mRNA_F-serratus_M_contig128.2086.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig128.2086.1
Unique NamemRNA_F-serratus_M_contig128.2086.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig128.2086.1 vs. uniprot
Match: D7FUP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUP2_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 1.460e-52
Identity = 81/98 (82.65%), Postives = 88/98 (89.80%), Query Frame = 1
Query:    1 GHHTILLVQRDYPNSRTWYDLPSTSQAMERVTKMYEARLKEKNPSQVHITYDITDLYRFIDDLGDLSALVHDDETGMYIPHGKAWIKEFLFKFFQQQA 294
            G+HTILLVQRD  NSR +YDLPSTSQAMERV KMYEARLKE NP QVHITYDITDLY FID+LGDLSALV + +TGMY PHGKAWIKE+LFK+FQQQA
Sbjct:    2 GYHTILLVQRDSVNSRMYYDLPSTSQAMERVVKMYEARLKEVNPRQVHITYDITDLYGFIDELGDLSALVANTDTGMYTPHGKAWIKEYLFKYFQQQA 99          
BLAST of mRNA_F-serratus_M_contig128.2086.1 vs. uniprot
Match: A0A067C2K0_SAPPC (Enhancer of rudimentary homolog n=11 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C2K0_SAPPC)

HSP 1 Score: 107 bits (268), Expect = 1.950e-28
Identity = 55/97 (56.70%), Postives = 70/97 (72.16%), Query Frame = 1
Query:    7 HTILLVQ-RDYPNSRTWYDLPSTSQAMERVTKMYEARLKEKNPSQVHITYDITDLYRFIDDLGDLSALVHDDETGMYIPHGKAWIKEFLFKFFQQQA 294
            HTI+LVQ  + PNSRT+ D  S + AM+ V KMYEA+LK+ NPS+ +ITYDI DLY +ID L DLS LV D ET  Y+P GK WIK+ +F+  + QA
Sbjct:    8 HTIILVQYTEDPNSRTYLDFESVNGAMDGVVKMYEAKLKQLNPSKRNITYDIQDLYNYIDSLADLSTLVLDLETKTYLPSGKEWIKKKIFQVLRNQA 104          
BLAST of mRNA_F-serratus_M_contig128.2086.1 vs. uniprot
Match: W7TPS2_9STRA (Enhancer of rudimentary homolog n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPS2_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.760e-28
Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = 1
Query:    1 GHHTILLVQRDYP-NSRTWYDLPSTSQAMERVTKMYEARLKEKNPSQVHITYDITDLYRFIDDLGDLSALVHDDETGMYIPHGKAWIKEFLFKFFQQQA 294
              HTILLVQ     +SRT++D P+  +AM+ V KMYE +LK+ NPS  HITYDIT L RF+DDL DLSALV D  T  Y PH K W+K  +++  +QQA
Sbjct:    3 SRHTILLVQPTRAASSRTFFDFPTVYEAMDEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQA 101          
BLAST of mRNA_F-serratus_M_contig128.2086.1 vs. uniprot
Match: A0A0N4UZR5_ENTVE (Enhancer of rudimentary homolog n=2 Tax=Oxyuridae TaxID=51026 RepID=A0A0N4UZR5_ENTVE)

HSP 1 Score: 107 bits (266), Expect = 3.490e-28
Identity = 51/97 (52.58%), Postives = 66/97 (68.04%), Query Frame = 1
Query:    7 HTILLVQ-RDYPNSRTWYDLPSTSQAMERVTKMYEARLKEKNPSQVHITYDITDLYRFIDDLGDLSALVHDDETGMYIPHGKAWIKEFLFKFFQQQA 294
            HTILL+Q    P+SRTW D  +T++ ME V K++E  LK+ NP    ITYD+ +L+ FID LGDLS LV +D T  Y PH K WIKE ++K  Q+QA
Sbjct:    3 HTILLIQPTSRPDSRTWSDYETTTECMEGVCKIFEEHLKKLNPKSASITYDVQNLFHFIDRLGDLSCLVFNDATSTYAPHNKVWIKEQIYKMLQRQA 99          
BLAST of mRNA_F-serratus_M_contig128.2086.1 vs. uniprot
Match: H3GGY0_PHYRM (Enhancer of rudimentary homolog n=14 Tax=Oomycota TaxID=4762 RepID=H3GGY0_PHYRM)

HSP 1 Score: 105 bits (262), Expect = 1.640e-27
Identity = 57/98 (58.16%), Postives = 70/98 (71.43%), Query Frame = 1
Query:    7 HTILLVQ--RDYPNSRTWYDLPSTSQAMERVTKMYEARLKEKNPSQVHITYDITDLYRFIDDLGDLSALVHDDETGMYIPHGKAWIKEFLFKFFQQQA 294
            HTI+LVQ  RD PNSRT+ D  S +  M+ V KMYEA+LK+ NPS  +ITYDI DLY +ID L DLSALV D ET  Y+P GK WIK+ +F+  + QA
Sbjct:    9 HTIILVQYTRD-PNSRTYLDFESVNGGMDGVVKMYEAKLKQLNPSMKNITYDIQDLYTYIDSLTDLSALVLDLETKTYLPCGKEWIKKKVFQVLKNQA 105          
BLAST of mRNA_F-serratus_M_contig128.2086.1 vs. uniprot
Match: W2GHL6_PHYPR (Enhancer of rudimentary homolog n=9 Tax=Phytophthora TaxID=4783 RepID=W2GHL6_PHYPR)

HSP 1 Score: 103 bits (257), Expect = 9.420e-27
Identity = 56/98 (57.14%), Postives = 70/98 (71.43%), Query Frame = 1
Query:    7 HTILLVQ--RDYPNSRTWYDLPSTSQAMERVTKMYEARLKEKNPSQVHITYDITDLYRFIDDLGDLSALVHDDETGMYIPHGKAWIKEFLFKFFQQQA 294
            HTI+LVQ  RD PNSRT+ D  S +  M+ V KMYEA+LK+ NP+  +ITYDI DLY +ID L DLSALV D ET  Y+P GK WIK+ +F+  + QA
Sbjct:    9 HTIILVQYTRD-PNSRTYLDFESVNGGMDGVVKMYEAKLKQLNPNLKNITYDIQDLYTYIDSLTDLSALVLDLETKTYLPCGKEWIKKKVFQVLKNQA 105          
BLAST of mRNA_F-serratus_M_contig128.2086.1 vs. uniprot
Match: A0A3R7W6D4_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7W6D4_9STRA)

HSP 1 Score: 103 bits (256), Expect = 5.120e-26
Identity = 56/98 (57.14%), Postives = 69/98 (70.41%), Query Frame = 1
Query:    7 HTILLVQ--RDYPNSRTWYDLPSTSQAMERVTKMYEARLKEKNPSQVHITYDITDLYRFIDDLGDLSALVHDDETGMYIPHGKAWIKEFLFKFFQQQA 294
            HTI+LVQ  RD PNSRT+ D  S +  M+ V KMYEA+LK+ NP   +ITYDI DLY +ID L DLSALV D ET  Y+P GK WIK+ +F+  + QA
Sbjct:   57 HTIILVQYTRD-PNSRTYLDFESVNGGMDGVVKMYEAKLKQLNPDLKNITYDIQDLYTYIDSLTDLSALVLDLETKTYLPCGKEWIKKKVFQVLKNQA 153          
BLAST of mRNA_F-serratus_M_contig128.2086.1 vs. uniprot
Match: A0A7S2V253_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V253_9STRA)

HSP 1 Score: 102 bits (253), Expect = 6.550e-26
Identity = 50/98 (51.02%), Postives = 67/98 (68.37%), Query Frame = 1
Query:    7 HTILLVQRDYPN--SRTWYDLPSTSQAMERVTKMYEARLKEKNPSQVHITYDITDLYRFIDDLGDLSALVHDDETGMYIPHGKAWIKEFLFKFFQQQA 294
            HTI+L Q   PN  SR W +  +   AM+ V KMYE RLK+ NP   HITYDI+DL+ ++D L +LSAL +D+ETG Y P+GK WIK+ +F+  + QA
Sbjct:   27 HTIVLSQTT-PNIGSRRWNEYETIKMAMDSVIKMYETRLKQVNPDAAHITYDISDLFGYVDTLPELSALAYDNETGQYAPYGKEWIKQRIFQHLRSQA 123          
BLAST of mRNA_F-serratus_M_contig128.2086.1 vs. uniprot
Match: A0A564Y650_HYMDI (Enhancer of rudimentary homolog n=1 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A564Y650_HYMDI)

HSP 1 Score: 99.0 bits (245), Expect = 5.610e-25
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = 1
Query:    7 HTILLVQRDY--PNSRTWYDLPSTSQAMERVTKMYEARLKEKNPSQVHITYDITDLYRFIDDLGDLSALVHDDETGMYIPHGKAWIKEFLFKFFQQQA 294
            HTILL+Q+    P+SR W D  + +Q +E V K+YE +LK++NP+   ITYDI+ L+ FID L DLS LV +  +G Y+PH K WIKE ++   ++QA
Sbjct:    3 HTILLLQQQVKKPDSRVWADYETVNQFLEGVCKIYEEQLKQQNPTAPTITYDISQLFEFIDQLADLSCLVFNPHSGTYVPHTKEWIKENIYALLRKQA 100          
BLAST of mRNA_F-serratus_M_contig128.2086.1 vs. uniprot
Match: UPI0002657C26 (enhancer of rudimentary homolog n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0002657C26)

HSP 1 Score: 98.6 bits (244), Expect = 7.320e-25
Identity = 45/96 (46.88%), Postives = 64/96 (66.67%), Query Frame = 1
Query:    7 HTILLVQRDYPNSRTWYDLPSTSQAMERVTKMYEARLKEKNPSQVHITYDITDLYRFIDDLGDLSALVHDDETGMYIPHGKAWIKEFLFKFFQQQA 294
            HTILL+Q   P +RT+ D  S ++ MER+  ++E  LK++NP    ITYDI+ L+ FID L D++ LVH   T +Y P+ KAWIKE ++   +QQA
Sbjct:    3 HTILLLQTSGPETRTYADFESINECMERICHIFEEHLKKQNPESPSITYDISQLFEFIDQLHDMTCLVHQKTTNVYSPYTKAWIKEKIYALLKQQA 98          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig128.2086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUP2_ECTSI1.460e-5282.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A067C2K0_SAPPC1.950e-2856.70Enhancer of rudimentary homolog n=11 Tax=Saprolegn... [more]
W7TPS2_9STRA2.760e-2854.55Enhancer of rudimentary homolog n=2 Tax=Monodopsid... [more]
A0A0N4UZR5_ENTVE3.490e-2852.58Enhancer of rudimentary homolog n=2 Tax=Oxyuridae ... [more]
H3GGY0_PHYRM1.640e-2758.16Enhancer of rudimentary homolog n=14 Tax=Oomycota ... [more]
W2GHL6_PHYPR9.420e-2757.14Enhancer of rudimentary homolog n=9 Tax=Phytophtho... [more]
A0A3R7W6D4_9STRA5.120e-2657.14Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A7S2V253_9STRA6.550e-2651.02Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A564Y650_HYMDI5.610e-2547.96Enhancer of rudimentary homolog n=1 Tax=Hymenolepi... [more]
UPI0002657C267.320e-2546.88enhancer of rudimentary homolog n=1 Tax=Galendromu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig128contigF-serratus_M_contig128:689179..690225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.9
Seed ortholog evalue2.3e-39
Seed eggNOG ortholog2880.D7FUP2
Preferred nameCLEC2L
KEGG koko:K17086
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of Notch signaling pathway
EggNOG OGsKOG1766@1,KOG1766@2759
Ec32 ortholog descriptionEnhancer of rudimentary
Ec32 orthologEc-26_002200.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Exons3
Model size294
Cds size294
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig128.2086.1prot_F-serratus_M_contig128.2086.1Fucus serratus malepolypeptideF-serratus_M_contig128 689179..690225 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929220.9633427-CDS-F-serratus_M_contig128:689178..6892631622929220.9633427-CDS-F-serratus_M_contig128:689178..689263Fucus serratus maleCDSF-serratus_M_contig128 689179..689263 -
1690962756.2982187-CDS-F-serratus_M_contig128:689178..6892631690962756.2982187-CDS-F-serratus_M_contig128:689178..689263Fucus serratus maleCDSF-serratus_M_contig128 689179..689263 -
1622929220.975822-CDS-F-serratus_M_contig128:689577..6896981622929220.975822-CDS-F-serratus_M_contig128:689577..689698Fucus serratus maleCDSF-serratus_M_contig128 689578..689698 -
1690962756.3157976-CDS-F-serratus_M_contig128:689577..6896981690962756.3157976-CDS-F-serratus_M_contig128:689577..689698Fucus serratus maleCDSF-serratus_M_contig128 689578..689698 -
1622929220.9901254-CDS-F-serratus_M_contig128:690137..6902251622929220.9901254-CDS-F-serratus_M_contig128:690137..690225Fucus serratus maleCDSF-serratus_M_contig128 690138..690225 -
1690962756.3242633-CDS-F-serratus_M_contig128:690137..6902251690962756.3242633-CDS-F-serratus_M_contig128:690137..690225Fucus serratus maleCDSF-serratus_M_contig128 690138..690225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig128.2086.1

>prot_F-serratus_M_contig128.2086.1 ID=prot_F-serratus_M_contig128.2086.1|Name=mRNA_F-serratus_M_contig128.2086.1|organism=Fucus serratus male|type=polypeptide|length=98bp
GHHTILLVQRDYPNSRTWYDLPSTSQAMERVTKMYEARLKEKNPSQVHIT
YDITDLYRFIDDLGDLSALVHDDETGMYIPHGKAWIKEFLFKFFQQQA
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mRNA from alignment at F-serratus_M_contig128:689179..690225-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig128.2086.1 ID=mRNA_F-serratus_M_contig128.2086.1|Name=mRNA_F-serratus_M_contig128.2086.1|organism=Fucus serratus male|type=mRNA|length=1047bp|location=Sequence derived from alignment at F-serratus_M_contig128:689179..690225- (Fucus serratus male)
GGACACCATACGATTCTGCTGGTGCAGCGAGATTACCCCAACTCTAGGAC TTGGTACGACCTCCCTTCTACGAGCCAGGCGATGGAACGTGAGTAAATTC ACCGTATGCCACTGCTCGGGTTCATCCCAAGGCAGGGCAAAATACTGATT CCACCTACGGACGATCCTGTACAACCCGGTACACTCTTGTCCGAAAGTTG CCACGAAATAAACGACACACATGTTGTTGCATCGGGTACGGGTCTTCCTT CCTCTGTCACTTGTCTCCAGACCAAGAGACCTATGCGGTTCGTTTCGAAC GCCAACAATCGCTAGCCTTGCATGCTTCACGTCTCGAGTAATTGACCATC GTTGCTCCTACGCAGAGTATTCTTGATCAAAAAGCGCGCCCAAGTACATC CATGCAGCAGCGACCGCTGTTGAAAGCTTGAACGCCGTGACGGCGCCCAG CTCTCTTGCTCGTACCTCCCCCCCCATCAGAGGCATGTTTACTCTTCCGA CTGAATGGTTTTTCGTACTTTCTTCAGGCGTGACGAAGATGTACGAGGCG CGTTTGAAGGAGAAAAACCCGAGCCAAGTGCACATCACGTACGACATCAC TGATCTCTACCGCTTCATCGACGACCTGGGGGACCTTAGCGCTCTCGTGT GAGTTGTGGACGCTTAAGGCGCTCGGCGCTCGAGTGGTTGGCGCTCCCTC ATCGAGCACCGAATGCACGTACGATAACTCTTGGTTGCGTTGCGGGAATG TTGCACACACCTACACGAGAGAGAGAAACAGAGCAACAGTTTAGTTGAGC CCCCATTTAAGAGAGAGGGCCAGAGCGAGGAGCATCGATATCGAATGAAT CGCACGACAAGGCAAAATTGCGCGGCCCATATGTACATTGAAATAAAATG CATACGATCGCGCCCAACCCAATGCGCTTGTCCTTGTTTGCTTTCATCGC GATATCTGGCAGCCACGATGACGAGACCGGGATGTACATTCCGCATGGCA AGGCATGGATAAAGGAGTTTCTCTTCAAGTTTTTCCAGCAGCAGGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig128:689179..690225-

>mRNA_F-serratus_M_contig128.2086.1 ID=mRNA_F-serratus_M_contig128.2086.1|Name=mRNA_F-serratus_M_contig128.2086.1|organism=Fucus serratus male|type=CDS|length=588bp|location=Sequence derived from alignment at F-serratus_M_contig128:689179..690225- (Fucus serratus male)
GGACACCATACGATTCTGCTGGTGCAGCGAGATTACCCCAACTCTAGGAC
TTGGTACGACCTCCCTTCTACGAGCCAGGCGATGGAACGGACACCATACG
ATTCTGCTGGTGCAGCGAGATTACCCCAACTCTAGGACTTGGTACGACCT
CCCTTCTACGAGCCAGGCGATGGAACGCGTGACGAAGATGTACGAGGCGC
GTTTGAAGGAGAAAAACCCGAGCCAAGTGCACATCACGTACGACATCACT
GATCTCTACCGCTTCATCGACGACCTGGGGGACCTTAGCGCTCTCGTGCG
TGACGAAGATGTACGAGGCGCGTTTGAAGGAGAAAAACCCGAGCCAAGTG
CACATCACGTACGACATCACTGATCTCTACCGCTTCATCGACGACCTGGG
GGACCTTAGCGCTCTCGTCCACGATGACGAGACCGGGATGTACATTCCGC
ATGGCAAGGCATGGATAAAGGAGTTTCTCTTCAAGTTTTTCCAGCAGCAG
GCGCCACGATGACGAGACCGGGATGTACATTCCGCATGGCAAGGCATGGA
TAAAGGAGTTTCTCTTCAAGTTTTTCCAGCAGCAGGCG
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