mRNA_F-serratus_M_contig1286.2106.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1286.2106.1 vs. uniprot
Match: A0A6H5KHD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD4_9PHAE) HSP 1 Score: 378 bits (970), Expect = 8.800e-115 Identity = 208/322 (64.60%), Postives = 229/322 (71.12%), Query Frame = 2
Query: 38 GAVGSRAFVDSVVGQLREDGNNPSTECPICFELPMVAPALTTCAHLLCKACLQDCLRRETCCPVCRSPMQESEIIDFPDSNGIKKGAQKTSGEMEEDERAEARSTPLPMSIFGATASSATSGGGVQVRGGCHSKGG----------WVGSTKLERLELELREMEKKRAGAKAVVFSQWTNMLDLAERSLTRGGWTFRRLDGSMSQQKRESALESFSSDGSVTVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEDQAIDRIHRLGQLNDVSVKRFVVADTVEDKMLALQEVKGRMAKSALASGSLGESQKLRVEDLVQFFK 973
G VGS AFVDSVV QLREDG ECP+C E PM +PALT CAHL+C CL+DCLRRE CCPVCRSPM ++II+ S K A R P W+GSTKL RLELELREM KK GAKAVVFSQWT+MLDLAE S+ RGGWTFRRLDG+MSQQ+RESAL+ F++D SVTVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVE+QAIDRIHRLGQLN+VSVKRFVV+ TVEDKMLALQEVKGRMAK+ALA+GS ESQKLRVEDL+QFFK
Sbjct: 1307 GGVGSLAFVDSVVDQLREDGEMAKEECPVCLEEPMSSPALTPCAHLICLHCLRDCLRREACCPVCRSPMTTADIIEVSASQPTGKAV------------AAPRKPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWIGSTKLARLELELREMRKKTPGAKAVVFSQWTHMLDLAEASIARGGWTFRRLDGAMSQQQRESALKGFATDESVTVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEEQAIDRIHRLGQLNEVSVKRFVVSGTVEDKMLALQEVKGRMAKNALAAGSANESQKLRVEDLIQFFK 1616
BLAST of mRNA_F-serratus_M_contig1286.2106.1 vs. uniprot
Match: A0A6V1XFX6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1XFX6_HETAK) HSP 1 Score: 207 bits (528), Expect = 7.600e-62 Identity = 111/177 (62.71%), Postives = 133/177 (75.14%), Query Frame = 2
Query: 446 WVGSTKLERLELELREMEKKRAGA-KAVVFSQWTNMLDLAERSLTRGGWTFRRLDGSMSQQKRESALESFSSDGSVTVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEDQAIDRIHRLGQLNDVSVKRFVVADTVEDKMLALQEVKGRMAKSALASGSLGESQKLRVEDLVQFFK 973
W GS KL+ LE EL M + A KAVVFSQWT MLDL E L R GW RLDGSMSQQ+RE ALE F+++ + VML+SLKAGGVGLNLT AS V L+DPWWNPA+E QAIDR+HRLGQ V V+R VV DTVE K+LALQE K ++A++AL SG L E+ KL++ED++ FFK
Sbjct: 17 WQGSAKLDCLERELGAMRRGGDPARKAVVFSQWTYMLDLVEVLLRRMGWRHTRLDGSMSQQQREDALERFATETDIPVMLLSLKAGGVGLNLTQASLVFLIDPWWNPAIEAQAIDRVHRLGQTRAVQVRRLVVRDTVEGKLLALQERKKQLAQTALQSGKLEEASKLKLEDMIDFFK 193
BLAST of mRNA_F-serratus_M_contig1286.2106.1 vs. uniprot
Match: A0A425DCE9_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DCE9_9STRA) HSP 1 Score: 217 bits (552), Expect = 3.600e-61 Identity = 127/308 (41.23%), Postives = 180/308 (58.44%), Query Frame = 2
Query: 59 FVDSVVGQLREDGNNPSTECPICFELPMVAPALTTCAHLLCKACLQDCLRRETCCPVCRSPMQESEII--DFPDSNGIKKGAQKTSGEMEEDERAEARSTPLPMSIFGATASSATSGGGVQVRGGCHSKGGWVGSTKLERLELELREMEKKRAGAKAVVFSQWTNMLDLAERSLTRGGWTFRRLDGSMSQQKRESALESFSSDGSVTVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEDQAIDRIHRLGQLNDVSVKRFVVADTVEDKMLALQEVKGRMAKSALASGSLGESQ--KLRVEDLVQFF 970
++ + + +++++G ECP+C ++P VAP LT CAHL+C AC+ L CCPVCR+ + ++I D PD T+G+ D+ + + PL W GS KL +L ++L +E AG K VVFSQWT+MLDL + +L + G+T R DGS+ Q RE L F++ V V+++SLKAGGVGLNLTAAS VI++DPWWNP +EDQAIDR+HRLGQ DV VK+++V TVED +L LQ+ K +A + LA+ G +L + DL+ FF
Sbjct: 288 YIKNRILEIQDEGLE-CQECPVCLDVP-VAPVLTPCAHLMCHACVVAFLSNGGCCPVCRAHISPDQLIRVDPPDKP--------TTGDNPPDDD-DNGTAPL-----------------------------WAGSAKLTQLVVDLNSIE---AGRKVVVFSQWTHMLDLIQSTLHQHGYTHCRFDGSLKQDDREKVLHRFNTQPDVQVLVISLKAGGVGLNLTAASVVIMMDPWWNPGIEDQAIDRVHRLGQTRDVLVKKYIVEGTVEDMILTLQQRKATLASTVLATSKAGADNDWRLSLADLLTFF 552
BLAST of mRNA_F-serratus_M_contig1286.2106.1 vs. uniprot
Match: A0A485LGA6_9STRA (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LGA6_9STRA) HSP 1 Score: 223 bits (569), Expect = 4.510e-61 Identity = 124/315 (39.37%), Postives = 180/315 (57.14%), Query Frame = 2
Query: 41 AVGSRAFVDSVVGQLREDGNNPSTECPICFELPMVAPALTTCAHLLCKACLQDCLRRE---TCCPVCRSPMQESEIIDFPDSNGIKKGAQKTSGEMEEDERAEARSTPLPMSIFGATASSATSGGGVQVRGGCHSKGGWVGSTKLERLELELREMEKKRAGAKAVVFSQWTNMLDLAERSLTRGGWTFRRLDGSMSQQKRESALESFSSDGSVTVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEDQAIDRIHRLGQLNDVSVKRFVVADTVEDKMLALQEVKGRMAKSALASGSLGESQ--KLRVEDLVQFF 970
A + ++ + + +++E+G + ECP+C ++P VAP LT CAHLLCK C+ C + CPVCR+ + +I + G + SG GW GS KL +L ++L+ ++ R K +VFSQWT+MLDL E +L + G++ R DGS+ Q+ RE L F++D +V V+++SLKAGGVGLNLTAAS VI++DPWWNP +EDQAIDR+HR+GQ DV VK+++V DTVED +L LQ+ K +A + LAS G +L + DL++FF
Sbjct: 716 ATDEQTYIKNRILEIQEEGLD-CQECPVCLDVP-VAPVLTPCAHLLCKNCILTCFDNHGEASGCPVCRAAVSADALIAIEPPEKVSPGKDEASG-------------------------------------------GWAGSAKLNQLVVDLKSIDATR---KVIVFSQWTHMLDLVESTLVQHGYSHARFDGSLKQEDRERVLNRFNADPAVRVLVISLKAGGVGLNLTAASVVIMMDPWWNPGIEDQAIDRVHRIGQTRDVIVKKYIVQDTVEDMILQLQQRKATLASTVLASAKAGAEHDGRLSLVDLLKFF 982
BLAST of mRNA_F-serratus_M_contig1286.2106.1 vs. uniprot
Match: W4GNE1_9STRA (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=15 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GNE1_9STRA) HSP 1 Score: 217 bits (552), Expect = 1.240e-58 Identity = 127/308 (41.23%), Postives = 180/308 (58.44%), Query Frame = 2
Query: 59 FVDSVVGQLREDGNNPSTECPICFELPMVAPALTTCAHLLCKACLQDCLRRETCCPVCRSPMQESEII--DFPDSNGIKKGAQKTSGEMEEDERAEARSTPLPMSIFGATASSATSGGGVQVRGGCHSKGGWVGSTKLERLELELREMEKKRAGAKAVVFSQWTNMLDLAERSLTRGGWTFRRLDGSMSQQKRESALESFSSDGSVTVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEDQAIDRIHRLGQLNDVSVKRFVVADTVEDKMLALQEVKGRMAKSALASGSLGESQ--KLRVEDLVQFF 970
++ + + +++++G ECP+C ++P VAP LT CAHL+C AC+ L CCPVCR+ + ++I D PD T+G+ D+ + + PL W GS KL +L ++L +E AG K VVFSQWT+MLDL + +L + G+T R DGS+ Q RE L F++ V V+++SLKAGGVGLNLTAAS VI++DPWWNP +EDQAIDR+HRLGQ DV VK+++V TVED +L LQ+ K +A + LA+ G +L + DL+ FF
Sbjct: 764 YIKNRILEIQDEGLE-CQECPVCLDVP-VAPVLTPCAHLMCHACVVAFLSNGGCCPVCRAHISPDQLIRVDPPDKP--------TTGDNPPDDD-DNGTAPL-----------------------------WAGSAKLTQLVVDLNSIE---AGRKVVVFSQWTHMLDLIQSTLHQHGYTHCRFDGSLKQDDREKVLHRFNTQPDVQVLVISLKAGGVGLNLTAASVVIMMDPWWNPGIEDQAIDRVHRLGQTRDVLVKKYIVEGTVEDMILTLQQRKATLASTVLATSKAGADNDWRLSLADLLTFF 1028
BLAST of mRNA_F-serratus_M_contig1286.2106.1 vs. uniprot
Match: A0A2P4X6Z0_9STRA (DNA repair protein RAD5, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin, p n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X6Z0_9STRA) HSP 1 Score: 203 bits (517), Expect = 1.610e-58 Identity = 128/317 (40.38%), Postives = 181/317 (57.10%), Query Frame = 2
Query: 56 AFVDSVVGQLREDGNNPSTECPICFELPMVAPALTTCAHLLCKACLQDCLRR--ETCCPVCRSPMQESEIIDFPDSNGIKKGAQKTSGEMEEDERAEARSTPLPMSIFGATASSATSGGGVQVRGGCHSKGGWVGSTKLERLELELREMEKKRAGA------KAVVFSQWTNMLDLAERSLTRGGWTFRRLDGSMSQQKRESALESFSSDGSVTVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEDQAIDRIHRLGQLNDVSVKRFVVADTVEDKMLALQEVKGRMAKSALASGSLGE---SQKLRVEDLVQFFK 973
+++ SV+ Q+ EDG S ECPIC + P A LT CAH+LC CL+D L E CPVCR+ + +++ P + TS + D +A + + T + +G S KL++L +L+ ++ + A K VVFSQWT+MLD+ LTR ++ +G ++Q+ RE L F+ D +V V+++SLKAGGVGLNLT AS VILLDPWWNP VE+QAIDR+HRLGQ DV VKR+VV DTVED +L LQ+ K ++AK L + S++L ++DL FF+
Sbjct: 30 SYIQSVIAQV-EDGLE-SQECPICLDPPQNA-VLTPCAHVLCDQCLRDSLANDPENGCPVCRTVVDMAKVFKLPPPS--------TSKVQDRDSKASGPTNNTLVEEIKCTTADDDTG---------------FESAKLQQLLRDLKAIKVENNNASPEQKRKVVVFSQWTSMLDMVSELLTRNSFSHCTFNGGLNQEARERVLSKFAKDPNVEVLVISLKAGGVGLNLTCASVVILLDPWWNPGVEEQAIDRVHRLGQTQDVIVKRYVVNDTVEDMILQLQQRKEKLAKHVLVVSKAHDERRSERLNLDDLRSFFR 320
BLAST of mRNA_F-serratus_M_contig1286.2106.1 vs. uniprot
Match: A0A024UTG2_9STRA (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UTG2_9STRA) HSP 1 Score: 215 bits (548), Expect = 3.640e-58 Identity = 123/309 (39.81%), Postives = 180/309 (58.25%), Query Frame = 2
Query: 56 AFVDSVVGQLREDGNNPSTECPICFELPMVAPALTTCAHLLCKACLQDCLRR--ETCCPVCRSPMQESEIIDFPDSNGIKKGAQKTSGEMEEDERAEARSTPLPMSIFGATASSATSGGGVQVRGGCHSKGGWVGSTKLERLELELREMEKKRAGAKAVVFSQWTNMLDLAERSLTRGGWTFRRLDGSMSQQKRESALESFSSDGSVTVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEDQAIDRIHRLGQLNDVSVKRFVVADTVEDKMLALQEVKGRMAKSALASGSLGESQ--KLRVEDLVQFF 970
A++ + + +++E+G + ECP+C ++P AP LT C HL+CK C+ L CCPVCR+ + +++ P + ++AS+ ++ G W GS KL++L +L+ +E AG K VVFSQWT+MLDL E +L + G++ R DGS+ Q RE L F+S+ V V+++SLKAGGVGLNLTAAS VI++DPWWNP +EDQAIDR+HRLGQ DV VK+++V DTVE +L LQ+ K +A + LA+ G +L + DL++FF
Sbjct: 730 AYIKNRILEIQEEGLD-CQECPVCLDVP-TAPVLTPCGHLMCKECVLGFLNAGATACCPVCRADVTPDQLVPIDP----------------------------PEKLLSSSASTD------------NAHGMWAGSAKLKQLVSDLKSIE---AGRKVVVFSQWTHMLDLVETTLQQHGYSHCRFDGSLKQDDRERVLHRFNSNPDVQVLVISLKAGGVGLNLTAASVVIMMDPWWNPGIEDQAIDRVHRLGQTRDVLVKKYIVEDTVEGMILQLQQRKATLASTVLATSKSGAENDGRLSLADLLKFF 993
BLAST of mRNA_F-serratus_M_contig1286.2106.1 vs. uniprot
Match: A0A453AHJ8_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453AHJ8_AEGTS) HSP 1 Score: 202 bits (513), Expect = 8.110e-58 Identity = 126/317 (39.75%), Postives = 165/317 (52.05%), Query Frame = 2
Query: 29 GKRGAVGSRAFVDSVVGQLREDGNNPSTECPICFELPMVAPALTTCAHLLCKACLQDCLRRET--CCPVCRSPMQESEIIDFPDSNGIKKGAQKTSGEMEEDERAEARSTPLPMSIFGATASSATSGGGVQVRGGCHSKGGWVGSTKLERLELELREMEKKRAGAKAVVFSQWTNMLDLAERSLTRGGWTFRRLDGSMSQQKRESALESFSSDGSVTVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEDQAIDRIHRLGQLNDVSVKRFVVADTVEDKMLALQEVKGRMAKSALASGSLGESQKLRVEDLVQFFK 973
G R V RAFV+ VV ++R+ + ECPIC E P +T CAH +C+ CL C CP+CRSP+ ++++I P VQ R +K W S K+ RL L ++ KK G K++VFSQ+T+ DL E L + G F R DG ++Q+ RE L FS V+L+SLKAGGVGLNLTAAS V L+DPWWNPAVE+QAI RIHR+GQ V V+RF+V DTVE++M +Q K RM AL + S R+E+L FK
Sbjct: 67 GCRAIVPPRAFVEDVVEEIRQ---GTAAECPICLESTSDDPVITPCAHRMCRECLLSCWSTPAGGACPICRSPITKADLIMLP----------------------------------------------VQCRYEVDAKNNWKDSCKVVRLLATLEDLGKK--GEKSIVFSQFTSFFDLLEIPLNQKGIKFLRFDGKVTQKHREKVLNEFSQSKDKLVLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRAVHVRRFIVKDTVEERMQQVQARKQRMIAGALTDEEVRSS---RIEELKMLFK 329
BLAST of mRNA_F-serratus_M_contig1286.2106.1 vs. uniprot
Match: A0A6G0XYJ5_9STRA (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XYJ5_9STRA) HSP 1 Score: 211 bits (537), Expect = 1.030e-56 Identity = 121/311 (38.91%), Postives = 181/311 (58.20%), Query Frame = 2
Query: 53 RAFVDSVVGQLREDGNNPSTECPICFELPMVAPALTTCAHLLCKACLQDCLR---RETCCPVCRSPMQESEIIDFPDSNGIKKGAQKTSGEMEEDERAEARSTPLPMSIFGATASSATSGGGVQVRGGCHSKGGWVGSTKLERLELELREMEKKRAGAKAVVFSQWTNMLDLAERSLTRGGWTFRRLDGSMSQQKRESALESFSSDGSVTVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEDQAIDRIHRLGQLNDVSVKRFVVADTVEDKMLALQEVKGRMAKSALASGSLGESQ--KLRVEDLVQFF 970
++++ + + +++E+G + ECP+C E+P +P LT CAHLLCK+C+ L +E CPVCR+ + ++I E P P + W GS+KL +L +L+ +EK G K VVFSQW++MLDL E +L++ G++ R DG++ Q+ RE L F++D ++ V+++SLKAGGVGLNLTAAS VI+LDPWWNP +EDQAIDR+HRLGQ DV VK+++V DTVE+ +L LQ+ K +A + LA+ +L + DL++FF
Sbjct: 712 QSYIKNRILEIQEEGLD-CQECPVCLEVPE-SPVLTPCAHLLCKSCVVTFLESNGQEAGCPVCRADVSPDQLIAI-----------------------EPPEKPTPTT----------------------QDESWAGSSKLNQLVKDLKSIEK---GRKVVVFSQWSHMLDLVESTLSKHGYSCLRFDGTLKQEDRERVLLRFNNDPTIQVLVISLKAGGVGLNLTAASVVIMLDPWWNPGIEDQAIDRVHRLGQTRDVMVKKYIVQDTVEEMILQLQQRKATLASTVLATAKSAADNDGRLSLADLLKFF 972
BLAST of mRNA_F-serratus_M_contig1286.2106.1 vs. uniprot
Match: A0A1D6Q2S9_MAIZE (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 n=8 Tax=Zea mays TaxID=4577 RepID=A0A1D6Q2S9_MAIZE) HSP 1 Score: 200 bits (508), Expect = 1.390e-56 Identity = 126/323 (39.01%), Postives = 172/323 (53.25%), Query Frame = 2
Query: 26 RGKRGAVG------SRAFVDSVVGQLREDGNNPSTECPICFELPMVAPALTTCAHLLCKACLQDCLRRETC--CPVCRSPMQESEIIDFPDSNGIKKGAQKTSGEMEEDERAEARSTPLPMSIFGATASSATSGGGVQVRGGCHSKGGWVGSTKLERLELELREMEKKRAGAKAVVFSQWTNMLDLAERSLTRGGWTFRRLDGSMSQQKRESALESFSSDGSVTVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEDQAIDRIHRLGQLNDVSVKRFVVADTVEDKMLALQEVKGRMAKSALASGSLGESQKLRVEDLVQFF 970
RG GAV SRA+++ VV +L++D ECPIC E A LT CAH LC+ CL R T CPVCR M + ++I P N + +K WV S+K+ L EL + +GAK++VFSQWT LDL + L+R ++F RLDG+++ Q+RE ++ FS D + V+L+SLKAGGVG+NLTAAS ++DPWWNPAVE+QA+ RIHR+GQ VS++RF+V TVE++M A+Q K RM AL E + R+E+L F
Sbjct: 104 RGGNGAVNGDSCIPSRAYIEQVVQELQKDEG----ECPICLEAFEDA-VLTPCAHRLCRECLLSSWRSATAGLCPVCRMSMSKQDLITAPTDNRFQIDVEKN----------------------------------------------WVESSKISALLQELEALRS--SGAKSIVFSQWTAFLDLLQIPLSRNNFSFARLDGTLNLQQREKVIKEFSEDKGILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKTVSIRRFIVKGTVEERMEAVQARKQRMISGALTDQ---EVRTARIEELKMLF 370 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1286.2106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1286.2106.1 >prot_F-serratus_M_contig1286.2106.1 ID=prot_F-serratus_M_contig1286.2106.1|Name=mRNA_F-serratus_M_contig1286.2106.1|organism=Fucus serratus male|type=polypeptide|length=279bp MVAPALTTCAHLLCKACLQDCLRRETCCPVCRSPMQESEIIDFPDSNGIKback to top mRNA from alignment at F-serratus_M_contig1286:14183..19871- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1286.2106.1 ID=mRNA_F-serratus_M_contig1286.2106.1|Name=mRNA_F-serratus_M_contig1286.2106.1|organism=Fucus serratus male|type=mRNA|length=5689bp|location=Sequence derived from alignment at F-serratus_M_contig1286:14183..19871- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1286:14183..19871- >mRNA_F-serratus_M_contig1286.2106.1 ID=mRNA_F-serratus_M_contig1286.2106.1|Name=mRNA_F-serratus_M_contig1286.2106.1|organism=Fucus serratus male|type=CDS|length=1674bp|location=Sequence derived from alignment at F-serratus_M_contig1286:14183..19871- (Fucus serratus male)back to top |