mRNA_F-serratus_M_contig128.2092.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig128.2092.1
Unique NamemRNA_F-serratus_M_contig128.2092.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig128.2092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig128contigF-serratus_M_contig128:782053..783136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size167
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929214.3408203-CDS-F-serratus_M_contig128:782052..7821351622929214.3408203-CDS-F-serratus_M_contig128:782052..782135Fucus serratus maleCDSF-serratus_M_contig128 782053..782135 +
1690962753.4705048-CDS-F-serratus_M_contig128:782052..7821351690962753.4705048-CDS-F-serratus_M_contig128:782052..782135Fucus serratus maleCDSF-serratus_M_contig128 782053..782135 +
1622929214.3529687-CDS-F-serratus_M_contig128:783052..7831341622929214.3529687-CDS-F-serratus_M_contig128:783052..783134Fucus serratus maleCDSF-serratus_M_contig128 783053..783134 +
1690962753.480927-CDS-F-serratus_M_contig128:783052..7831341690962753.480927-CDS-F-serratus_M_contig128:783052..783134Fucus serratus maleCDSF-serratus_M_contig128 783053..783134 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig128.2092.1prot_F-serratus_M_contig128.2092.1Fucus serratus malepolypeptideF-serratus_M_contig128 782053..783134 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig128.2092.1

>prot_F-serratus_M_contig128.2092.1 ID=prot_F-serratus_M_contig128.2092.1|Name=mRNA_F-serratus_M_contig128.2092.1|organism=Fucus serratus male|type=polypeptide|length=55bp
ASRPRAGSCAPCIDPKGFALRCTNITIKLRHIVGSVLKDRAAQVEHVTTE
HIVPP
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mRNA from alignment at F-serratus_M_contig128:782053..783136+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig128.2092.1 ID=mRNA_F-serratus_M_contig128.2092.1|Name=mRNA_F-serratus_M_contig128.2092.1|organism=Fucus serratus male|type=mRNA|length=1084bp|location=Sequence derived from alignment at F-serratus_M_contig128:782053..783136+ (Fucus serratus male)
GCTTCCCGACCAAGAGCAGGCTCGTGCGCCCCCTGTATCGATCCCAAAGG
TTTCGCTTTGCGCTGCACCAACATCACCATTAAGTGAGTCGAGACTCGGT
CGGATTCCCACTCTCTCCCCATTCCCCCGCGCGTCTGCTTTCATCGTCTC
TCTATCCCCCCCCGCATCAGCACCCGTGCCTGTCCTCCCACCATAATCTT
TGCTGTAGAGCTCTTTTTCAATTGCAACAGGCGCTTGCGTGCGGCTGTCT
TTGCCTTTCGCCTTTTGAAGATTGCGCTCTTGTCGGGAGATCTTTACAGG
TACCGCAAACGAGAGTTACACGATTTAACCGGGGGTGGAAGGCGTTTTTG
ACAGGGGAAGGTATGTCCGTGGTCAAGCGCTTGCGAAAAGGTCTGTTCGA
CCGGGGCTAAGGTAGTATAGTTATGCTAGGATCAAATGCCGCCTATGTTC
GCACGTCCAAGACATATTTCATTGTGGGATCAAAAAGGTCAAAGCTGCGC
ACATCCAGGGTCGCAGGAAGATGTATGATTTTTACTCACCTTTCGTCTCT
CCTTGGCGGATAGTCGTGCACCCCCAAAAGAGCCGCAACCGGCTTCGGCG
TTTTTTAGCCATCTCCACCGCCGGCGCTTTATTAGCCGTCTCCACCACCG
GAGCTTTTAGCCGTCTCCACCGCCGTCGCGTTTTTAGCAGTCTCCACCGC
CGTCGCTTTATTAGCCGTCTCCACCGCCGTCGCTTTTTTAGCCGTCTCCA
CCGCCGGCGCTTTTTTAGCCGTCTCCACCGCCGGCGCTTTTTTTTCCACC
GCCGGCGCTTTTTTAGCCGTCTCCACCGCCGGCGCTTTGTTAGCCGTCTC
CACCGCCGCGCGCGTCTTTTTAGCCGTCTCCACCGCCGGCGCTTTTTTAG
CCGTCTCCACCGCCGGCGCTTTTTTAGCCGTCTCTACCGCCGCCGCTTTT
TCTGCCTGCCAACATTTTCCACTCACAAATTTCTTCTGCGGGATTTGGAG
ACTAAGGCACATCGTGGGCTCGGTGCTGAAGGATCGCGCGGCGCAGGTGG
AGCACGTCACTACCGAGCACATCGTACCGCCGAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig128:782053..783136+

>mRNA_F-serratus_M_contig128.2092.1 ID=mRNA_F-serratus_M_contig128.2092.1|Name=mRNA_F-serratus_M_contig128.2092.1|organism=Fucus serratus male|type=CDS|length=330bp|location=Sequence derived from alignment at F-serratus_M_contig128:782053..783136+ (Fucus serratus male)
GCTTCCCGACCAAGAGCAGGCTCGTGCGCCCCCTGTATCGATCCCAAAGG
TTTCGCTTTGCGCTGCACCAACATCACCATTAAGCTTCCCGACCAAGAGC
AGGCTCGTGCGCCCCCTGTATCGATCCCAAAGGTTTCGCTTTGCGCTGCA
CCAACATCACCATTAAACTAAGGCACATCGTGGGCTCGGTGCTGAAGGAT
CGCGCGGCGCAGGTGGAGCACGTCACTACCGAGCACATCGTACCGCCGAC
TAAGGCACATCGTGGGCTCGGTGCTGAAGGATCGCGCGGCGCAGGTGGAG
CACGTCACTACCGAGCACATCGTACCGCCG
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