mRNA_F-serratus_M_contig1282.2095.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1282.2095.1
Unique NamemRNA_F-serratus_M_contig1282.2095.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1282.2095.1 vs. uniprot
Match: A0A6H5JY30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY30_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 4.710e-29
Identity = 62/113 (54.87%), Postives = 76/113 (67.26%), Query Frame = 1
Query:  202 LVFSMTNFYHTRDGKPGQLIPWLQDVQLAEPYRETTVKVENARDGHSYEWEVRQVGQPDN--VIASATGAEATIIFPKLEWNMVTLQEKDASGNVTREYSENVIVKYVRREIR 534
            L F   NFYH RDGKP Q  PWLQDV+L EP+RETT+ V + RDG+ Y WEVR  G  DN  V ASA GA   I    L+ N++TL+E ++ G + R+  E V+VKYVRREIR
Sbjct:   60 LSFQALNFYHIRDGKPAQDYPWLQDVKLIEPHRETTMSVSSPRDGYDYIWEVRS-GDTDNTKVRASARGAVVLITLTILDDNVITLKEVNSDGEIMRQLDELVMVKYVRREIR 171          
BLAST of mRNA_F-serratus_M_contig1282.2095.1 vs. uniprot
Match: A0A6H5JRR4_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRR4_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.540e-27
Identity = 61/112 (54.46%), Postives = 76/112 (67.86%), Query Frame = 1
Query:  202 LVFSMTNFYHTRDGKPGQLIPWLQDVQLAEPYRETTVKVENARDGHSYEWEVRQVGQPDNVI-ASATGAEATIIFPKLEWNMVTLQEKDASGNVTREYSENVIVKYVRREIR 534
            L F   NFYH RDGKP Q  PWLQDV+L EP+RETT+ V + RDG+ Y WEVR     D  + ASA GAEA I    L+ N++TL+E ++ G + R+  E V+VKYVRREIR
Sbjct:  127 LAFQALNFYHIRDGKPAQDYPWLQDVKLIEPHRETTLTVSSPRDGYDYIWEVRSGDTDDTEVRASARGAEALITLTILDDNVITLKEVNSDGEIMRQLDELVMVKYVRREIR 238          
BLAST of mRNA_F-serratus_M_contig1282.2095.1 vs. uniprot
Match: D8LC42_ECTSI (TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC42_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 2.510e-26
Identity = 65/142 (45.77%), Postives = 85/142 (59.86%), Query Frame = 1
Query:  163 RQHGDVKSSLDEDLVFSMTNFYHTRDGKPGQLIPWLQDVQLAEPYRETTVKVENARDGHSYEWEV-----------------RQVGQPDNVIASATGAEATIIFPKLEWNMVTLQEKDA-SGNVTREYSENVIVKYVRREIR 534
            +Q GDV   L     F+  NFYH RDGKP Q  PWL+DV+L EP+RETT+ VE  RDG  Y W+V                  + G  + V+A+A+GAEA ++F  L  N V+L+E ++ +G VTR   E V+VKYVRREIR
Sbjct:  124 QQQGDVSPPLS----FTALNFYHVRDGKPAQDYPWLKDVKLIEPHRETTLDVETPRDGFEYRWKVLLGAPVSITDSAPASSFEEEGVTEEVVATASGAEAVVVFTHLGENSVSLEEVNSDTGVVTRRLQEKVMVKYVRREIR 261          
BLAST of mRNA_F-serratus_M_contig1282.2095.1 vs. uniprot
Match: D8LC28_ECTSI (TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC28_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 3.340e-26
Identity = 64/133 (48.12%), Postives = 80/133 (60.15%), Query Frame = 1
Query:  172 GDVKSSLDED--LVFSMTNFYHTRDGKPGQLIPWLQDVQLAEPYRETTVKVENARDGHSYEWEVRQVGQPDNVIAS---------ATGAEATIIFPKLEWNMVTLQEKD-ASGNVTREYSENVIVKYVRREIR 534
            G   SS + D  L F+  NFYH RDGKPGQ  PWL+D +L EP+RETT+ VE  R+G  Y W+VR     D+  +S         A GA A ++   LE NM+TL+E + A G V R   E V+VKYVRREIR
Sbjct:  100 GGASSSGESDQALAFTALNFYHVRDGKPGQDYPWLKDFKLVEPHRETTLAVEAPREGFEYRWDVRPTCTGDSCTSSSGGESSPIQAAGAVAEVVLTSLEENMITLEEVNVADGKVVRRLEETVMVKYVRREIR 232          
BLAST of mRNA_F-serratus_M_contig1282.2095.1 vs. uniprot
Match: D8LC46_ECTSI (Tyrosinase_Cu-bd domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LC46_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 2.990e-25
Identity = 59/127 (46.46%), Postives = 74/127 (58.27%), Query Frame = 1
Query:  157 AIRQHGDVKSSLDEDLVFSMTNFYHTRDGKPGQLIPWLQDVQLAEPYRETTVKVENARDGHSYEWEVRQVGQPDNVIAS-ATGAEATIIFPKLEWNMVTLQEKDASGNVTREYSENVIVKYVRREIR 534
            A  + G +       L F  TNFY  RDGKP Q  PWL+DV+L EP+RETT  V + RDG  Y W V      +  + + ATG E+T++   L+ N V L+E DA G V R   E V+VKYVRREIR
Sbjct:  151 AAAEDGQLSGEEIPRLSFEATNFYQLRDGKPAQDYPWLKDVKLIEPHRETTFTVSSPRDGFDYRWRVFAGSAAEGELCTEATGPESTVVLTTLDENEVVLEEVDADGTVVRRRQEKVMVKYVRREIR 277          
BLAST of mRNA_F-serratus_M_contig1282.2095.1 vs. uniprot
Match: A0A6H5J676_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J676_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 4.790e-24
Identity = 57/114 (50.00%), Postives = 74/114 (64.91%), Query Frame = 1
Query:  202 LVFSMTNFYHTRDGKPGQLIPWLQDVQLAEPYRETTVKVENARDGHSYEWEVRQVGQPDNVIASATGAEATIIFPK--LEWNMVTLQEKD-ASGNVTREYSENVIVKYVRREIR 534
            L F   NFYH RDGKP    PWL+DV+L EP+RETT+ V++ R+G  Y W +R       V  +A+GAEA ++     LE N+VTL+E + A+G V R   E V+VKYVRREIR
Sbjct:  106 LAFHARNFYHVRDGKPASDYPWLRDVKLVEPHRETTLSVDDPREGFEYRWLIRGGSSASKVHTAASGAEAVVVLEAKHLEENLVTLEEVEIATGAVARRLDEFVMVKYVRREIR 219          
BLAST of mRNA_F-serratus_M_contig1282.2095.1 vs. uniprot
Match: A0A6H5J7R8_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R8_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 9.130e-22
Identity = 60/144 (41.67%), Postives = 81/144 (56.25%), Query Frame = 1
Query:  115 SRGSNNLAEKLPKGAIRQHGDVKSSLDE--DLVFSMTNFYHTRDGKPGQLIPWLQDVQLAEPYRETTVKVENARDGHSYEWEVRQV-GQPDNVIASATGAEATIIFPKLEWNMVTLQEKDA-SGNVTREYSENVIVKYVRREIR 534
            S GS ++       A++ H        E   L F  TNFYH RDGKP    PWL++V+L EP+RETT  V + RDG  Y W VR      D++ A A+GAE  +I   L+  ++ L+E +  +G V R   E V+VKYVRRE+R
Sbjct:   98 SSGSGSVKANDTPAAVKVHHSRPGVATELAPLSFEATNFYHIRDGKPALDYPWLKEVKLIEPHRETTFTVSSPRDGFEYRWTVRGADADKDDLRAEASGAETVMILTVLDDTIIDLEEVNTETGVVARRLEEKVMVKYVRRELR 241          
BLAST of mRNA_F-serratus_M_contig1282.2095.1 vs. uniprot
Match: D7G9A4_ECTSI (Ortho-aminophenol oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A4_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 5.030e-18
Identity = 47/93 (50.54%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  262 PWLQDVQLAEPYRETTVKVENARDGHSYEWEVRQVGQPD--NVIASATGAEATIIFPKLEWNMVTLQEKDASGNVTREYSENVIVKYVRREIR 534
            PWL+DV+L EP+RET + V + RDG+ Y WEVR  G+ D  ++IA+A+GAEA +    L+ NM+T++E    G + R+  E V+VKYVRREIR
Sbjct:  111 PWLRDVKLIEPHRETILAVSSPRDGYDYIWEVR-AGETDEADLIATASGAEAVVTLTVLDENMITVKEVHPDGEIVRQLDEMVMVKYVRREIR 202          
BLAST of mRNA_F-serratus_M_contig1282.2095.1 vs. uniprot
Match: A0A7S3XQ55_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ55_HETAK)

HSP 1 Score: 55.8 bits (133), Expect = 1.060e-6
Identity = 37/105 (35.24%), Postives = 54/105 (51.43%), Query Frame = 1
Query:  220 NFYHTRDGKPGQLIPWLQDVQLAEPYRETTVKVENARDGHSYEWEVRQVGQPDNVIASATGAEATIIFPKLEWNMVTLQEKDASGNVTREYSENVIVKYVRREIR 534
            N Y    G+ G   PWL+  +LAEPYRET +KV +   G +Y W++    +    + S      T  +  +    + L E   +G  T+  S+ V+VKYVRREIR
Sbjct:    1 NTYTRAYGRAGVQYPWLEGKKLAEPYRETELKVLDPIPGATYTWQI----EGSEELTSVGDERLTYSWKNVGTYKLILTETLENGESTQVASD-VVVKYVRREIR 100          
BLAST of mRNA_F-serratus_M_contig1282.2095.1 vs. uniprot
Match: A0A7S2R6I2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R6I2_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 3.220e-5
Identity = 43/128 (33.59%), Postives = 60/128 (46.88%), Query Frame = 1
Query:  151 KGAIRQHGDVKSSLDEDLVFSMTNFYHTRDGKPGQLIPWLQDVQLAEPYRETTVKVENARDGHSYEWEVRQVGQPDNVIASATGAEATIIFPKLEWNMVTLQEKDASGNVTREYSENVIVKYVRREIR 534
            K   R     +  L   L  S+T+ Y  R     Q  PWL    LAEPYR ++++V + +   SY W +     PD V+    G    ++F    +N V L+  +    V  E   NV+VKYVRREIR
Sbjct:   97 KNFFRSGEGGRRRLSTGLDMSITSEYSRRSPAATQY-PWLY---LAEPYRVSSLQVSDPQSESSYRWSL-----PDRVVGY--GESLDMVFTTTGYNEVLLERLEGDS-VVDEAVFNVMVKYVRREIR 212          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1282.2095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JY30_9PHAE4.710e-2954.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRR4_9PHAE1.540e-2754.46TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
D8LC42_ECTSI2.510e-2645.77TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpu... [more]
D8LC28_ECTSI3.340e-2648.12TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpu... [more]
D8LC46_ECTSI2.990e-2546.46Tyrosinase_Cu-bd domain-containing protein n=3 Tax... [more]
A0A6H5J676_9PHAE4.790e-2450.00TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A6H5J7R8_9PHAE9.130e-2241.67TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G9A4_ECTSI5.030e-1850.54Ortho-aminophenol oxidase n=1 Tax=Ectocarpus silic... [more]
A0A7S3XQ55_HETAK1.060e-635.24Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2R6I2_9STRA3.220e-533.59Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1282contigF-serratus_M_contig1282:123106..123639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size535
Cds size534
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929224.1078472-CDS-F-serratus_M_contig1282:123105..1236391622929224.1078472-CDS-F-serratus_M_contig1282:123105..123639Fucus serratus maleCDSF-serratus_M_contig1282 123106..123639 +
1690962757.077145-CDS-F-serratus_M_contig1282:123105..1236391690962757.077145-CDS-F-serratus_M_contig1282:123105..123639Fucus serratus maleCDSF-serratus_M_contig1282 123106..123639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1282.2095.1prot_F-serratus_M_contig1282.2095.1Fucus serratus malepolypeptideF-serratus_M_contig1282 123106..123639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1282.2095.1

>prot_F-serratus_M_contig1282.2095.1 ID=prot_F-serratus_M_contig1282.2095.1|Name=mRNA_F-serratus_M_contig1282.2095.1|organism=Fucus serratus male|type=polypeptide|length=178bp
SKKLADRCGYFRDGRRYRHDNQPIEGADGDERLPENSSSRGSNNLAEKLP
KGAIRQHGDVKSSLDEDLVFSMTNFYHTRDGKPGQLIPWLQDVQLAEPYR
ETTVKVENARDGHSYEWEVRQVGQPDNVIASATGAEATIIFPKLEWNMVT
LQEKDASGNVTREYSENVIVKYVRREIR
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mRNA from alignment at F-serratus_M_contig1282:123106..123639+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1282.2095.1 ID=mRNA_F-serratus_M_contig1282.2095.1|Name=mRNA_F-serratus_M_contig1282.2095.1|organism=Fucus serratus male|type=mRNA|length=534bp|location=Sequence derived from alignment at F-serratus_M_contig1282:123106..123639+ (Fucus serratus male)
TCGAAGAAACTGGCTGACCGTTGCGGTTATTTCCGCGATGGCCGTAGGTA CCGTCATGACAACCAACCGATCGAAGGCGCTGACGGCGACGAGCGCCTCC CCGAAAACAGCAGCTCTCGTGGAAGCAATAACTTGGCGGAAAAATTGCCT AAAGGTGCAATCCGCCAGCACGGCGATGTAAAATCTTCACTCGACGAGGA TCTTGTGTTCAGCATGACTAACTTCTATCATACGCGCGACGGTAAGCCGG GCCAGCTTATCCCCTGGCTGCAAGACGTCCAGCTGGCGGAACCTTACCGC GAGACGACGGTGAAGGTAGAAAACGCTCGTGACGGGCATAGCTACGAGTG GGAGGTTCGACAGGTTGGGCAGCCCGACAACGTTATTGCCTCAGCGACTG GCGCAGAGGCCACCATCATCTTCCCCAAGCTGGAATGGAACATGGTAACC CTGCAGGAGAAGGATGCGTCTGGCAACGTAACACGAGAGTACTCGGAAAA CGTGATCGTCAAGTACGTGAGGAGGGAGATCAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1282:123106..123639+

>mRNA_F-serratus_M_contig1282.2095.1 ID=mRNA_F-serratus_M_contig1282.2095.1|Name=mRNA_F-serratus_M_contig1282.2095.1|organism=Fucus serratus male|type=CDS|length=1068bp|location=Sequence derived from alignment at F-serratus_M_contig1282:123106..123639+ (Fucus serratus male)
TCGAAGAAACTGGCTGACCGTTGCGGTTATTTCCGCGATGGCCGTAGGTA
CCGTCATGACAACCAACCGATCGAAGGCGCTGACGGCGACGAGCGCCTCC
CCGAAAACAGCAGCTCTCGTGGAAGCAATAACTTGGCGGAAAAATTGCCT
AAAGGTGCAATCCGCCAGCACGGCGATGTAAAATCTTCACTCGACGAGGA
TCTTGTGTTCAGCATGACTAACTTCTATCATACGCGCGACGGTAAGCCGG
GCCAGCTTATCCCCTGGCTGCAAGACGTCCAGCTGGCGGAACCTTACCGC
GAGACGACGGTGAAGGTAGAAAACGCTCGTGACGGGCATAGCTACGAGTG
GGAGGTTCGACAGGTTGGGCAGCCCGACAACGTTATTGCCTCAGCGACTG
GCGCAGAGGCCACCATCATCTTCCCCAAGCTGGAATGGAACATGGTAACC
CTGCAGGAGAAGGATGCGTCTGGCAACGTAACACGAGAGTACTCGGAAAA
CGTGATCGTCAAGTACGTGAGGAGGGAGATCAGGTCGAAGAAACTGGCTG
ACCGTTGCGGTTATTTCCGCGATGGCCGTAGGTACCGTCATGACAACCAA
CCGATCGAAGGCGCTGACGGCGACGAGCGCCTCCCCGAAAACAGCAGCTC
TCGTGGAAGCAATAACTTGGCGGAAAAATTGCCTAAAGGTGCAATCCGCC
AGCACGGCGATGTAAAATCTTCACTCGACGAGGATCTTGTGTTCAGCATG
ACTAACTTCTATCATACGCGCGACGGTAAGCCGGGCCAGCTTATCCCCTG
GCTGCAAGACGTCCAGCTGGCGGAACCTTACCGCGAGACGACGGTGAAGG
TAGAAAACGCTCGTGACGGGCATAGCTACGAGTGGGAGGTTCGACAGGTT
GGGCAGCCCGACAACGTTATTGCCTCAGCGACTGGCGCAGAGGCCACCAT
CATCTTCCCCAAGCTGGAATGGAACATGGTAACCCTGCAGGAGAAGGATG
CGTCTGGCAACGTAACACGAGAGTACTCGGAAAACGTGATCGTCAAGTAC
GTGAGGAGGGAGATCAGG
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