mRNA_F-serratus_M_contig1285.2103.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1285.2103.1
Unique NamemRNA_F-serratus_M_contig1285.2103.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1285.2103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1285contigF-serratus_M_contig1285:108620..108837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size179
Cds size108
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1285.2103.1prot_F-serratus_M_contig1285.2103.1Fucus serratus malepolypeptideF-serratus_M_contig1285 108654..108800 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929224.7016094-UTR-F-serratus_M_contig1285:108619..1086531622929224.7016094-UTR-F-serratus_M_contig1285:108619..108653Fucus serratus maleUTRF-serratus_M_contig1285 108620..108653 -
1690962757.457814-UTR-F-serratus_M_contig1285:108619..1086531690962757.457814-UTR-F-serratus_M_contig1285:108619..108653Fucus serratus maleUTRF-serratus_M_contig1285 108620..108653 -
1622929224.7436094-UTR-F-serratus_M_contig1285:108800..1088371622929224.7436094-UTR-F-serratus_M_contig1285:108800..108837Fucus serratus maleUTRF-serratus_M_contig1285 108801..108837 -
1690962757.4887974-UTR-F-serratus_M_contig1285:108800..1088371690962757.4887974-UTR-F-serratus_M_contig1285:108800..108837Fucus serratus maleUTRF-serratus_M_contig1285 108801..108837 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929224.7174902-CDS-F-serratus_M_contig1285:108653..1086961622929224.7174902-CDS-F-serratus_M_contig1285:108653..108696Fucus serratus maleCDSF-serratus_M_contig1285 108654..108696 -
1690962757.467686-CDS-F-serratus_M_contig1285:108653..1086961690962757.467686-CDS-F-serratus_M_contig1285:108653..108696Fucus serratus maleCDSF-serratus_M_contig1285 108654..108696 -
1622929224.730445-CDS-F-serratus_M_contig1285:108735..1088001622929224.730445-CDS-F-serratus_M_contig1285:108735..108800Fucus serratus maleCDSF-serratus_M_contig1285 108736..108800 -
1690962757.4762313-CDS-F-serratus_M_contig1285:108735..1088001690962757.4762313-CDS-F-serratus_M_contig1285:108735..108800Fucus serratus maleCDSF-serratus_M_contig1285 108736..108800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1285.2103.1

>prot_F-serratus_M_contig1285.2103.1 ID=prot_F-serratus_M_contig1285.2103.1|Name=mRNA_F-serratus_M_contig1285.2103.1|organism=Fucus serratus male|type=polypeptide|length=36bp
MFSMGRKTTASKCCVHNKPFQTTKTINRGCMSFMV*
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mRNA from alignment at F-serratus_M_contig1285:108620..108837-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1285.2103.1 ID=mRNA_F-serratus_M_contig1285.2103.1|Name=mRNA_F-serratus_M_contig1285.2103.1|organism=Fucus serratus male|type=mRNA|length=218bp|location=Sequence derived from alignment at F-serratus_M_contig1285:108620..108837- (Fucus serratus male)
GATTCAAGCGTTCGCCCAAAAGTTTGAGGAATACAAAATGTTCAGCATGG
GCCGCAAAACCACCGCCTCAAAGTGCTGCGTTCACAACAAGCCGTTCCAA
ACGCACTGCCCCTGTCGCAGGTGAGAGTGTGCTGCAAAAAGTACGAAAAC
AATAAATCGGGGATGTATGTCGTTCATGGTCTAGTGCAACCTTTCGTTTT
GATGCCTGGTGGAAACTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1285:108620..108837-

>mRNA_F-serratus_M_contig1285.2103.1 ID=mRNA_F-serratus_M_contig1285.2103.1|Name=mRNA_F-serratus_M_contig1285.2103.1|organism=Fucus serratus male|type=CDS|length=216bp|location=Sequence derived from alignment at F-serratus_M_contig1285:108620..108837- (Fucus serratus male)
ATGTTCAGCATGGGCCGCAAAACCACCGCCTCAAAGTGCTGCGTTCACAA
CAAGCCGTTCCAAACATGTTCAGCATGGGCCGCAAAACCACCGCCTCAAA
GTGCTGCGTTCACAACAAGCCGTTCCAAACTACGAAAACAATAAATCGGG
GATGTATGTCGTTCATGGTCTAGTACGAAAACAATAAATCGGGGATGTAT
GTCGTTCATGGTCTAG
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