mRNA_F-serratus_M_contig128.2064.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig128.2064.1 vs. uniprot
Match: A0A6H5JIA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIA6_9PHAE) HSP 1 Score: 328 bits (841), Expect = 2.010e-104 Identity = 158/201 (78.61%), Postives = 180/201 (89.55%), Query Frame = 2
Query: 560 PQPKAPPRGNNLLVVGLGNPGKQYKFTRHNAGFLVAEELARRHGGTLKIRTAFQGEYCSISFRGKSVGILLPTTFMNNSGMSARKVVDFFKLPINSALILVDEVALDFGQLRLKAKGSPGGHNGLKSIQAHLKTPDYSRLRIGIGGEDHACGAGPLSDHVLGEFTRSEKKELDSVVAEACDAVEFWIEEDDTAKVMTRFNS 1162
PQPKAPPRG+NLLVVGLGNPG +YK TRHNAGFLVAEELARRHGGTLKI+TAFQGEYCS+ + KSVGIL P T+MNNSG+SARKV+DFFKLP+N+A++LVDEVALDFGQLRLK KG GGHNGLKS+QAHLKTP+Y+RLRIG+G + LSDHVLGEFTR+EKKELD+V+A+ACDAVE WIEE+D AKVMTRFNS
Sbjct: 165 PQPKAPPRGDNLLVVGLGNPGDKYKMTRHNAGFLVAEELARRHGGTLKIKTAFQGEYCSVRVKHKSVGILRPITYMNNSGISARKVMDFFKLPMNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYTRLRIGVGASKFSEA---LSDHVLGEFTRTEKKELDNVIADACDAVEHWIEEEDMAKVMTRFNS 362
BLAST of mRNA_F-serratus_M_contig128.2064.1 vs. uniprot
Match: D8LSW9_ECTSI (Peptidyl-tRNA hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW9_ECTSI) HSP 1 Score: 283 bits (725), Expect = 8.110e-90 Identity = 136/176 (77.27%), Postives = 155/176 (88.07%), Query Frame = 2
Query: 635 FTRHNAGFLVAEELARRHGGTLKIRTAFQGEYCSISFRGKSVGILLPTTFMNNSGMSARKVVDFFKLPINSALILVDEVALDFGQLRLKAKGSPGGHNGLKSIQAHLKTPDYSRLRIGIGGEDHACGAGPLSDHVLGEFTRSEKKELDSVVAEACDAVEFWIEEDDTAKVMTRFNS 1162
TRHNAGFLVAEELARRHGGTLKI+TAFQGEYCS+ KSVGIL P T+MNNSGMSARKV+DFFKLP+N+A++LVDEVALDFGQLRLK KG GGHNGLKS+QAHLKTP+Y+RLRIG+G + LSDHVLGEFTR+EKKELD+V+A+ACDAVE W+EE+D AKVMTRFNS
Sbjct: 1 MTRHNAGFLVAEELARRHGGTLKIKTAFQGEYCSVRVNDKSVGILRPITYMNNSGMSARKVMDFFKLPMNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYTRLRIGVGASKFSEA---LSDHVLGEFTRTEKKELDNVIADACDAVEHWVEEEDMAKVMTRFNS 173
BLAST of mRNA_F-serratus_M_contig128.2064.1 vs. uniprot
Match: A0A4D9CWV7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWV7_9STRA) HSP 1 Score: 251 bits (641), Expect = 1.580e-69 Identity = 118/195 (60.51%), Postives = 153/195 (78.46%), Query Frame = 2
Query: 578 PRGNNLLVVGLGNPGKQYKFTRHNAGFLVAEELARRHGGTLKIRTAFQGEYCSISFRGKSVGILLPTTFMNNSGMSARKVVDFFKLPINSALILVDEVALDFGQLRLKAKGSPGGHNGLKSIQAHLKTPDYSRLRIGIGGEDHACGAGPLSDHVLGEFTRSEKKELDSVVAEACDAVEFWIEEDDTAKVMTRFNS 1162
PR NLL+VGLGNPGK+Y TRHNAGFL + LARR G ++R+AFQGEY ++++GKSVG+L PTTFMN SG S RKV+D+FKLP++S L++VDEVALD GQ+RL+ GS GGHNGLKSI++ LK DY+RLRIG+GG G + DHVLG+F+RSE+K LD ++ +A +A+E WIE+D+T KVM R N+
Sbjct: 742 PRSKNLLIVGLGNPGKEYAMTRHNAGFLAVDLLARRLGADFRLRSAFQGEYGCVAYKGKSVGLLKPTTFMNRSGQSLRKVLDYFKLPVSSVLVVVDEVALDIGQIRLRQTGSAGGHNGLKSIESCLKCKDYNRLRIGVGG----AAPGSMVDHVLGQFSRSERKVLDDMLIDAVEAIEDWIEDDNTDKVMNRVNA 932
BLAST of mRNA_F-serratus_M_contig128.2064.1 vs. uniprot
Match: A0A836CKJ3_9STRA (Peptidyl-tRNA hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKJ3_9STRA) HSP 1 Score: 210 bits (535), Expect = 1.330e-61 Identity = 106/177 (59.89%), Postives = 127/177 (71.75%), Query Frame = 2
Query: 635 FTRHNAGFLVAEELARRHGGTLKIRTAFQGEYCSISFRGKSVGILLPTTFMNNSGMSARKVVDFFKLPINSALILVDEVALDFGQLRLKAKGSPGGHNGLKSIQAHLKTPDYSRLRIGIGGEDHACGAGPLSDHVLGEFTRSEKKELDSVVAEACDAVEFWIEEDDTAKVMTRFNSR 1165
TRHN GFLVA+EL+RR G LK ++ FQG Y S +GKSVG+L P+TFMNNSG +ARKV DFFKL + L+L D+VALDFG LRL+ KGS GGHNGLKS+Q HL T DY+RLRIG+G L HVLGEF++ E+KELD VV++A VE WI EDD A VMT N +
Sbjct: 1 MTRHNIGFLVADELSRRWGCALKTQSKFQGLYGSAQVKGKSVGVLKPSTFMNNSGQAARKVTDFFKLNADHVLVLTDDVALDFGALRLRMKGSAGGHNGLKSLQQHLGTQDYARLRIGVGAPRK-----DLVSHVLGEFSKVERKELDMVVSDAASVVEHWIAEDDAALVMTAINGK 172
BLAST of mRNA_F-serratus_M_contig128.2064.1 vs. uniprot
Match: A0A7S3ACE0_9RHOD (Peptidyl-tRNA hydrolase n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ACE0_9RHOD) HSP 1 Score: 184 bits (468), Expect = 4.220e-51 Identity = 86/189 (45.50%), Postives = 127/189 (67.20%), Query Frame = 2
Query: 581 RGNNLLVVGLGNPGKQYKFTRHNAGFLVAEELARRHGGTLKIRTAFQGEYCSISFRGKSVGILLPTTFMNNSGMSARKVVDFFKLPINSALILVDEVALDFGQLRLKAKGSPGGHNGLKSIQAHLKTPDYSRLRIGIGGEDHACGAGPLSDHVLGEFTRSEKKELDSVVAEACDAVEFWIEEDDTAKVM 1147
RG+ L V+GLGNPG +++ TRHN GF + E A+RHGG +K+ + E C I K+V ++ P TFMN SG S RK+VDF+KLP ++ LI+ D++ L+ G++RL+AKGS GGHNGLK I+ L T Y RL++G+GG + A L D+VLG+F RSE +D ++ + ++ W++ D +KV+
Sbjct: 32 RGSRLAVIGLGNPGNEFRSTRHNVGFDIIEAFAQRHGGNMKMAQKYLAEMCEIKLENKTVMLVKPMTFMNLSGTSVRKIVDFYKLPHDAILIVADDIYLELGRVRLRAKGSSGGHNGLKHIEKSLGTQIYPRLKVGVGGPNKA----DLKDYVLGKFKRSEVDAVDDMLWTCVELIDEWVKNADLSKVV 216
BLAST of mRNA_F-serratus_M_contig128.2064.1 vs. uniprot
Match: F8L348_SIMNZ (Peptidyl-tRNA hydrolase n=1 Tax=Simkania negevensis (strain ATCC VR-1471 / Z) TaxID=331113 RepID=F8L348_SIMNZ) HSP 1 Score: 178 bits (451), Expect = 4.170e-49 Identity = 84/176 (47.73%), Postives = 116/176 (65.91%), Query Frame = 2
Query: 593 LLVVGLGNPGKQYKFTRHNAGFLVAEELARRHGGTLKIRTAFQGEYCSISFRGKSVGILLPTTFMNNSGMSARKVVDFFKLPINSALILVDEVALDFGQLRLKAKGSPGGHNGLKSIQAHLKTPDYSRLRIGIGGEDHACGAGPLSDHVLGEFTRSEKKELDSVVAEACDAVEFWI 1120
L+ GLGNPGK+Y+ TRHN GF+V + A + G T K + QGE S + V +LLP T+MN SG S RKV+D++K+ + L++ D++ALDFG LR + KGS GGHNGLK I++HL T +Y RLR+GIG DH G L D+VL F+ E+K+L V+ E D ++ W+
Sbjct: 6 FLITGLGNPGKKYENTRHNFGFMVVKAFAEKQGWTFKADSNLQGEIASGTVSESKVILLLPKTYMNLSGQSVRKVLDYYKIDLTHFLVVADDIALDFGTLRFREKGSSGGHNGLKDIESHLGTQEYQRLRLGIGDRDH----GYLEDYVLSPFSAEEQKDLPKVIEEGVDFLDKWL 177
BLAST of mRNA_F-serratus_M_contig128.2064.1 vs. uniprot
Match: A0A2A4YKD0_9BACT (Peptidyl-tRNA hydrolase n=1 Tax=Candidatus Aerophobetes bacterium TaxID=2030807 RepID=A0A2A4YKD0_9BACT) HSP 1 Score: 177 bits (449), Expect = 1.340e-48 Identity = 86/175 (49.14%), Postives = 114/175 (65.14%), Query Frame = 2
Query: 596 LVVGLGNPGKQYKFTRHNAGFLVAEELARRHGGTLKIRTAFQGEYCSISFRGKSVGILLPTTFMNNSGMSARKVVDFFKLPINSALILVDEVALDFGQLRLKAKGSPGGHNGLKSIQAHLKTPDYSRLRIGIGGEDHACGAGPLSDHVLGEFTRSEKKELDSVVAEACDAVEFWI 1120
L+VGLGNPGK+Y+ TRHN GFLV E+LA R G TL AF G + S GK V LLP+TFMN SG + R+ +D++ L LI+ D+VAL FG+LR++ KGS GGHNGLK ++ HL T +Y RLR+G+G G L ++V+G F EKK L + +A A+E W+
Sbjct: 7 LIVGLGNPGKKYEMTRHNMGFLVVEKLAERLGATLSPNKAFMGRFGKASIEGKKVYFLLPSTFMNLSGQAVRRCIDYYNLTKERLLIVSDDVALPFGKLRIREKGSAGGHNGLKDVERHLGTQEYQRLRVGVGSN----GDEDLDEYVVGNFNSHEKKLLPEIQIDAALALEEWV 177
BLAST of mRNA_F-serratus_M_contig128.2064.1 vs. uniprot
Match: A0A429XTI9_9BACI (Peptidyl-tRNA hydrolase n=1 Tax=Siminovitchia acidinfaciens TaxID=2321395 RepID=A0A429XTI9_9BACI) HSP 1 Score: 176 bits (446), Expect = 2.080e-48 Identity = 90/190 (47.37%), Postives = 127/190 (66.84%), Query Frame = 2
Query: 596 LVVGLGNPGKQYKFTRHNAGFLVAEELARRHGGTLKIRTAFQGEYCSISFRGKSVGILLPTTFMNNSGMSARKVVDFFKLPINSALILVDEVALDFGQLRLKAKGSPGGHNGLKSIQAHLKTPDYSRLRIGIGGEDHACGAGPLSDHVLGEFTRSEKKELDSVVAEACDAVEFWIEEDDTAKVMTRFNSR 1165
L+VGLGNPG +Y+ TRHN GF V EELA R G TL + F G Y ++ GK V +L P T+MN SG S R ++D+F++PI + L++ D++ L G++RL+ KGS GGHNG+KS HL TP+++R+RIGI + G + D+VLG+F+R E +E+ SV+ DA E W+E +VM RFNS+
Sbjct: 3 LIVGLGNPGSRYEKTRHNIGFEVIEELANRSGTTLN-ESKFNGLYANVRNNGKKVILLKPLTYMNLSGESIRPLMDYFRIPIENVLVIYDDLDLPVGKIRLRQKGSAGGHNGIKSTIQHLGTPEFNRIRIGI---NRPPGDMKVPDYVLGKFSREEWEEMQSVIQTCADACEEWMEAP-FLEVMNRFNSK 187
BLAST of mRNA_F-serratus_M_contig128.2064.1 vs. uniprot
Match: A0A7X5Q305_9BACT (Peptidyl-tRNA hydrolase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A7X5Q305_9BACT) HSP 1 Score: 175 bits (443), Expect = 5.640e-48 Identity = 88/187 (47.06%), Postives = 125/187 (66.84%), Query Frame = 2
Query: 596 LVVGLGNPGKQYKFTRHNAGFLVAEELARRHGGTLK---IRTAFQGEYCSISFRGKSVGILLPTTFMNNSGMSARKVVDFFKLPINSALILVDEVALDFGQLRLKAKGSPGGHNGLKSIQAHLKTPDYSRLRIGIGGEDHACGAGPLSDHVLGEFTRSEKKELDSVVAEACDAVEFWIEEDDTAKVM 1147
L+VGLGNPGK Y TRHN GF V + LA + G T + +R +G + R K +LLP T+MN SG++ RK D++K+PI +++ D+VAL FGQLRL+A+GS GGHNGL+SI+AHL T +YSRLRIG+ + G L+D+VL +F++ E++ L VVA A +A+E W+ E + A +
Sbjct: 4 LIVGLGNPGKTYDDTRHNVGFRVIKALAAKLGITFRPSLVRA--KGSLSEGNIRDKKAYLLLPLTYMNESGIAVRKCADYYKIPIERVIVVTDDVALPFGQLRLRAQGSCGGHNGLRSIEAHLGTQEYSRLRIGVSNREE----GDLADYVLSKFSQEEQRALPDVVASAIEALELWLTEGNEAAMQ 184
BLAST of mRNA_F-serratus_M_contig128.2064.1 vs. uniprot
Match: A0A2V3IG78_9FLOR (Peptidyl-tRNA hydrolase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IG78_9FLOR) HSP 1 Score: 175 bits (443), Expect = 7.120e-47 Identity = 86/198 (43.43%), Postives = 126/198 (63.64%), Query Frame = 2
Query: 566 PKAPPRGNNLLVVGLGNPGKQYKFTRHNAGFLVAEELARRHGGT-LKIRTAFQGEYCSISFRGKSVGILLPTTFMNNSGMSARKVVDFFKLPINSALILVDEVALDFGQLRLKAKGSPGGHNGLKSIQAHLKTPDYSRLRIGIGGEDHACGAGPLSDHVLGEFTRSEKKELDSVVAEACDAVEFWIEEDDTAKVMTRF 1156
P P RGN LLVVGLGNPG ++ TRHN GF + ++ A RH + + ++ QG+ +SV +L P+TFMN SG + R + + P+ + L++ D+++LD G +RL+AKGS GGHNGLKSIQ + +Y+RLRIG+G GA +D VLG F+RSEK+ LD V + +A+++W++E KV T+
Sbjct: 67 PPPPERGNKLLVVGLGNPGPRFDNTRHNVGFTLLDQYAARHSASKFRRESSVQGDVARFHLHDRSVMLLKPSTFMNASGRAVRAALKYIDAPVAALLVVTDDISLDLGDIRLRAKGSAGGHNGLKSIQQCVGGMNYARLRIGVGSPSR--GAEDWADFVLGSFSRSEKQVLDKVEWDVMEAIDYWVDEASIEKVQTQI 262 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig128.2064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig128.2064.1 >prot_F-serratus_M_contig128.2064.1 ID=prot_F-serratus_M_contig128.2064.1|Name=mRNA_F-serratus_M_contig128.2064.1|organism=Fucus serratus male|type=polypeptide|length=379bp MRGQRHFPSVFLVVMSSSYLLRHLAISTQAFVTNTFRSLATTSAGRSARAback to top mRNA from alignment at F-serratus_M_contig128:93382..96435- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig128.2064.1 ID=mRNA_F-serratus_M_contig128.2064.1|Name=mRNA_F-serratus_M_contig128.2064.1|organism=Fucus serratus male|type=mRNA|length=3054bp|location=Sequence derived from alignment at F-serratus_M_contig128:93382..96435- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig128:93382..96435- >mRNA_F-serratus_M_contig128.2064.1 ID=mRNA_F-serratus_M_contig128.2064.1|Name=mRNA_F-serratus_M_contig128.2064.1|organism=Fucus serratus male|type=CDS|length=2274bp|location=Sequence derived from alignment at F-serratus_M_contig128:93382..96435- (Fucus serratus male)back to top |