mRNA_F-serratus_M_contig129.2137.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig129.2137.1
Unique NamemRNA_F-serratus_M_contig129.2137.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig129.2137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig129contigF-serratus_M_contig129:248876..255764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size787
Cds size591
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig129.2137.1prot_F-serratus_M_contig129.2137.1Fucus serratus malepolypeptideF-serratus_M_contig129 249072..255764 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929230.0302873-UTR-F-serratus_M_contig129:248875..2490711622929230.0302873-UTR-F-serratus_M_contig129:248875..249071Fucus serratus maleUTRF-serratus_M_contig129 248876..249071 +
1690962760.1251545-UTR-F-serratus_M_contig129:248875..2490711690962760.1251545-UTR-F-serratus_M_contig129:248875..249071Fucus serratus maleUTRF-serratus_M_contig129 248876..249071 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929230.0478833-CDS-F-serratus_M_contig129:249071..2490911622929230.0478833-CDS-F-serratus_M_contig129:249071..249091Fucus serratus maleCDSF-serratus_M_contig129 249072..249091 +
1690962760.1337528-CDS-F-serratus_M_contig129:249071..2490911690962760.1337528-CDS-F-serratus_M_contig129:249071..249091Fucus serratus maleCDSF-serratus_M_contig129 249072..249091 +
1622929230.0693686-CDS-F-serratus_M_contig129:255193..2557641622929230.0693686-CDS-F-serratus_M_contig129:255193..255764Fucus serratus maleCDSF-serratus_M_contig129 255194..255764 +
1690962760.1414495-CDS-F-serratus_M_contig129:255193..2557641690962760.1414495-CDS-F-serratus_M_contig129:255193..255764Fucus serratus maleCDSF-serratus_M_contig129 255194..255764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig129.2137.1

>prot_F-serratus_M_contig129.2137.1 ID=prot_F-serratus_M_contig129.2137.1|Name=mRNA_F-serratus_M_contig129.2137.1|organism=Fucus serratus male|type=polypeptide|length=197bp
MRRRRQSPLPKRRTAPAFLLFVSTSAPLTTTGSGFAVVSSAEDPSFVRVS
SGSSRHDSGTIGNVVRLGDRCRQGGRPPSPDEGGSFFCGARGRDDATVFE
RKCGSTLQRRSHEGGGVLTAMKAFVSHRPPLPRAVATTGGSFLGRRVAEH
FSRSSGGDTGRGPGFMRDRAIHGDWGSRIKFIGDGVSGEDVTSSRCA
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mRNA from alignment at F-serratus_M_contig129:248876..255764+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig129.2137.1 ID=mRNA_F-serratus_M_contig129.2137.1|Name=mRNA_F-serratus_M_contig129.2137.1|organism=Fucus serratus male|type=mRNA|length=6889bp|location=Sequence derived from alignment at F-serratus_M_contig129:248876..255764+ (Fucus serratus male)
CGCGGAGGGATATGGAGAAGTGAAGTCCAAGCTTGGAGTCAGTAAACGAT
CAGGCTTATCCATAGTAAACATTGGACTGCTGCGCTAAAATTTCATCCTC
GTAGGGGGGGTTGTACTCTAGCTGGAGACGGCGGCGTACTACTGTCTGCA
CCGGTTTTCTGAGGGACACAGAGGAGGAGAAGAGAAGATACTCAACATGC
GGAGGCGACGACAAAGGTAAGTACATTGCTGTGTCCGAAGAGGCACCGCC
GCATTGGCTTACCCCGCCTGAGCAAAGGAAATAAGATTATGGAGGACTGT
GCTTGGAACCTTGGCCATTATTATAACAGATGGTTTAGAATAGTAGATGC
GTTCAGATTTTGAAGCTCACATGAGCGAGGAAATGCTGAATAAGGCGACA
GTTACGTAATTCAAAACCTGCGTCATATTGCCAGCAGGACTGTCCCACTG
GCTATACACTCACATTTTTTAAAGAAAATCTTTAAACAGTATAATACCGT
ATACTGTAGTACAACAGGTATAATATATTTCTTTGATTTGACCAGATTTG
ACGGTCCTCAGGAGCGCTCGGGTGCAACTCCATCCACCCTCGACCCTCGG
GTTCGACACACCAAAAAGTATACGACAGATAATTATTTAATACTGCAATA
CATTAAGCAAGCACAAAACTATTAGTATTACCCTGGTACCTGTACATGAG
TCGAAAACATGCACCAGTACAAACAGACAGACAGCACAGCTAGTATTGTG
TTTTCTTCCCATCCATTCTGGACATCAAGTTCGTTGGACGTACCAGCCGG
GGTCACACAGGATTTTCCATCCACCTTCCTTCTGCGGTGCGTGCCTTGAT
TTTTGTCGCGAGAAGGATTCAGCCATTCCTTTCCCTCGTCGACCGTGAAG
TCGAATTTTGTGTACTAACGAATTAATCGTTCTCCACCCGTTGGGCATTT
TTATTTTGGTTTTTTAGTTTTTAGTGAGAAAAATCCCGTTTGCGGGGATC
GAACTCACGTCCCAACGTGTCAGAAGGTTACGAGGTGCCTACTGAGCTAC
CGGGGTCGATCGGCTATTAATTTTTTTTTGTCTTTTTTTTGGGGGTATGG
CTATTTGGCCCACCGGTGGGCTATTCTCTTGTTTACCCCCCCACCTGGAT
CTCGCGTCAGAAGACTTGGTTGGTCACAGTACATGCATGGGTGTGTTAGG
GTAAGGGTTAGCCACTATCGGGTCTATCGTGCAGCCCAAACGATTCCGTC
TACGTGCTACCACGGCCGGTGGGGTGGTTGGTGTTTTCTGGTATGTATGG
CTATTTGCCCTTACATACCAGAAAACACCAACCACCCCACCGGCCGTAAC
ATCACGTAGACAGGACCGTTTGGGCTGCACGAATGACCCCATGATAGCCC
TGCAACGCGCCAACACACTCGTGCATGCATTGTGACCAACCGTGTCTTCT
GACGCGAGATCCAGGTGGTGGGGTAAATTTGGGTATGGCCCACCGGTGGG
GCAAATAGCCATTCCCTTTTTTTTAAGAATAAAGTGAACTCATGTTAACC
TTCTCATTAATATCAATATAATAGCATCCACTCAGTCAGGGGGGGTGATT
GTCAAAACGTCTGGGTGGGGATATTGGCGACAAAAACTCTTCATGGGATT
GATTCGGCTAATACTAATATTCCCCAATAATGGTAGTATTAGACTAATAG
CCTAGGGTCAACACTATGTATGCATGTATGTATGTATGTATGTATGTATG
TATGGTCACACATATAGCTAAAGTATGGATCAACCGGGTAAGCTTGCCAG
TCCTGCACGTGATCAGCTGTAGAGGGAAAATAAGTATTTCCCTGTCCGCT
TTCGTGCCTGAGAATTAGGACTCGCGAGACGGCTTCGGCAATCCCGTCCA
GCGTCAGCCTGCTCATCTCCATACTCAGGCTGAATCTGGTGCTTACTTAC
GAGATCTCTCCCGAGTTCCTCGGCGGCGTTCATGTATTGATTATAACCGC
CACACGCCATCGGGTCAGTCCCGAGTTTATCGGGTCACGCAACTGCGTAC
CGATGGCGTTCACTGCCGAGAGTCCGCCGGATGGTGGCCAGTAAACCTCA
AGGTAGTTCCGAACGATTGCTGCCTTGACAGGTCACCATGGACCAAGTAA
TATCCGCCTCTCTTTCCCACATCCACTATTGGTATGAAGCGGGCAGGTTG
AAAGGTAAATCACACGTCGGACAACTCATGAGTTAACTCAGTTGTGTTGT
ATAACTCACGTGAGTGGAAGTACCACCACTCAGTTGTGTTGTATAACTCA
CCCGAGTGGAAAGTACCATTAATACCACTCAGTTGTGTTGTATAACTCAC
CCGAGTGGAAAGTGCTACCACTCAGTTATGTTGTTTAACTCACGTGAGTG
GATGTACCACCACTCAGTTATGTTGTATAACTCACCCAAGTGGAAAGTAC
TACCACTCAGTTATGTTGTATAACTCACCCTATTGAAAGTACCAGCACTC
AAGTTATATTTTATAACTCACCCTGCTGGAAGTGCCTGCACTCAGTTATA
ATTTTAACTCACCCGGCTGGAAGTACCTGCACTCAGTTATAATTATAACT
CACCCTGCTGGAAGTACCAGCACTCAGTTATAATTATAACTCACCGCTGA
GTTATGCAAATGAGTTAACTCGAGTTAACTCACCCGTGGGCAACAAGCAG
GGAATGTTGAGCAGAACCCTTCAGAAGGTCTAGGTGTGGTCTGATTTTTC
TTTAAACTCACCCTGCGGCAATTACCTGTACTCAGTTATAATTATAACTC
ACCCCACTGGAAATACCTGCACTCAGTTATAATTATAACTCACCCTGCTC
GAAATACCTGCACTCAGTTATAATTATAACTCACCCTGCTCGAAATACCT
GCACTCAGTTATAATTAATACTAACCAAGGCCGGTCGACCCCGGTAGCTC
AGTAGGCACCTCGAAACCTTCTGACACGTTGGGACGTGAGTTCGATCCCC
GCAAACGGGATTTTTCTCTCTAAAAACTAAAAAACCAAAATAAAAATGCC
CAACGGGTGGAGAACGATTAATTCGTAGTACACAAAATTCGACTTCACGG
TCGACGAGGGAAAGGAATGGCTGAATCCTTCTCGCGACAAAATTCAAGGC
ACGCACCGCAGAAGGAAGGTGGATGGAAAATCCTGTGTGACCTTCGTCCT
GTGTGACCCCGGCTGGTACGTCCAACGAGCTTGATGTCCAGAATGGACGG
GAAGAAAACACACACACATGCTGGAAGTACCAGCACTCAAGTTATATTTT
ATAACTCACTCAGGTGGAAAGTACTACCACTCAGTTGTGTTGTACCGGTA
TAACTCACCCAGGTGGAAAGTACTACCACTCAGTTGTGTTTTATAACTCA
CCGAGGTGGAAAGTACTACCACTCAGTTGTGTTGTATAACTCACCCAGGT
GGAAAGTACCACCACTCAGTTATGTTGTATAACTCACCGCTGAGTTATGT
GAAAATGAGTTAACTCGAGTTAACTTGAGTTGAGTTGTCCGATGTGTGAA
AGGTATATATTATACCATGCAAAGGGAAGGAATATTGTCATAGTCCTAGG
GAGTTGCCAAACATTACACCCTTCTACAGGGTTATGCTATGTTGAGGGAC
ACACGCCCCTTATTTCAGTCTTTTGTTTTCTGAGGTCGTCTGAGGATTAC
TTCCTTGCTTCTTTCTGTTTTCTCCTTCCTTCTTTCTAGAAGTGACGCTA
ATATATGTTATTTGTTTCTTAAAACCAAGCTTGAACCTGCCCTGCCTGTG
GCCAGGGTGCACAAACAAGTACCGTATGTATGCATGGTCATCACACATAG
CAGAGTATGGATCAACCGGGTCAGGTTGCCAATCCTGCTCGTGTTCAGCT
GAACAGGGAAAATGAATATTCCCCCGTCCCCGTACGTGCCTGAATTTTTG
GTCTCACGAGACGGGTTCAGCCGTCTCGTCCCGCGTCAGCCTGCTCATTC
TCCATACTCAGGCTGAATCTGGTGCTTACTCGCGGGATTTCTCCCGATTT
CCGCGGCGGCGTCCATTCATTTATTTAAATTGCCACGCGCCATTGGGTCA
GTCCCGAGTTTATCTGGTCAAGTAATTGCGTACCAATGGCGTTCACTGCC
GAGAGTCCGCCGGCACAGGGCCGGTAGTCCTCAAGGTAGTTTCAGAAACG
GGTGCTGCCATTTTGCAAGTCACCATGGACTATGACCAATTAATGTGTGC
CTCTCTTTTCCCATACCCACTATACTATTATACTGTTATTAGTATTGGTA
TGAAGTTGCCATGTTTGATACCTGGTAGTATAATATCGGGAAGAATTTTC
TCGTTCAAAGTCTCAGCACGTACTCGTAGGCCTCCTCATTTCCAATATTA
CTTTGTATAATAGTATGGAATAATGCTGTGGTGTACCGTAACTACCGAAA
CTACTCCCCTGCTCCCTGCCCTCCCCATTTTGACGGCATCCCAGAGCAGA
AATCGAAATGAGAGTAGGACAAGGGAGATTCTGCGCGAATTTTTTCGTCC
TGTAGTGGTTTTGGTCGCGGGTGGTCGTTTATGATGTCGATATTGATGTT
TTGATGTCGTTCCTGGTATTCGGCGTGTATTGTTGGGCCGAACCCGAGCT
AGCTGCGAAGTACCCGGTGGCCAATTCCGGCTGTTTCCTGTTATCAGACC
AATCAGTTTGGTCTGAAATACCGCCAAGAACGGAACAAATGCCCCCATTA
AAGAAAATGCTCCGGGGCGCTAAAAATCGCTAAAAAACGGAGCAAACGCC
CCGGAGCGCCTTGCTTAATTTTATTTTACTACAAAACGCCCCGGGTACGT
TGCAAACGCCCCGGGGCGTTCTTTTTCGCGCTTTTTCGAGGGGAAGGCCC
CGTGGGGCGAGCCCGACACAAGAAGGTGTGCGAAAAGGACCTGCTGCCGA
AGCAGAAAGGGACGCTTATTAATCGCAGCATGCAGTGGGCGGAATAGGAC
GGGTATATATCCGATATaTTTCTTCATCTTTTTCCATCAATTCAAGCTTC
TTGTTTTTACTTGTGTCTCGACCCGTGGACTCAACACGACCAGACCAACA
TTTTTTTTATTTCTGGAAACGCCCCGGGAGGCGCCTTCTGCCCTATTTTT
GTTCTGAAAAACGCCTCAGGTACAAGTTGCAAACGCCCCGGGGGCGCTAT
TTCGGAATTGTTTTATGGAACGCCCCGGAGGGGTGTTTACTCCGTTCCTT
ACGACCTATGTCTGAAAAAAATGAAGCTAGATTTTATTCTAATTCGAAAC
TTAATGCAGGTGAGACCTCAGATTTTCCAGTATGGGCCTGAAAAATGGAG
TCGCATTTTCAGGACGGCCGAAAAAGCTACCGGTATCAATACGATATTGC
ATGGGCAGCTATTAATATCACATTGGACCCCCCTGTTGTACGGTCAACCG
TTCCTACAGCCCCCAGGCGGCGGAAGGGTCTTGTCACTCTGCGTCTGTTT
TGGTTAAGTATAGTAAACAGTGCACTGTAAATTGTGTACTGTAAATAGTA
CTAGTATAACTATACTGTTAATGGTATACTGTAAATAGCATACTGTAAAC
AGCATACCACTGTAGATAGTATACTGTAAATAGTGTACTTTACCATACCG
CTGCAGGTGACGGTTTGGAGCTGAAAATTATTTTGAAGTCCCTTGAACGA
GGAAGTATACAGGTACACAGTAACCACCTCATTTGAGAGCAATAAAAACA
GATGAAAAGTTTCATCCCGGAAACCCCAGGGATTTCTTTAGTACCGAAAA
AAAGACCGGATACCAAGACGTTTAGGCGTGGGGGTATTGCCTGCAAGGAT
CGGAAGCAAGTGACTCCCCCGGTAGATGATTAAGGCCACTACACAGCCGC
GAGTCAAGCGTACCCGAACGGATCATTCGTATCAGTTCAGTCCTTGAGTC
GGTTGAGCACGGGCTTCAGTACAGTAATCCAGCTACGCCCAAGCTCTTAC
GGATACATTTTTCCGTCTCTGGATAACGTTTTGAGCCCCAGTGCACGGGA
GGGTCAAATGGCGGCGCCGGTAGGACGACTTATCATGGGGGGCAGGGGGG
GGGAGGATCGGCGAGGCGGCGTTGCTTCCGGCAAGACGGGTTACCAAAAT
GTCAATCCCTAATTTATTGTCAAGATAGAGATCTGACGGCGGTTGAAAGC
ATGAACGCGCCCCCATCGTTGATATCGACCTCGAAGGCTGCGAGCACCCG
CTCATGCCCACTCTCCCCTCCCGGTTCTGCCGCCCCGCCCGCCTTCGCGC
GTCCGTACCGTGGAGCAGTCCCCTGCCGAAGAGAAGGACTGCGCCGGCTT
TTCTCCTGTTCGTCTCGACTTCTGCCCCCTTGACCACCACGGGCAGTGGC
TTTGCTGTGGTGTCGTCTGCCGAAGACCCGTCCTTCGTAAGGGTATCTAG
CGGCAGCAGCCGCCACGATAGCGGCACCATCGGCAACGTGGTTAGGCTAG
GCGACCGTTGTCGCCAAGGAGGACGCCCCCCCTCTCCCGACGAGGGCGGC
TCTTTTTTCTGCGGGGCTCGAGGCAGGGATGACGCCACCGTGTTCGAGAG
AAAATGCGGCTCGACACTCCAACGTCGATCTCATGAAGGAGGCGGCGTGC
TCACCGCGATGAAAGCGTTCGTGTCTCATCGCCCGCCCTTGCCCCGGGCC
GTTGCCACCACCGGCGGTTCTTTTCTAGGCCGCCGGGTGGCGGAGCATTT
TTCTCGCTCGAGCGGCGGAGATACCGGTCGGGGTCCGGGATTCATGCGCG
ATAGAGCGATTCACGGCGATTGGGGCTCGAGGATCAAGTTCATAGGCGAC
GGGGTGAGTGGAGAAGACGTGACATCGTCGCGGTGCGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig129:248876..255764+

>mRNA_F-serratus_M_contig129.2137.1 ID=mRNA_F-serratus_M_contig129.2137.1|Name=mRNA_F-serratus_M_contig129.2137.1|organism=Fucus serratus male|type=CDS|length=1182bp|location=Sequence derived from alignment at F-serratus_M_contig129:248876..255764+ (Fucus serratus male)
ATGCGGAGGCGACGACAAAGATGCGGAGGCGACGACAAAGTCCCCTGCCG
AAGAGAAGGACTGCGCCGGCTTTTCTCCTGTTCGTCTCGACTTCTGCCCC
CTTGACCACCACGGGCAGTGGCTTTGCTGTGGTGTCGTCTGCCGAAGACC
CGTCCTTCGTAAGGGTATCTAGCGGCAGCAGCCGCCACGATAGCGGCACC
ATCGGCAACGTGGTTAGGCTAGGCGACCGTTGTCGCCAAGGAGGACGCCC
CCCCTCTCCCGACGAGGGCGGCTCTTTTTTCTGCGGGGCTCGAGGCAGGG
ATGACGCCACCGTGTTCGAGAGAAAATGCGGCTCGACACTCCAACGTCGA
TCTCATGAAGGAGGCGGCGTGCTCACCGCGATGAAAGCGTTCGTGTCTCA
TCGCCCGCCCTTGCCCCGGGCCGTTGCCACCACCGGCGGTTCTTTTCTAG
GCCGCCGGGTGGCGGAGCATTTTTCTCGCTCGAGCGGCGGAGATACCGGT
CGGGGTCCGGGATTCATGCGCGATAGAGCGATTCACGGCGATTGGGGCTC
GAGGATCAAGTTCATAGGCGACGGGGTGAGTGGAGAAGACGTGACATCGT
CGCGGTGCGCGTCCCCTGCCGAAGAGAAGGACTGCGCCGGCTTTTCTCCT
GTTCGTCTCGACTTCTGCCCCCTTGACCACCACGGGCAGTGGCTTTGCTG
TGGTGTCGTCTGCCGAAGACCCGTCCTTCGTAAGGGTATCTAGCGGCAGC
AGCCGCCACGATAGCGGCACCATCGGCAACGTGGTTAGGCTAGGCGACCG
TTGTCGCCAAGGAGGACGCCCCCCCTCTCCCGACGAGGGCGGCTCTTTTT
TCTGCGGGGCTCGAGGCAGGGATGACGCCACCGTGTTCGAGAGAAAATGC
GGCTCGACACTCCAACGTCGATCTCATGAAGGAGGCGGCGTGCTCACCGC
GATGAAAGCGTTCGTGTCTCATCGCCCGCCCTTGCCCCGGGCCGTTGCCA
CCACCGGCGGTTCTTTTCTAGGCCGCCGGGTGGCGGAGCATTTTTCTCGC
TCGAGCGGCGGAGATACCGGTCGGGGTCCGGGATTCATGCGCGATAGAGC
GATTCACGGCGATTGGGGCTCGAGGATCAAGTTCATAGGCGACGGGGTGA
GTGGAGAAGACGTGACATCGTCGCGGTGCGCG
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