mRNA_F-serratus_M_contig128.2065.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig128.2065.1
Unique NamemRNA_F-serratus_M_contig128.2065.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig128.2065.1 vs. uniprot
Match: F0YDV4_AURAN (Ribosomal protein L39 (Fragment) n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YDV4_AURAN)

HSP 1 Score: 100 bits (248), Expect = 7.570e-27
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 QPSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 153
            QPSHKTFRTK TL KKMKQNRPIP WIR+RTDNKIR+NAKRRHWRRTKLGL
Sbjct:    1 QPSHKTFRTKRTLAKKMKQNRPIPQWIRMRTDNKIRWNAKRRHWRRTKLGL 51
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BLAST of mRNA_F-serratus_M_contig128.2065.1 vs. uniprot
Match: A0A199VEH0_ANACO (60S ribosomal protein L39 n=45 Tax=cellular organisms TaxID=131567 RepID=A0A199VEH0_ANACO)

HSP 1 Score: 95.5 bits (236), Expect = 5.150e-25
Identity = 42/50 (84.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    4 PSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 153
            PSHKTFR K+ L KKM+QNRPIPHWIR+RTDN IRYNAKRRHWRRTKLG 
Sbjct:    2 PSHKTFRIKMKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51
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BLAST of mRNA_F-serratus_M_contig128.2065.1 vs. uniprot
Match: A0A835YZW6_9STRA (Ribosomal protein L39e n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZW6_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 5.150e-25
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    4 PSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 153
            PSHKTFRTK TL  K+KQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGL
Sbjct:    2 PSHKTFRTKRTLAVKLKQNRPIPNWIRLRTDNTIRYNAKRRHWRRTKLGL 51
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BLAST of mRNA_F-serratus_M_contig128.2065.1 vs. uniprot
Match: A0A0A0LYE1_CUCSA (Uncharacterized protein n=9 Tax=fabids TaxID=91835 RepID=A0A0A0LYE1_CUCSA)

HSP 1 Score: 95.1 bits (235), Expect = 7.320e-25
Identity = 43/50 (86.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    4 PSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 153
            PSHKTFR K  L KKM+QNRPIPHWIRLRTDN IRYNAKRRHWRRTKLG 
Sbjct:    2 PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
[Close]
BLAST of mRNA_F-serratus_M_contig128.2065.1 vs. uniprot
Match: A0A7J7Q6B9_9CHLO (60S ribosomal protein L39 n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q6B9_9CHLO)

HSP 1 Score: 95.1 bits (235), Expect = 7.320e-25
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    4 PSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 153
            PS KTFRTKV L KK KQNRPIPHWIR RT+NKIRYNAKRRHWRRTKLG+
Sbjct:    2 PSQKTFRTKVKLAKKAKQNRPIPHWIRFRTNNKIRYNAKRRHWRRTKLGI 51
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BLAST of mRNA_F-serratus_M_contig128.2065.1 vs. uniprot
Match: A0A565CAR9_9BRAS (Uncharacterized protein n=14 Tax=Mesangiospermae TaxID=1437183 RepID=A0A565CAR9_9BRAS)

HSP 1 Score: 95.1 bits (235), Expect = 7.670e-25
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 QPSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 153
            QPSHK+F  K  LGKKM+QNRPIPHWIRLRTDN IRYNAKRRHWRRTKLG 
Sbjct:    3 QPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 53
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BLAST of mRNA_F-serratus_M_contig128.2065.1 vs. uniprot
Match: A0A218W104_PUNGR (Uncharacterized protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A218W104_PUNGR)

HSP 1 Score: 95.9 bits (237), Expect = 8.850e-25
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 QPSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 153
            QPSHKTFR K  L KKM+QNRPIPHWIR+RTDN IRYNAKRRHWRRTKLG 
Sbjct:   35 QPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 85
[Close]
BLAST of mRNA_F-serratus_M_contig128.2065.1 vs. uniprot
Match: A0A2I0K803_PUNGR (Uncharacterized protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0K803_PUNGR)

HSP 1 Score: 95.9 bits (237), Expect = 9.360e-25
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 QPSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 153
            QPSHKTFR K  L KKM+QNRPIPHWIR+RTDN IRYNAKRRHWRRTKLG 
Sbjct:   37 QPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 87
[Close]
BLAST of mRNA_F-serratus_M_contig128.2065.1 vs. uniprot
Match: H3G5I2_PHYRM (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=H3G5I2_PHYRM)

HSP 1 Score: 94.7 bits (234), Expect = 1.040e-24
Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 QPSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 153
            QPSHKTFRTK  L KK KQNRPIP WIRLRTDN I+YNAKRRHWRRTKLGL
Sbjct:    1 QPSHKTFRTKRILAKKAKQNRPIPQWIRLRTDNTIKYNAKRRHWRRTKLGL 51
[Close]
BLAST of mRNA_F-serratus_M_contig128.2065.1 vs. uniprot
Match: A0A6J0NXD3_RAPSA (60S ribosomal protein L39-2 n=15 Tax=Magnoliopsida TaxID=3398 RepID=A0A6J0NXD3_RAPSA)

HSP 1 Score: 94.7 bits (234), Expect = 1.040e-24
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    4 PSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 153
            PSHKTF+ K  LGKKM+QNRPIP WIRLRTDNKIRYNAKRRHWRRTKLG 
Sbjct:    2 PSHKTFKIKKKLGKKMRQNRPIPGWIRLRTDNKIRYNAKRRHWRRTKLGF 51
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig128.2065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0YDV4_AURAN7.570e-2790.20Ribosomal protein L39 (Fragment) n=2 Tax=Pelagomon... [more]
A0A199VEH0_ANACO5.150e-2584.0060S ribosomal protein L39 n=45 Tax=cellular organi... [more]
A0A835YZW6_9STRA5.150e-2588.00Ribosomal protein L39e n=1 Tax=Tribonema minus Tax... [more]
A0A0A0LYE1_CUCSA7.320e-2586.00Uncharacterized protein n=9 Tax=fabids TaxID=91835... [more]
A0A7J7Q6B9_9CHLO7.320e-2586.0060S ribosomal protein L39 n=1 Tax=Scenedesmus sp. ... [more]
A0A565CAR9_9BRAS7.670e-2584.31Uncharacterized protein n=14 Tax=Mesangiospermae T... [more]
A0A218W104_PUNGR8.850e-2584.31Uncharacterized protein n=1 Tax=Punica granatum Ta... [more]
A0A2I0K803_PUNGR9.360e-2584.31Uncharacterized protein n=1 Tax=Punica granatum Ta... [more]
H3G5I2_PHYRM1.040e-2486.27Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
A0A6J0NXD3_RAPSA1.040e-2486.0060S ribosomal protein L39-2 n=15 Tax=Magnoliopsida... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig128contigF-serratus_M_contig128:122888..123965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue4.8e-20
Seed eggNOG ortholog2880.D8LSX1
Preferred nameRPL39
KEGG rclassRC00055,RC00523
KEGG koko:K01886,ko:K02924
KEGG ReactionR03652
KEGG Pathwayko00970,ko01100,ko03010,map00970,map01100,map03010
KEGG ModuleM00177,M00179,M00359,M00360
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000184,GO:0000956,GO:0002181,GO:0002227,GO:0002251,GO:0002376,GO:0002385,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0007276,GO:0007283,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0019730,GO:0019731,GO:0019953,GO:0022414,GO:0022625,GO:0022626,GO:0032501,GO:0032504,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042742,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044421,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045047,GO:0045087,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048232,GO:0048519,GO:0048609,GO:0050789,GO:0050830,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0060255,GO:0061844,GO:0065007,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0098542,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0008@1,KOG0002@2759
Ec32 ortholog descriptionRibosomal protein L39e domain
Ec32 orthologEc-26_001730.1
EC6.1.1.18
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01007,ko03011,ko03016
Exons2
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929215.9569397-CDS-F-serratus_M_contig128:122887..1229941622929215.9569397-CDS-F-serratus_M_contig128:122887..122994Fucus serratus maleCDSF-serratus_M_contig128 122888..122994 +
1690962753.754053-CDS-F-serratus_M_contig128:122887..1229941690962753.754053-CDS-F-serratus_M_contig128:122887..122994Fucus serratus maleCDSF-serratus_M_contig128 122888..122994 +
1622929215.9688056-CDS-F-serratus_M_contig128:123916..1239651622929215.9688056-CDS-F-serratus_M_contig128:123916..123965Fucus serratus maleCDSF-serratus_M_contig128 123917..123965 +
1690962753.7641647-CDS-F-serratus_M_contig128:123916..1239651690962753.7641647-CDS-F-serratus_M_contig128:123916..123965Fucus serratus maleCDSF-serratus_M_contig128 123917..123965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig128.2065.1prot_F-serratus_M_contig128.2065.1Fucus serratus malepolypeptideF-serratus_M_contig128 122888..123965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig128.2065.1

>prot_F-serratus_M_contig128.2065.1 ID=prot_F-serratus_M_contig128.2065.1|Name=mRNA_F-serratus_M_contig128.2065.1|organism=Fucus serratus male|type=polypeptide|length=52bp
QPSHKTFRTKVTLGKKMKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLG
L*
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mRNA from alignment at F-serratus_M_contig128:122888..123965+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig128.2065.1 ID=mRNA_F-serratus_M_contig128.2065.1|Name=mRNA_F-serratus_M_contig128.2065.1|organism=Fucus serratus male|type=mRNA|length=1078bp|location=Sequence derived from alignment at F-serratus_M_contig128:122888..123965+ (Fucus serratus male)
CAGCCGTCCCACAAGACCTTCCGCACCAAGGTTACCCTGGGCAAGAAGAT
GAAGCAGAACAGGCCGATCCCGCACTGGATTCGCCTTCGCACGGACAACA
AGATCCGGTGAGAGAATCGACCACGGGATGTGAGGGAATGAAAGCCCACC
GAAAGATCAAACACGCGTGCATGGAAGACAGGGGTTTACAGGTAGCAGAG
AGAGGCGTTACAAAGACCGCGCTGTAAATTCGTTAGCCACGGCCACAGCG
TTTTTCCGTTTCGTTTCACATTGAACACGGCGTGAGTAGGGGCTTCTTGG
GCGAGGAAAAGGTGGATTTGGGGTTCTCGCACCGACGAGATGTGTCTGGC
TCCAGGGGTGGATTTGTGTGTTCATGGCATCTTGGCGTGTCCTCGTAACT
AAAAATTGGGCGAAGAATGCTCTTGACCATCGGAAGCGGGGACACGGTGA
TCTTGATTGTTAAGGGCGGATGGGGGATGCTTTACGGTTCCCCAAGGAAA
TATTTTGATGTTGTGCGTTAGCCCTCGTCGCCCGAGTGGTCTATTAATAG
TAGGTAAACTGCACACCTGCTAGTGCGGAAGTCGGGAGTTCGATTCTCAT
CAAACCATAATTTCTGTTCTTTCGTCCGTAGCGGAAAGCGTGAGAACATG
AGTAAGTAAAAATTACCCATTAGTTGACTTGTTGTAAAGGTACCGAACTT
GCATGCGATAAAAATTCGGAAGGCCTGAACCGGGTAGAGACAGAAAAATC
CTTAAATGACCACAGGCAGGATGGCAACGTTGGGGCCCATCGGCTATACT
ATTCATAAGTGAAGTGCGAAAAAACAATGATACATTACTTGGTCGCGATC
GCTCCGGATTTTCACGTTTGGGGTACAGCGTCAATTGTTTTGACATTTTT
TGCTGTCTTTGATATGTAATGCTCGCCTGCCTGCCCATGCAGCGCAAAAT
GTTGGAGGTGACGTGATGCCGCATCAGCTAATTCTATTCCTTACTTCCCG
CTTCCCGTGAACCTAACGCCTGCCCGCAGATACAACGCCAAGCGCCGCCA
CTGGCGCCGCACCAAGCTCGGTCTGTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig128:122888..123965+

>mRNA_F-serratus_M_contig128.2065.1 ID=mRNA_F-serratus_M_contig128.2065.1|Name=mRNA_F-serratus_M_contig128.2065.1|organism=Fucus serratus male|type=CDS|length=312bp|location=Sequence derived from alignment at F-serratus_M_contig128:122888..123965+ (Fucus serratus male)
CAGCCGTCCCACAAGACCTTCCGCACCAAGGTTACCCTGGGCAAGAAGAT
GAAGCAGAACAGGCCGATCCCGCACTGGATTCGCCTTCGCACGGACAACA
AGATCCGCAGCCGTCCCACAAGACCTTCCGCACCAAGGTTACCCTGGGCA
AGAAGATGAAGCAGAACAGGCCGATCCCGCACTGGATTCGCCTTCGCACG
GACAACAAGATCCGATACAACGCCAAGCGCCGCCACTGGCGCCGCACCAA
GCTCGGTCTGTAGATACAACGCCAAGCGCCGCCACTGGCGCCGCACCAAG
CTCGGTCTGTAG
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