFGTMDDHLSNIGFRSLKSDPCQLL----------------------------------------RKLKKQLMDRFKMTYLGDASKVLGMMVTRDQENGMITIDQKDYTDDILERDVMPNCNVVFTPGVGPNIYFDQPADRLLDEQGKPRRS-------------RYDIFYAINQLARAMFKPSKAHMGAAKHVLRYLAGCVNFPITYRRGGFTLMAYTDANKRGHPGNGRLTSSYIMMLANGPIIFKVGLQSLLAQSIRGAELVATATTTKGSLFCRNMMMELGFTEGFLSLHVYIDNISTLHVVGNRTFSPRAKHIVLRYVFVQELMKKGKVTIHFVKTEQQLADLGTKHLKKYRHRFLIKLIN 1365
            +E+ S+    VYKLVP S+V  G+K + S+WV K KAD  FK R+V   W +VPG+DCG T+APV R+QS+RM+  I  E +  ++ +DV  AFL AD+ EEV+V+  PG+E  DK G + VMK+ KS Y   QSP NWF T+D  L  IGF +LKSDPC  L                                         +   +L  RFKMT LG+AS  LGM + RD+E   +TI Q+ Y   ILER  M       TPG G  I   QP D LLDE+   +               RYDI YA  QLAR+M KPSK HM AAKH LRYLAG ++F ITY++GGF L  ++D+N   +P NG+ TSSY+ MLAN P+ F+ GLQ L A S   AELVA+A   K ++FC NMM ELG  + F  L VY DN +TLH +GNR+FS R KHI LR+ F++EL+ +GK++IH+V TE  LAD+GTKH  K+R + L+ LIN
Sbjct:  151 REMKSLSNRKVYKLVPRSAVPPGRKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLIN 654          
BLAST of mRNA_F-serratus_M_contig1290.2150.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 431 bits (1109), Expect = 1.250e-133
Identity = 236/499 (47.29%), Postives = 305/499 (61.12%), Query Frame = 1
Query:    1 WEAAVDKEIASVKKNGVYKLVPASSVSAGQKVVGSRWVNKIKADDLFKRRMVLLEWTEVPGIDCGGTFAPVYRLQSIRMMLGIAAELD--YEVLDVQIAFLNADVDEEVYVKMVPGYETYDKSGVNFVMKVRKSHYDF*QSPKNWFGTMDDHLSNIGFRSLKSDPCQLL---------------------------RKLKKQLMDRFKMTYLGDASKVLGMMVTRDQENGMITIDQKDYTDDILERDVMPNCNVVFTPGVGPNIYFDQPADRLLDEQGKPRRS-------------RYDIFYAINQLARAMFKPSKAHMGAAKHVLRYLAGCVNFPITYRRGGFTLMAYTDANKRGHPGNGRLTSSYIMMLANGPIIFKVGLQSLLAQSIRGAELVATATTTKGSLFCRNMMMELGFTEGFLSLHVYIDNISTLHVVGNRTFSPRAKHIVLRYVFVQELMKKGKVTIHFVKTEQQLADLGTKHLKKYRHRFLIKLINEF 1371
            W AA ++E+ S+    VYKLVP S+V   +K + S+WV K KAD  FK R+V   W +VPG+DCG T+APV R+QS+RM+  I  E +  ++ +DV  AFL AD+ EEV+V+  PG+E  DK G + VMK+ KS Y   QSP NWF T+D  L  IGF +LKSDPC  L                             +K +L  RFKMT LG+AS VLGM + RD+E   +TI Q+ Y   ILER  +       TPG G  I   QP D LLDE+   +               RYDI YA  QLAR M KPSK HM AAKH LRYLAG ++F ITY++GGF L  ++D+N   +P NG+ TSSY+ +LAN P+ F+ GLQ L A S   AELVA+A     ++F  NMM ELGF + F  L VY DN +TLH +GNR+FS R KHI LR+ F++EL+ +GK++IH+V TE  LAD+GTKH  K+R + L+ LIN F
Sbjct: 1166 WNAAAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNF 1664          
BLAST of mRNA_F-serratus_M_contig1290.2150.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 391 bits (1005), Expect = 2.130e-125
Identity = 215/472 (45.55%), Postives = 294/472 (62.29%), Query Frame = 1
Query:    1 WEAAVDKEIASVKKNGVYKLVPASSVSAGQKVVGSRWVNKIKADDLFKRRMVLLEWTEVPGIDCGGTFAPVYRLQSIRMMLGIAAELDYEV--LDVQIAFLNADVDEEVYVKMVPGYETYDKSGVNFVMKVRKSHYDF*QSPKNWFGTMDDHLSNIGFRSLKSDPCQLLRKLKKQLMDRFKMTYLGDASKVLGMMVTRDQENGMITIDQKDYTDDILERDVMPNCNVVFTPGVGPNIYFDQPADRLLDEQGKPRR-------------SRYDIFYAINQLARAMFKPSKAHMGAAKHVLRYLAGCVNFPITYRRGGFTLMAYTDANKRGHPGNGRLTSSYIMMLANGPIIFKVGLQSLLAQSIRGAELVATATTTKGSLFCRNMMMELGFTEGFLSLHVYIDNISTLHVVGNRTFSPRAKHIVLRYVFVQELMKKGKVTIHFVKTEQQLADLGTKHLKKYRHRFLIKLINEF 1371
            W+AA DKEI S++   VYKLVP + V  G  V+GS+WV K+K ++  K R+V   W +VPG DCGGTFAPV RLQSIRM+  IAAE D +V  LDV+ AFL AD++E V+V+M PGYE  +   +  VMK+ KS     QSP++W  T+D  L  IGF  LKSD C  +      ++      Y+ D      +++ R    G       +YT  IL+R  M +C  + T G GP +   QP + LL+ +GK R              +RYDI Y  +Q ARAM  PSK HMGAAKH+LRYL+G  +F ITY+RGGF L A ++AN   +  NG+  SSYIMM++  P   K GLQSL A S   AELVA+A   K  +FC NMM ELGF   F S  ++ID+ +TL+V+GN+TFS   KH+ LR+ ++++++K+G+++IH++ TE  LAD+GT++L K RH++LI  I  F
Sbjct:  317 WKAATDKEIKSLQDLKVYKLVPRTDVPLGHNVIGSKWVFKVKPENTHKARLVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSDTCVYIYDHNNTVV--VLTLYVDD------LLIIR----GGAHHQPGNYTTSILDRFGMGSCKPLSTAGFGPELSVKQPEETLLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYLNKQRHQYLIDKIKNF 776          
BLAST of mRNA_F-serratus_M_contig1290.2150.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 392 bits (1008), Expect = 1.700e-123
Identity = 224/497 (45.07%), Postives = 285/497 (57.34%), Query Frame = 1
Query:    1 WEAAVDKEIASVKKNGVYKLVPASSVSAGQKVVGSRWVNKIKADDLFKRRMVLLEWTEVPGIDCGGTFAPVYRLQSIRMMLGIAAELDYEVLDVQIAFLNADVDEEVYVKMVPGYETYDKSGVNFVMKVRKSHYDF*QSPKNWFGTMDDHLSNIGFRSLKSDPCQLL---------------------------RKLKKQLMDRFKMTYLGDASKVLGMMVTRDQENGMITIDQKDYTDDILERDVMPNCNVVFTPGVGPNIYFDQPADRLLDEQGKPRRS-------------RYDIFYAINQLARAMFKPSKAHMGAAKHVLRYLAGCVNFPITYRRGGFTLMAYTDANKRGHPGNGRLTSSYIMMLANGPIIFKVGLQSLLAQSIRGAELVATATTTKGSLFCRNMMMELGFTEGFLSLHVYIDNISTLHVVGNRTFSPRAKHIVLRYVFVQELMKKGKVTIHFVKTEQQLADLGTKHLKKYRHRFLIKLINEF 1371
            W AA ++E+ S+    VYKLVP S V   +K + S+WV K KAD  FK R+V   W +VPG+DCG T+APV R+QS+RM+  I        +D  + F   D                   G + VMK+ KS Y   QSP NWF T+D  L  IGF +LKSDPC  L                             +K +L  RFKMT LG+AS VL M + RD+E   +TI Q+ Y   ILER  M       TPG G  I   QP D LLDE+   +               RYDI YA  QLAR M KPSK HM AAKH LRYLAG ++F ITY++GGF L  ++D+N   +P NG+ TSSY+ MLAN P+ F+ GLQ L A S   AELVA+A   K ++FC NMM ELGF + F  L VY DN +TLH +GNR+FS R KHI LR+ F++EL+ +GK++IH+V+TE  LAD+GTKH   +R + L+ LIN F
Sbjct:  524 WNAAAEREMKSLSDRKVYKLVPRSGVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACIT-------VDFNLIFDQMD------------------DGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNF 995          
BLAST of mRNA_F-serratus_M_contig1290.2150.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 352 bits (904), Expect = 2.210e-114
Identity = 199/429 (46.39%), Postives = 255/429 (59.44%), Query Frame = 1
Query:  211 VYRLQSIRMMLG-IAAELDYEVLDVQIAFLNADVDEEVYVKMVPGYETYDKS-GVNFVMKVRKSHYDF*QSPKNWFGTMDDHLSNIGFRSLKSDPCQLL---------------------------RKLKKQLMDRFKMTYLGDASKVLGMMVTRDQENGMITIDQKDYTDDILERDVMPNCNVVFTPGVGPNIYFDQPADRLLDEQGKPRRS-------------RYDIFYAINQLARAMFKPSKAHMGAAKHVLRYLAGCVNFPITYRRGGFTLMAYTDANKRGHPGNGRLTSSYIMMLANGPIIFKVGLQSLLAQSIRGAELVATATTTKGSLFCRNMMMELGFTEGFLSLHVYIDNISTLHVVGNRTFSPRAKHIVLRYVFVQELMKKGKVTIHFVKTEQQLADLGTKHLKKYRHRFLIKLINEF 1371
            ++R  S+R+    +   L ++ +DV  AFL AD+ EEV+V+  PG+E  DK  G + VMK+ KS Y   QSP NWF T+D  +  IGF +LKSDPC  L                             +K +L  RFKMT LG+AS VLGM + RD+E   +TI Q+ Y   ILER  M       TPG G  I   QP D LLDE+   +               RYDI YA  QLAR M KPSK HM AAKH LRYLAG ++F ITY++GGF L  ++D+N   +P NG+ TSSY+ MLAN P+ F+ GLQ L A S   AELVA+A   K ++FC NMM ELGF + F  L VY DN +TLH +GNR+FS R KHI LR+ F++EL+ +GK++IH+  TE  LAD+GTKH  K+R   L+ LIN F
Sbjct:    7 IFRFYSLRVGAPTVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKEDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNF 435          
BLAST of mRNA_F-serratus_M_contig1290.2150.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 332 bits (851), Expect = 1.550e-99
Identity = 195/524 (37.21%), Postives = 284/524 (54.20%), Query Frame = 1
Query:    1 WEAAVDKEIASVKKNGVYKLVPASSVSAGQKVVGSRWVNKIKADDLFKRRMVLLEWTEVPGIDCGGTFAPVYRLQSIRMMLGIAAELDYEV--LDVQIAFLNADVDEEVYVKMVPGYETYDKSGVNFVMKVRKSHYDF*QSPKNWFGTMDDHLSNIGFRSLKSDPCQLLRKLKKQLMDRFKMTYLGDASKVLGMMVTRDQENGMITIDQKDYTDDILERDVMPNCNVVFTPGVGPNIYFDQPADRLLDEQGKPRRS-------------RYDIFY-------------------------AINQLARAMFKPSKAHMGAAKHVL------------------------RY--LAGCVNF---PITYRRGGFTLMAYTDANKRGHPGNGRLTSSYIMMLANGPIIFKVGLQSLLAQSIRGAELVATATTTKGSLFCRNMMMELGFTEGFLSLHVYIDNISTLHVVGNRTFSPRAKHIVLRYVFVQELMKKGKVTIHFVKTEQQLADLGTKHLKKYRHRFLIKLIN 1365
            W  A ++EIAS+K+  VYKLVP ++V  G+K   S+WV K KAD  FK R+V   W +VPG+ CG T+APV RLQSIRM+  IA + + E+  +DV  AFL  D+ E V+V+  PG+E  +K G + VM++++S Y   QSP NWF T+D  L  IGF SLKSD C  L          FKMT +G+   VLGM + +D   G +TI Q+ Y+  ILER  M  C  + TPG G  +   QP D LLDE+   R               RYD+ +                          I+Q A +     +  M   K +                         RY  + GC+ +    + Y   G  L  ++++N   +P NG+ +S Y+ ML N P+ FK G+Q   A S   AEL+A+A   K ++FC N++ ELG  + F  + +Y DN +TLH +GNR+FS R KHI LR+ +++EL+ +G+++IH++ T+  +AD+GTKHL K+R + L+ +I+
Sbjct:  650 WNTAAEREIASLKERQVYKLVPPTAVPPGRKRTTSKWVFKRKADGSFKGRLVAQGWNQVPGLGCGSTYAPVCRLQSIRMLACIAVQFNLELDQIDVFTAFLYVDILENVFVEQPPGFEVKNKDGGDLVMQLQESLYGLAQSPSNWFHTIDPFLVEIGFVSLKSDTCVYL----------FKMTNMGEVKLVLGMDIKKDCNRGTLTISQEAYSKSILERFGMSECKPISTPGYGSELSNKQPEDTLLDEEETRRYQGIVGCLMYIAQVLRYDVMFKMTNMGEVKLVLGMDIKKDCNRGTLTISQEAYSKSILERFGMSECKPISTPGYGSELSNKQPEDTLLDEEETRRYQGIVGCLMYIAQVLRYDVIGSKLATFSESNWANNPDNGKSSSCYLTMLGNAPVSFKSGIQGPTAMSTMEAELIASALAMKEAVFCSNILTELGLGKEFAQVPLYCDNTATLHALGNRSFSSRTKHIALRFFYIRELISEGRISIHYIPTDSNIADIGTKHLNKHRLKHLLDIIS 1163          
BLAST of mRNA_F-serratus_M_contig1290.2150.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 317 bits (812), Expect = 3.150e-97
Identity = 189/502 (37.65%), Postives = 277/502 (55.18%), Query Frame = 1
Query:    1 WEAAVDKEIASVKKNGVYKLVPASSVSAGQKVVGSRWVNKIKADDLFKRRMVLLEWTEVPGIDCGGTFAPVYRLQSIRMMLGIAAELDYEV--LDVQIAFLNADVDEEVYVKMVPGYETYDKS-GVNFVMKVRKSHYDF*QSPKNWFGTMDDHLSNIGFRSLKSDPC---------------------------QLLRKLKKQLMDRFKMTYLGDASKVLGMMVTRDQENGMITIDQKDYTDDILERDVMPNCNVVFTPGVGPNIYFDQPADRLLDEQGKPRR-------------SRYDIFYAINQLARAMFKPSKAHMGAAKHVLRYLAGCVNFPITYRRGGFTLMAYTDANKRGHPGNGRLTSSYIMMLANGPIIFKVGLQSLLAQSIRGAELVATATTTKGSLFCRNMMMELGFTEGFLSLHVYIDNISTLHVVGNRTFSPRAKHIVLRYVFVQELMKKGKVTIHFVKTEQQLADLGTKHLKKYRHRFLIKLINEFRA 1377
            W++A+D E+ ++ K+ V+K V  S V   + +  +R+V KIKAD  FK R+V     +  G   G  +APV RL SIRM+  IA E  +EV  LDV  AFLNA  D +VYV+  PG E  D + G   V K+ KS Y   QSP  W   ++D L   G++  +SDPC                           +++ + KK+LMD F+MT +G+  +V+G+ V RD E+G + I Q  Y  DIL+R  M   N V TPG G  +  +QP D+LL  + K R              +RYD+ YA++QL RA   P++ HM AAKH+LRYL G  + PI Y++G F L  +TD++   +P NGR T+ Y+  L  G I +    Q+L AQ+   AEL A + + + +++  N M E+GF + F S+ +  D+   L V  N  FS R KHI LR+ F++EL K  ++T+H   +   LAD+ TKHL K R   +++LI +++ 
Sbjct:  234 WKSAIDTEMGNLAKHKVFKKVRISLVPKDEDIFDTRFVFKIKADSRFKARLVAGGHRQRAGRHFGRNYAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGF-KTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLIKDYKC 734          
BLAST of mRNA_F-serratus_M_contig1290.2150.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 327 bits (839), Expect = 3.430e-96
Identity = 200/496 (40.32%), Postives = 261/496 (52.62%), Query Frame = 1
Query:    1 WEAAVDKEIASVKKNGVYKLVPASSVSAGQKVVGSRWVNKIKADDLFKRRMVLLEWTEVPGIDCGGTFAPVYRLQSIRMMLGIAAELD--YEVLDVQIAFLNADVDEEVYVKMVPGYETYDKSGVNFVMKVRKSHYDF*QSPKNWFGTMDDHLSNIGFRSLKSDPCQLL---------------------------RKLKKQLMDRFKMTYLGDASKVLGMMVTRDQENGMITIDQKDYTDDILERDVMPNCNVVFTPGVGPNIYFDQPADRLLDEQ---------GKPRRSRYDIFYAINQLARAMFKPSKAHMGAAKHVLRYLAGCVNFPITYRRGGFTLMAYTDANKRGHPGNGRLTSSYIMMLANGPIIFKVGLQSLLAQSIRGAELVATATTTKGSLFCRNMMMELGFTEGFLSLHVYIDNISTLHVVGNRTFSPRAKHIVLRYVFVQELMKKGKVTIHFVKTEQQLADLGTKHLKKYRHRFLIKLINEFR 1374
            W AA ++E+ S+    VYKLVP S+V   +K + S+WV K KAD  FK R+V   W +VPG+DCG T+APV R+QS+RM+  I  E +  ++ +DV  AFL AD+ EEV+V+  PG+E  DK G + VMK+ KS Y   QSP NWF T+D  L  IGF +LKSDPC  L                             +K +L  RFKMT LG+AS VLGM + RD+E   +TI Q+ Y   ILER  M       TPG G  I   QP   LLDE+         G P    +   Y    LAR M KPSK HM AAKH LR+L G ++F ITY++GGF L  ++D+N   +P NG+ T+SY+ ML N P+            S  G                                          H +  R  S R KHI LR+ FV+EL+ +GK++IH+V TE  LAD+GTKH  K+R + L+ LIN  R
Sbjct: 1331 WNAAAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPDYTLLDEKETRKYQGIVGSPMYIAHXDQYTW--LARPMAKPSKVHMVAAKHTLRFLVGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTASYLTMLVNAPM------------SXAGER---------------------------------------SHELQVRAASSRTKHIALRFFFVRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLVDLINNLR 1773          
BLAST of mRNA_F-serratus_M_contig1290.2150.1 vs. uniprot
Match: A0A6H5KPN4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN4_9PHAE)

HSP 1 Score: 301 bits (771), Expect = 1.410e-94
Identity = 172/376 (45.74%), Postives = 217/376 (57.71%), Query Frame = 1
Query:    1 WEAAVDKEIASVKKNGVYKLVPASSVSAGQKVVGSRWVNKIKADDLFKRRMVLLEWTEVPGIDCGGTFAPVYRLQSIRMMLGIAAELDYEV--LDVQIAFLNADVDEEVYVKMVPGYETYDKSGVNFVMKVRKSHYDF*QSPKNWFGTMDDHLSNIGFRSLKSDPCQLLRKLKKQLMDRFKMTYLGDASKVLGMMVTRDQENGMITIDQKDYTDDILERDVMPNCNVVFTPGVGPNIYFDQPADRLLDEQGKPRRS-------------RYDIFYAINQLARAMFKPSKAHMGAAKHVLRYLAGCVNFPITYRRGGFTLMAYTDANKRGHPGNGRLTSSYIMMLANGPIIFKVGLQSLLAQSIRGAELVATATTTK 1083
            W AA ++EIAS+K+  VYKLVP ++V  G+K + S+WV K KAD  FK R+V   W +VPG+DCG T+APV RLQSIRM+  I  + + E+  +DV  AF  AD+ E V+V+  PG+E  DK G + VM+++KS Y   Q   NWF T+D  L        KSD C  L          FKMT +G+   VLGM + RD   G +TI QK YT  ILER  M  C    TPG G  +   QP D LL E+   R               RYDI YA  QLAR M KPSK HM AAKH LRY+AG  NF ITY+  GF L  ++D+N   +P NG+ TS Y+ ML N P+  K G+Q   A S   AEL+A+A   K
Sbjct:   65 WNAAAEREIASLKERQVYKLVPRTAVPPGRKRIKSKWVFKRKADGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIVVQFNLELDQMDVSTAFFYADILENVFVERPPGFEVKDKDGGDLVMQLQKSLYGLAQIASNWFHTIDPFLVENISVPRKSDTCVYL----------FKMTDMGEVKLVLGMEIKRDHNQGTLTISQKAYTKSILERFGMSECKPTSTPGYGSELSNKQPEDTLLGEEETRRYQGIVGCLMYIAQVLRYDIMYATGQLARPMEKPSKIHMVAAKHTLRYVAGTTNFRITYKSEGFKLATFSDSNWANNPDNGKSTSCYLTMLGNTPVSLKSGIQGPTAMSTMEAELIASALAMK 430          
BLAST of mRNA_F-serratus_M_contig1290.2150.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 296 bits (758), Expect = 5.870e-86
Identity = 176/423 (41.61%), Postives = 231/423 (54.61%), Query Frame = 1
Query:    1 WEAAVDKEIASVKKNGVYKLVPASSVSAGQKVVGSRWVNKIKADDLFKRRMVLLEWTEVPGIDCGGTFAPVYRLQSIRMMLGIAAELDYEV--LDVQIAFLNADVDEEVYVKMVPGYETYDKSGVNFVMKVRKSHYDF*QSPKNWFGTMDDHLSNIGFRSLKSDPCQL-------LRKLKKQLMDRFKMTYLGDASKVLGMMVTRDQENGMITIDQKDYTDDILERDVMPNCNVVFTPGVGPNIYF-----------------------DQPADRLLDEQGKPRRS-------------------------RYDIFYAINQLARAMFKPSKAHMGAAKHVLRYLAGCVNFPITYRRGGFTLMAYTDANKRGHPGNGRLTSSYIMMLANGPIIFKVGLQSLLAQSIRGAELVATATTTKGSLFC 1098
            W AA ++EIAS+K+  V+KLVP ++V  G+K + SRWV K K D  FK R+V   W +VPG+DCG T+APV RLQSIRM+  IA + + E+  +DV  AFL AD+ E V+V+  PG+E  DK G + VM+++KS Y   QSP NWF T+D  L  I + +L  D   L       +  +KK+L  RFKMT +G+   VLGM + RD+  G +TI Q+ YT  ILER  M  C    TPG GP   +                       DQ A        +  R                          RYDI YA  QLAR M KPSK HM AAKH LRY+AG  +F ITY+  GF L   +D+N   +P NG+ T+ Y+ ML N P+ FK G+Q   A S   AEL+A+A   K ++FC
Sbjct:  851 WNAAAEREIASLKERQVFKLVPRTAVPPGRKRIKSRWVFKRKVDGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIVYLTLYVDDLLLASNNSNAISMIKKKLKQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYTKSILERFGMSECKPTSTPGXGPQPRYPDDFPESVYQVHLREIRDVGMQTDQHAWLWFGALQQATRGHSAKRGGNQTLSGHRGVLVYIAQVLRYDIMYATGQLARPMAKPSKIHMVAAKHTLRYVAGTTDFRITYKSEGFKLATLSDSNWANNPDNGKSTACYLTMLGNAPVRFKSGIQGPTAMSTMEAELIASALAMKEAVFC 1273          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1290.2150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JME8_9PHAE9.850e-13946.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE1.250e-13347.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6R7_9PHAE2.130e-12545.55Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KNH5_9PHAE1.700e-12345.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L5U2_9PHAE2.210e-11446.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K129_9PHAE1.550e-9937.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF46_9PHAE3.150e-9737.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J842_9PHAE3.430e-9640.32Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KPN4_9PHAE1.410e-9445.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JIN1_9PHAE5.870e-8641.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1290contigF-serratus_M_contig1290:244159..245618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score137.1
Seed ortholog evalue1.4e-29
Seed eggNOG ortholog7070.TC002223-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SH01@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons2
Model size1380
Cds size942
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1290.2150.1prot_F-serratus_M_contig1290.2150.1Fucus serratus malepolypeptideF-serratus_M_contig1290 244159..245180 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929233.6334457-CDS-F-serratus_M_contig1290:244158..2450461622929233.6334457-CDS-F-serratus_M_contig1290:244158..245046Fucus serratus maleCDSF-serratus_M_contig1290 244159..245046 -
1690962761.9169142-CDS-F-serratus_M_contig1290:244158..2450461690962761.9169142-CDS-F-serratus_M_contig1290:244158..245046Fucus serratus maleCDSF-serratus_M_contig1290 244159..245046 -
1622929233.651953-CDS-F-serratus_M_contig1290:245126..2451801622929233.651953-CDS-F-serratus_M_contig1290:245126..245180Fucus serratus maleCDSF-serratus_M_contig1290 245127..245180 -
1690962761.932248-CDS-F-serratus_M_contig1290:245126..2451801690962761.932248-CDS-F-serratus_M_contig1290:245126..245180Fucus serratus maleCDSF-serratus_M_contig1290 245127..245180 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929233.6692402-UTR-F-serratus_M_contig1290:245180..2456181622929233.6692402-UTR-F-serratus_M_contig1290:245180..245618Fucus serratus maleUTRF-serratus_M_contig1290 245181..245618 -
1690962761.940625-UTR-F-serratus_M_contig1290:245180..2456181690962761.940625-UTR-F-serratus_M_contig1290:245180..245618Fucus serratus maleUTRF-serratus_M_contig1290 245181..245618 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1290.2150.1

>prot_F-serratus_M_contig1290.2150.1 ID=prot_F-serratus_M_contig1290.2150.1|Name=mRNA_F-serratus_M_contig1290.2150.1|organism=Fucus serratus male|type=polypeptide|length=314bp
MDDHLSNIGFRSLKSDPCQLLRKLKKQLMDRFKMTYLGDASKVLGMMVTR
DQENGMITIDQKDYTDDILERDVMPNCNVVFTPGVGPNIYFDQPADRLLD
EQGKPRRSRYDIFYAINQLARAMFKPSKAHMGAAKHVLRYLAGCVNFPIT
YRRGGFTLMAYTDANKRGHPGNGRLTSSYIMMLANGPIIFKVGLQSLLAQ
SIRGAELVATATTTKGSLFCRNMMMELGFTEGFLSLHVYIDNISTLHVVG
NRTFSPRAKHIVLRYVFVQELMKKGKVTIHFVKTEQQLADLGTKHLKKYR
HRFLIKLINEFRA*
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mRNA from alignment at F-serratus_M_contig1290:244159..245618-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1290.2150.1 ID=mRNA_F-serratus_M_contig1290.2150.1|Name=mRNA_F-serratus_M_contig1290.2150.1|organism=Fucus serratus male|type=mRNA|length=1460bp|location=Sequence derived from alignment at F-serratus_M_contig1290:244159..245618- (Fucus serratus male)
TGGGAGGCGGCGGTAGACAAGGAGATCGCCAGCGTCAAGAAGAACGGTGT CTACAAACTGGTACCTGCGTCCTCCGTCTCTGCTGGACAAAAGGTGGTTG GCTCACGCTGGGTCAACAAGATCAAGGCGGACGACCTCTTCAAACGTCGT ATGGTATTGTTGGAATGGACGGAGGTACCCGGGATCGACTGCGGCGGCAC CTTCGCACCTGTCTATAGACTGCAAAGCATCCGCATGATGCTGGGTATTG CGGCCGAGCTCGACTACGAGGTGCTGGACGTGCAAATAGCGTTCCTCAAC GCTGATGTCGACGAGGAGGTCTACGTCAAGATGGTTCCCGGCTACGAGAC ATACGACAAGTCTGGAGTTAATTTCGTGATGAAAGTCAGGAAGAGTCATT ACGATTTTTGACAGAGCCCAAAGAACTGGTTCGGCACCATGGACGATCAT CTCTCGAACATCGGGTTCCGCTCGCTCAAGTCGGATCCGTGCGTCTACGT GTTCGACGTCAAGACCGGCACTGCCATCTGACACTCTATGTGGATGACAT TCTTCTACTTGGCAACAACAAGCAGCTCCTCCGCAAGCTGAAGAAGCAAC TAATGGACCGTTTCAAGATGACGTACCTCGGAGACGCGTCGAAGGTGCTC GGCATGATGGTCACTCGGGACCAAGAAAACGGGATGATCACTATCGACCA AAAGGACTACACGGATGATATTCTCGAGCGCGATGTCATGCCAAACTGCA ATGTCGTGTTTACGCCGGGCGTCGGACCAAATATCTACTTCGACCAGCCA GCAGACAGGCTGTTGGACGAACAAGGAAAACCGCGCAGGTCGCGGTATGA CATCTTCTACGCGATCAATCAGCTGGCGAGAGCAATGTTCAAGCCTTCGA AAGCTCACATGGGGGCGGCCAAACACGTACTCCGGTACTTGGCCGGGTGC GTGAATTTCCCGATCACTTACAGGCGAGGTGGCTTTACGCTAATGGCTTA CACTGACGCTAACAAGCGAGGGCACCCCGGCAACGGTAGATTAACCTCGT CGTACATCATGATGCTCGCCAACGGCCCGATCATCTTCAAAGTGGGACTC CAGAGTCTACTCGCTCAATCGATTAGGGGGGCGGAGCTCGTTGCAACTGC CACCACGACGAAGGGGTCACTCTTCTGCAGAAACATGATGATGGAGTTGG GTTTCACGGAGGGATTTTTGAGCCTTCATGTCTACATCGACAACATATCG ACGTTGCACGTGGTGGGAAACAGGACTTTTAGTCCAAGGGCGAAGCACAT CGTCCTCAGATACGTTTTTGTTCAAGAGCTAATGAAGAAAGGAAAAGTCA CCATCCATTTCGTCAAGACGGAGCAACAACTCGCCGATTTGGGAACGAAA CATCTAAAAAAATATCGTCACCGCTTCCTCATCAAGCTCATCAACGAGTT CAGAGCCTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1290:244159..245618-

>mRNA_F-serratus_M_contig1290.2150.1 ID=mRNA_F-serratus_M_contig1290.2150.1|Name=mRNA_F-serratus_M_contig1290.2150.1|organism=Fucus serratus male|type=CDS|length=1884bp|location=Sequence derived from alignment at F-serratus_M_contig1290:244159..245618- (Fucus serratus male)
ATGGACGATCATCTCTCGAACATCGGGTTCCGCTCGCTCAAGTCGGATCC
GTGCATGGACGATCATCTCTCGAACATCGGGTTCCGCTCGCTCAAGTCGG
ATCCGTGCCAGCTCCTCCGCAAGCTGAAGAAGCAACTAATGGACCGTTTC
AAGATGACGTACCTCGGAGACGCGTCGAAGGTGCTCGGCATGATGGTCAC
TCGGGACCAAGAAAACGGGATGATCACTATCGACCAAAAGGACTACACGG
ATGATATTCTCGAGCGCGATGTCATGCCAAACTGCAATGTCGTGTTTACG
CCGGGCGTCGGACCAAATATCTACTTCGACCAGCCAGCAGACAGGCTGTT
GGACGAACAAGGAAAACCGCGCAGGTCGCGGTATGACATCTTCTACGCGA
TCAATCAGCTGGCGAGAGCAATGTTCAAGCCTTCGAAAGCTCACATGGGG
GCGGCCAAACACGTACTCCGGTACTTGGCCGGGTGCGTGAATTTCCCGAT
CACTTACAGGCGAGGTGGCTTTACGCTAATGGCTTACACTGACGCTAACA
AGCGAGGGCACCCCGGCAACGGTAGATTAACCTCGTCGTACATCATGATG
CTCGCCAACGGCCCGATCATCTTCAAAGTGGGACTCCAGAGTCTACTCGC
TCAATCGATTAGGGGGGCGGAGCTCGTTGCAACTGCCACCACGACGAAGG
GGTCACTCTTCTGCAGAAACATGATGATGGAGTTGGGTTTCACGGAGGGA
TTTTTGAGCCTTCATGTCTACATCGACAACATATCGACGTTGCACGTGGT
GGGAAACAGGACTTTTAGTCCAAGGGCGAAGCACATCGTCCTCAGATACG
TTTTTGTTCAAGAGCTAATGAAGAAAGGAAAAGTCACCATCCATTTCGTC
AAGACGGAGCAACAACTCGCCGATTTGGGAACGAAACATCTAAAAAAATA
TCGTCACCGCTTCCTCATCAAGCTCATCAACGAGTTCAGAGCCTGACAGC
TCCTCCGCAAGCTGAAGAAGCAACTAATGGACCGTTTCAAGATGACGTAC
CTCGGAGACGCGTCGAAGGTGCTCGGCATGATGGTCACTCGGGACCAAGA
AAACGGGATGATCACTATCGACCAAAAGGACTACACGGATGATATTCTCG
AGCGCGATGTCATGCCAAACTGCAATGTCGTGTTTACGCCGGGCGTCGGA
CCAAATATCTACTTCGACCAGCCAGCAGACAGGCTGTTGGACGAACAAGG
AAAACCGCGCAGGTCGCGGTATGACATCTTCTACGCGATCAATCAGCTGG
CGAGAGCAATGTTCAAGCCTTCGAAAGCTCACATGGGGGCGGCCAAACAC
GTACTCCGGTACTTGGCCGGGTGCGTGAATTTCCCGATCACTTACAGGCG
AGGTGGCTTTACGCTAATGGCTTACACTGACGCTAACAAGCGAGGGCACC
CCGGCAACGGTAGATTAACCTCGTCGTACATCATGATGCTCGCCAACGGC
CCGATCATCTTCAAAGTGGGACTCCAGAGTCTACTCGCTCAATCGATTAG
GGGGGCGGAGCTCGTTGCAACTGCCACCACGACGAAGGGGTCACTCTTCT
GCAGAAACATGATGATGGAGTTGGGTTTCACGGAGGGATTTTTGAGCCTT
CATGTCTACATCGACAACATATCGACGTTGCACGTGGTGGGAAACAGGAC
TTTTAGTCCAAGGGCGAAGCACATCGTCCTCAGATACGTTTTTGTTCAAG
AGCTAATGAAGAAAGGAAAAGTCACCATCCATTTCGTCAAGACGGAGCAA
CAACTCGCCGATTTGGGAACGAAACATCTAAAAAAATATCGTCACCGCTT
CCTCATCAAGCTCATCAACGAGTTCAGAGCCTGA
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