mRNA_F-serratus_M_contig1277.2042.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1277.2042.1
Unique NamemRNA_F-serratus_M_contig1277.2042.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1277.2042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1277contigF-serratus_M_contig1277:12552..13244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size693
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1277.2042.1prot_F-serratus_M_contig1277.2042.1Fucus serratus malepolypeptideF-serratus_M_contig1277 12641..12991 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929209.8031425-UTR-F-serratus_M_contig1277:12551..126401622929209.8031425-UTR-F-serratus_M_contig1277:12551..12640Fucus serratus maleUTRF-serratus_M_contig1277 12552..12640 +
1690962751.4775405-UTR-F-serratus_M_contig1277:12551..126401690962751.4775405-UTR-F-serratus_M_contig1277:12551..12640Fucus serratus maleUTRF-serratus_M_contig1277 12552..12640 +
1622929209.8403468-UTR-F-serratus_M_contig1277:12991..132441622929209.8403468-UTR-F-serratus_M_contig1277:12991..13244Fucus serratus maleUTRF-serratus_M_contig1277 12992..13244 +
1690962751.504175-UTR-F-serratus_M_contig1277:12991..132441690962751.504175-UTR-F-serratus_M_contig1277:12991..13244Fucus serratus maleUTRF-serratus_M_contig1277 12992..13244 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929209.8250163-CDS-F-serratus_M_contig1277:12640..129911622929209.8250163-CDS-F-serratus_M_contig1277:12640..12991Fucus serratus maleCDSF-serratus_M_contig1277 12641..12991 +
1690962751.4947784-CDS-F-serratus_M_contig1277:12640..129911690962751.4947784-CDS-F-serratus_M_contig1277:12640..12991Fucus serratus maleCDSF-serratus_M_contig1277 12641..12991 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1277.2042.1

>prot_F-serratus_M_contig1277.2042.1 ID=prot_F-serratus_M_contig1277.2042.1|Name=mRNA_F-serratus_M_contig1277.2042.1|organism=Fucus serratus male|type=polypeptide|length=117bp
MFVLSGTFPTWVQTCSGGVLSCSRFSWGDDSSAPALDLMSTSMLPSAILS
PASQFPPCGVLRCPVVSLSGSADGDVWSSCSSPLSKSPLLSSSLYLRASG
GKSAFGAYVVQICTKI*
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mRNA from alignment at F-serratus_M_contig1277:12552..13244+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1277.2042.1 ID=mRNA_F-serratus_M_contig1277.2042.1|Name=mRNA_F-serratus_M_contig1277.2042.1|organism=Fucus serratus male|type=mRNA|length=693bp|location=Sequence derived from alignment at F-serratus_M_contig1277:12552..13244+ (Fucus serratus male)
TGAAAAAGAATAACCGTACAGGCCTCTTCCGAAGCGCCAGGTTCTCTTCT
TTACCTCCGGGGTCGTACGTTTTGCTCTCTTCGCTGGTGATGTTTGTCTT
ATCCGGAACTTTTCCAACTTGGGTACAGACGTGTTCCGGTGGTGTATTGT
CTTGTTCCAGGTTTTCTTGGGGTGATGATTCATCTGCCCCTGCTTTGGAC
CTCATGTCGACGAGCATGCTGCCGTCGGCAATCCTCAGTCCAGCCTCCCA
ATTTCCCCCTTGCGGGGTACTCCGTTGTCCGGTTGTCTCGCTGTCCGGGT
CAGCTGATGGTGATGTTTGGAGTTCTTGTTCAAGCCCCTTGTCCAAGTCA
CCCCTGTTGTCCTCCTCACTATATTTACGCGCATCTGGCGGAAAATCAGC
ATTTGGTGCATATGTCGTGCAGATTTGTACGAAGATTTGAACAGTATTCA
CGGGCGTAGCATTTGCCTCTGCCTGAACCGCCTCATCGCGACTCCGCTTT
TCCACGTACTCCTTGATCGATTCCTGTTCTGCGTCCGTGAGTTCCATGTT
TACCTTTCCTTGCTGAAGTTCACGAGCAAACCTTTCCATCCTTTTTCGCC
TCCTTTCTGACGGGGAAAGGAAGATCGCGTCTCGCAGCTCGTCGACCTCA
CTTAACATATAGGCGGTGTACTCTTGAGGTGAGAAAAGAATAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1277:12552..13244+

>mRNA_F-serratus_M_contig1277.2042.1 ID=mRNA_F-serratus_M_contig1277.2042.1|Name=mRNA_F-serratus_M_contig1277.2042.1|organism=Fucus serratus male|type=CDS|length=702bp|location=Sequence derived from alignment at F-serratus_M_contig1277:12552..13244+ (Fucus serratus male)
ATGTTTGTCTTATCCGGAACTTTTCCAACTTGGGTACAGACGTGTTCCGG
TGGTGTATTGTCTTGTTCCAGGTTTTCTTGGGGTGATGATTCATCTGCCC
CTGCTTTGGACCTCATGTCGACGAGCATGCTGCCGTCGGCAATCCTCAGT
CCAGCCTCCCAATTTCCCCCTTGCGGGGTACTCCGTTGTCCGGTTGTCTC
GCTGTCCGGGTCAGCTGATGGTGATGTTTGGAGTTCTTGTTCAAGCCCCT
TGTCCAAGTCACCCCTGTTGTCCTCCTCACTATATTTACGCGCATCTGGC
GGAAAATCAGCATTTGGTGCATATGTCGTGCAGATTTGTACGAAGATTTG
AATGTTTGTCTTATCCGGAACTTTTCCAACTTGGGTACAGACGTGTTCCG
GTGGTGTATTGTCTTGTTCCAGGTTTTCTTGGGGTGATGATTCATCTGCC
CCTGCTTTGGACCTCATGTCGACGAGCATGCTGCCGTCGGCAATCCTCAG
TCCAGCCTCCCAATTTCCCCCTTGCGGGGTACTCCGTTGTCCGGTTGTCT
CGCTGTCCGGGTCAGCTGATGGTGATGTTTGGAGTTCTTGTTCAAGCCCC
TTGTCCAAGTCACCCCTGTTGTCCTCCTCACTATATTTACGCGCATCTGG
CGGAAAATCAGCATTTGGTGCATATGTCGTGCAGATTTGTACGAAGATTT
GA
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