mRNA_F-serratus_M_contig1276.2039.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1276.2039.1
Unique NamemRNA_F-serratus_M_contig1276.2039.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1276.2039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1276contigF-serratus_M_contig1276:165418..166614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score89.4
Seed ortholog evalue4.2e-15
Seed eggNOG ortholog3055.EDO96001
Hectar predicted targeting categoryother localisation
EggNOG OGs2CZUD@1,2SBPZ@2759,3819V@33090
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
Exons1
Model size1197
Cds size1197
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929209.5642266-CDS-F-serratus_M_contig1276:165417..1666141622929209.5642266-CDS-F-serratus_M_contig1276:165417..166614Fucus serratus maleCDSF-serratus_M_contig1276 165418..166614 -
1690962751.4319746-CDS-F-serratus_M_contig1276:165417..1666141690962751.4319746-CDS-F-serratus_M_contig1276:165417..166614Fucus serratus maleCDSF-serratus_M_contig1276 165418..166614 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1276.2039.1prot_F-serratus_M_contig1276.2039.1Fucus serratus malepolypeptideF-serratus_M_contig1276 165418..166614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1276.2039.1

>prot_F-serratus_M_contig1276.2039.1 ID=prot_F-serratus_M_contig1276.2039.1|Name=mRNA_F-serratus_M_contig1276.2039.1|organism=Fucus serratus male|type=polypeptide|length=399bp
KLHKNPVATRGITACCGSPMDGIAKIVNACLMALRPVMHALWRDKCSEIG
IFSDECWITSSGSEIIDIVRTANAAASSSLGPKYHHRFETFDFVAMYPNL
PDANLQEVMFKLLESTFKYQSQYGLQSIELRWGYANDHTCPVAREASWSS
KPPQPITTNSKSHVWVAHDTIFRWLKCVLNEGYVQFGPHMYRQTSGVFMG
TSPAPELANDFGFWHEYEFLTHMVNEYQQYGPGRYPFEFISQYACSTKRY
FDDIITVSLGHTIGPTLKDVISQSGVFFGMYPTTVRDFDGSVRPTPISIV
REQIGPSVHFLDMEIIQPLPGVCEVKMFDKRDNMPTLAAYRKFPHIETTI
SVRCKYAVLHSQLCRFSYRCTERQHFIKAAARLIREMYLQGYDLKLLRR
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mRNA from alignment at F-serratus_M_contig1276:165418..166614-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1276.2039.1 ID=mRNA_F-serratus_M_contig1276.2039.1|Name=mRNA_F-serratus_M_contig1276.2039.1|organism=Fucus serratus male|type=mRNA|length=1197bp|location=Sequence derived from alignment at F-serratus_M_contig1276:165418..166614- (Fucus serratus male)
AAACTGCATAAGAACCCGGTTGCAACTCGAGGTATTACAGCATGCTGTGG
ATCCCCTATGGATGGTATTGCCAAGATTGTTAACGCCTGCCTTATGGCAC
TGAGACCTGTTATGCATGCCTTGTGGCGTGATAAATGTTCAGAGATTGGG
ATCTTTTCAGATGAATGCTGGATTACATCGTCTGGGTCAGAAATCATCGA
TATAGTACGTACCGCTAATGCTGCAGCTAGCTCCTCCCTTGGGCCGAAGT
ACCATCATAGATTCGAAACTTTCGATTTCGTTGCAATGTACCCAAACTTG
CCTGATGCGAATTTACAAGAGGTTATGTTCAAGTTGCTAGAGTCTACCTT
TAAGTACCAAAGCCAATATGGGCTACAGTCAATAGAACTACGATGGGGTT
ATGCGAATGATCACACATGCCCAGTTGCTCGGGAAGCTTCTTGGTCCTCT
AAACCACCCCAACCAATTACTACTAACAGTAAAAGCCATGTATGGGTGGC
TCATGATACGATATTTAGATGGTTGAAATGCGTGCTTAATGAAGGTTATG
TCCAGTTTGGTCCACACATGTATCGACAGACTTCTGGGGTATTCATGGGT
ACATCTCCAGCTCCTGAACTAGCCAATGATTTCGGATTTTGGCATGAGTA
TGAATTTCTTACCCATATGGTAAATGAGTATCAACAGTATGGACCCGGTC
GTTACCCCTTTGAGTTCATTTCCCAATATGCGTGTAGTACTAAAAGGTAT
TTTGACGATATCATCACTGTCTCCCTTGGACATACGATTGGGCCTACGTT
GAAAGATGTTATCTCACAAAGTGGAGTTTTCTTTGGTATGTACCCTACTA
CGGTTCGGGACTTTGATGGGAGTGTACGACCTACGCCTATTTCGATTGTA
CGTGAGCAGATAGGCCCTAGTGTTCATTTTTTGGATATGGAAATAATACA
ACCACTACCGGGGGTCTGTGAAGTTAAAATGTTTGATAAGCGAGATAACA
TGCCTACGTTGGCTGCCTATAGAAAGTTCCCTCATATCGAGACAACCATC
TCGGTAAGATGTAAATACGCAGTGTTGCATAGTCAATTATGTCGTTTCTC
ATATCGTTGTACAGAAAGACAGCATTTTATCAAAGCTGCCGCTAGATTAA
TTAGAGAGATGTACTTGCAAGGCTATGATCTGAAACTTTTACGACGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1276:165418..166614-

>mRNA_F-serratus_M_contig1276.2039.1 ID=mRNA_F-serratus_M_contig1276.2039.1|Name=mRNA_F-serratus_M_contig1276.2039.1|organism=Fucus serratus male|type=CDS|length=2394bp|location=Sequence derived from alignment at F-serratus_M_contig1276:165418..166614- (Fucus serratus male)
AAACTGCATAAGAACCCGGTTGCAACTCGAGGTATTACAGCATGCTGTGG
ATCCCCTATGGATGGTATTGCCAAGATTGTTAACGCCTGCCTTATGGCAC
TGAGACCTGTTATGCATGCCTTGTGGCGTGATAAATGTTCAGAGATTGGG
ATCTTTTCAGATGAATGCTGGATTACATCGTCTGGGTCAGAAATCATCGA
TATAGTACGTACCGCTAATGCTGCAGCTAGCTCCTCCCTTGGGCCGAAGT
ACCATCATAGATTCGAAACTTTCGATTTCGTTGCAATGTACCCAAACTTG
CCTGATGCGAATTTACAAGAGGTTATGTTCAAGTTGCTAGAGTCTACCTT
TAAGTACCAAAGCCAATATGGGCTACAGTCAATAGAACTACGATGGGGTT
ATGCGAATGATCACACATGCCCAGTTGCTCGGGAAGCTTCTTGGTCCTCT
AAACCACCCCAACCAATTACTACTAACAGTAAAAGCCATGTATGGGTGGC
TCATGATACGATATTTAGATGGTTGAAATGCGTGCTTAATGAAGGTTATG
TCCAGTTTGGTCCACACATGTATCGACAGACTTCTGGGGTATTCATGGGT
ACATCTCCAGCTCCTGAACTAGCCAATGATTTCGGATTTTGGCATGAGTA
TGAATTTCTTACCCATATGGTAAATGAGTATCAACAGTATGGACCCGGTC
GTTACCCCTTTGAGTTCATTTCCCAATATGCGTGTAGTACTAAAAGGTAT
TTTGACGATATCATCACTGTCTCCCTTGGACATACGATTGGGCCTACGTT
GAAAGATGTTATCTCACAAAGTGGAGTTTTCTTTGGTATGTACCCTACTA
CGGTTCGGGACTTTGATGGGAGTGTACGACCTACGCCTATTTCGATTGTA
CGTGAGCAGATAGGCCCTAGTGTTCATTTTTTGGATATGGAAATAATACA
ACCACTACCGGGGGTCTGTGAAGTTAAAATGTTTGATAAGCGAGATAACA
TGCCTACGTTGGCTGCCTATAGAAAGTTCCCTCATATCGAGACAACCATC
TCGGTAAGATGTAAATACGCAGTGTTGCATAGTCAATTATGTCGTTTCTC
ATATCGTTGTACAGAAAGACAGCATTTTATCAAAGCTGCCGCTAGATTAA
TTAGAGAGATGTACTTGCAAGGCTATGATCTGAAACTTTTACGACGCAAA
CTGCATAAGAACCCGGTTGCAACTCGAGGTATTACAGCATGCTGTGGATC
CCCTATGGATGGTATTGCCAAGATTGTTAACGCCTGCCTTATGGCACTGA
GACCTGTTATGCATGCCTTGTGGCGTGATAAATGTTCAGAGATTGGGATC
TTTTCAGATGAATGCTGGATTACATCGTCTGGGTCAGAAATCATCGATAT
AGTACGTACCGCTAATGCTGCAGCTAGCTCCTCCCTTGGGCCGAAGTACC
ATCATAGATTCGAAACTTTCGATTTCGTTGCAATGTACCCAAACTTGCCT
GATGCGAATTTACAAGAGGTTATGTTCAAGTTGCTAGAGTCTACCTTTAA
GTACCAAAGCCAATATGGGCTACAGTCAATAGAACTACGATGGGGTTATG
CGAATGATCACACATGCCCAGTTGCTCGGGAAGCTTCTTGGTCCTCTAAA
CCACCCCAACCAATTACTACTAACAGTAAAAGCCATGTATGGGTGGCTCA
TGATACGATATTTAGATGGTTGAAATGCGTGCTTAATGAAGGTTATGTCC
AGTTTGGTCCACACATGTATCGACAGACTTCTGGGGTATTCATGGGTACA
TCTCCAGCTCCTGAACTAGCCAATGATTTCGGATTTTGGCATGAGTATGA
ATTTCTTACCCATATGGTAAATGAGTATCAACAGTATGGACCCGGTCGTT
ACCCCTTTGAGTTCATTTCCCAATATGCGTGTAGTACTAAAAGGTATTTT
GACGATATCATCACTGTCTCCCTTGGACATACGATTGGGCCTACGTTGAA
AGATGTTATCTCACAAAGTGGAGTTTTCTTTGGTATGTACCCTACTACGG
TTCGGGACTTTGATGGGAGTGTACGACCTACGCCTATTTCGATTGTACGT
GAGCAGATAGGCCCTAGTGTTCATTTTTTGGATATGGAAATAATACAACC
ACTACCGGGGGTCTGTGAAGTTAAAATGTTTGATAAGCGAGATAACATGC
CTACGTTGGCTGCCTATAGAAAGTTCCCTCATATCGAGACAACCATCTCG
GTAAGATGTAAATACGCAGTGTTGCATAGTCAATTATGTCGTTTCTCATA
TCGTTGTACAGAAAGACAGCATTTTATCAAAGCTGCCGCTAGATTAATTA
GAGAGATGTACTTGCAAGGCTATGATCTGAAACTTTTACGACGC
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