mRNA_F-serratus_M_contig1272.2025.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1272.2025.1
Unique NamemRNA_F-serratus_M_contig1272.2025.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1272.2025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1272contigF-serratus_M_contig1272:18849..24013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size1396
Cds size465
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929206.8563592-UTR-F-serratus_M_contig1272:18848..189251622929206.8563592-UTR-F-serratus_M_contig1272:18848..18925Fucus serratus maleUTRF-serratus_M_contig1272 18849..18925 +
1690962750.1795816-UTR-F-serratus_M_contig1272:18848..189251690962750.1795816-UTR-F-serratus_M_contig1272:18848..18925Fucus serratus maleUTRF-serratus_M_contig1272 18849..18925 +
1622929206.868583-UTR-F-serratus_M_contig1272:20848..209601622929206.868583-UTR-F-serratus_M_contig1272:20848..20960Fucus serratus maleUTRF-serratus_M_contig1272 20849..20960 +
1690962750.1938953-UTR-F-serratus_M_contig1272:20848..209601690962750.1938953-UTR-F-serratus_M_contig1272:20848..20960Fucus serratus maleUTRF-serratus_M_contig1272 20849..20960 +
1622929206.8802094-UTR-F-serratus_M_contig1272:21309..214161622929206.8802094-UTR-F-serratus_M_contig1272:21309..21416Fucus serratus maleUTRF-serratus_M_contig1272 21310..21416 +
1690962750.2053864-UTR-F-serratus_M_contig1272:21309..214161690962750.2053864-UTR-F-serratus_M_contig1272:21309..21416Fucus serratus maleUTRF-serratus_M_contig1272 21310..21416 +
1622929206.89049-UTR-F-serratus_M_contig1272:22313..223201622929206.89049-UTR-F-serratus_M_contig1272:22313..22320Fucus serratus maleUTRF-serratus_M_contig1272 22314..22320 +
1690962750.215775-UTR-F-serratus_M_contig1272:22313..223201690962750.215775-UTR-F-serratus_M_contig1272:22313..22320Fucus serratus maleUTRF-serratus_M_contig1272 22314..22320 +
1622929206.9234629-UTR-F-serratus_M_contig1272:23385..240131622929206.9234629-UTR-F-serratus_M_contig1272:23385..24013Fucus serratus maleUTRF-serratus_M_contig1272 23386..24013 +
1690962750.2448597-UTR-F-serratus_M_contig1272:23385..240131690962750.2448597-UTR-F-serratus_M_contig1272:23385..24013Fucus serratus maleUTRF-serratus_M_contig1272 23386..24013 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929206.900836-CDS-F-serratus_M_contig1272:22320..224911622929206.900836-CDS-F-serratus_M_contig1272:22320..22491Fucus serratus maleCDSF-serratus_M_contig1272 22321..22491 +
1690962750.2254758-CDS-F-serratus_M_contig1272:22320..224911690962750.2254758-CDS-F-serratus_M_contig1272:22320..22491Fucus serratus maleCDSF-serratus_M_contig1272 22321..22491 +
1622929206.9121916-CDS-F-serratus_M_contig1272:23091..233851622929206.9121916-CDS-F-serratus_M_contig1272:23091..23385Fucus serratus maleCDSF-serratus_M_contig1272 23092..23385 +
1690962750.2365065-CDS-F-serratus_M_contig1272:23091..233851690962750.2365065-CDS-F-serratus_M_contig1272:23091..23385Fucus serratus maleCDSF-serratus_M_contig1272 23092..23385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1272.2025.1prot_F-serratus_M_contig1272.2025.1Fucus serratus malepolypeptideF-serratus_M_contig1272 22321..23385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1272.2025.1

>prot_F-serratus_M_contig1272.2025.1 ID=prot_F-serratus_M_contig1272.2025.1|Name=mRNA_F-serratus_M_contig1272.2025.1|organism=Fucus serratus male|type=polypeptide|length=155bp
MHMIQYALIASTAAFLSVVKGIELEFFPFFETLAQDDSVFIVQHGPYNFS
ASCDSTAVRLDVFVQATQEDYIFSNQGSPVNLAAGDTESYDGVFRETAYG
NDYADGGFVSASGYYLGWNGQSVIGLHIVDGGTQPLFGDNVNCVIAGVVK
LIEE*
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mRNA from alignment at F-serratus_M_contig1272:18849..24013+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1272.2025.1 ID=mRNA_F-serratus_M_contig1272.2025.1|Name=mRNA_F-serratus_M_contig1272.2025.1|organism=Fucus serratus male|type=mRNA|length=5165bp|location=Sequence derived from alignment at F-serratus_M_contig1272:18849..24013+ (Fucus serratus male)
GAGACCTCGCCAACAGCCCGAATTTTACGATTTAGCGGTTTCGGACGGCA
AAAGCGAAACTCCACACCCGCCGCTAGGTGAACAACTGGTAGATACTATT
AATATGTAGGTGACCGAGAGACGATCGGTCGTCGGGGTAATATCCTGACC
AAAGGCGCAAGATTTACCCAGTAAAGCAAGATAGATAGGTGATTGCTCAA
CAACCTCACCCCCCCTCCCGTGAGCTCAGAATGCCCCCTGCACCGTTCCC
CTATCGTTTTCCTTAACTTTAGTGAGTACGGCCACCCGTGTCGTGGAAGG
CATCCATCCGAAGAGGGTGTACAGCAAAATATTAAAAACGAAAGAAAGCT
GACCTCGAAGCGGGGAAAAGCAGCCGACCAAGCAGCTGGCCAAAACCGTT
AAGAAAAACGTCGATCAATAGCGCATACCACATACATACCCCATACCGCA
TTAGACTAGAGCTGTTGTCCAAAATGGTACGGTCGGTCATAGAGCGAAAC
ATCACATGAAATACATAGCAATGCCGTTGTACATCATTTATGTTTCGTAA
TGTGTTACATTGATGTACTGGGTATATTCTGTTGTTTATCACCCGAAGTC
TTAAAAGCTGCTAGAGAGAGTACGAGTACCAGCGCGTGTTACAAACCGAT
AGGGTCCCAACCATTTCGGCGGCGGGCCCTTGGCGATCCGTTCCAAAATA
ATAAGTGGTCGTCGATATAGAGGACAAAAACGAGTAAGACATTGGGTGGT
CAAAGGCGATGTTGTTGTCGAGCAGCTCCCAAAAGTGCTGCACTCTCATT
GATGGAGATGCGTTTAGTGAGATATTTACCCAACAAGCATTATCATTTAC
CTCCATTTACGAGTCATCAAAAAGGATAGGTTGTCCGTGCTTGCTTCACA
TCAAAAGCTCACGGGCTGTCGGTCCGTTCCCTGGTTTCATTTTGTCGGCG
CAGAGCATTATTGGAGCTCTTTGCTTGGCATATTATGGCACTCTTAAAAA
AAATAATCGTTGCGACGTTGTCAATCGTAAGGCTCCTGATGGTCGGACGA
GAACAGAGATTAGCACAATGCTTTCCATTTCGCGACACCACGTTTCATGC
CTTCCCGTGGATTCCCTTTTCTTTCCTGGTTGCTCTATGACGACGGAATT
ATTGCGAAATGTTTTTTACGGCCGATAGTAAAGTCACGATTTCAACATTA
TTTACATGTGTTTGTGCGAATGATCCTTCTCTGCGTCTGTACGTTTTTCG
CTCCTTTAAGTATTAAACTGTTTCTCTGAGAGATTTTTGCATGTCGATAC
ATGTTCGAGAACAACAGCTGAGTTTCCTAGTTAGCAAAAAGTAAACAAGA
AACTCGAAGGGTAGTACACCTACACTATCAAGCATTCGCTCCCGTTCCTG
ACACGAGCGCGGCTGGGCCATCATCAAATGCCGGACAGATGTGCTAGAAA
CCAGCAATATTTCAATTCAGCTCTTGCGGGATATCTTTAAAAAAAATAAT
TAGCCCATTTTAGGCCCGAAGGTTGAACCATTCCTCCCTATTATTATTAT
TATTATTATTATTTTGTGCATGCACGGCAAATCAGTATTACTACTATTAC
ACTATTATTATAGTAGTCGGTTAAAATAACTACTACCTGGTATATCTTAT
GATGGCATCCCATTCAAAAGCAAAATGTATACTGTACTGCACTGTGCTGT
ACTGTAATGTACTGTACTGTACTGTACTGTACTCTACTCTACTGTTGTAC
TTGAAGTTCGAACTGTGTATGATAGAAGTTGTTTTCGTTCGTAACATCGG
TGGTCTGGTGGTGTTGCTTGTGGCAACCGTCACAATCAAGAATGGTCAAT
AACTGGACGTATATCATTACCTAGAGACGGGATAATACATCAGAAGAGGT
CGAGTTTGTGCCAACCATTACGTTTAGGACTGCAAAGTTTTAATGTATAC
GGAGTATGCTTTCCTAAAGTTGTGCGTACCACAAACAAACTATCCCGCAG
AGCAGAGTGGATCGCAACGGATAATCTCTGTCTCGGGGCTCTTTCCACCA
AGAGCTTTCTTTCACAGATACAACAAAAGTGATGTCCACGGCTGATACGT
ACGCCATACCAGGTATTTTCGAAAGTCCGAGCGAGGTGTAGCCGGCAGGT
TGCTTAGTTAACTTTTATTTGATCATTAGTGAACGTAAAGTACGCCGAAA
CAACTGATAAATGTTTAAGAAGCCTAACCTTTAACTCTAATCGTGCAATG
CTTTTTTATCACTGTATTTTTAATGGCAGTATGCAGCACGTACGGTCCTA
TGGTCGCTGCTGGTAGGTCGAAAGCCATCAGATAAGAGAACGCGCAAATA
CAAAAGTAATTATGCAGTTGCGCATGTTTCTGATAAGCCCAGCTCCGCAC
CTGACCTGCCCCTTCATCCTTTTCAGTCCCCCTAACGCACCTGATCACTC
CCTCAACACAGACACTAAGCTTGGACACGATCCGCTTTCTCTTAAGTCAA
GCAAGTGCCTCTTCAACCAAGGAACAGCTCACACGAAGGCAACACCTCGA
TCGTATCACTTCACCACACAGACAGGTGGGCCTAAGAAGGGTCTTCGACT
TCCACTGGGGGAGGTTCCCTTGTATGTAAAGATATCTCGCCCCAATGTTA
GATTGCGTGGATTCAGGATGGCGTGAAACTAGTAAGTGCAATTTAATTGG
CGTCGCAATCTGTAATTCGACATACACACTTGGCGCTGTGTTTTTGTACC
TCGACCTCAAATAACCAGAAACCCGCGTTTGCAGCGCTTGCCGCATGATA
TATACCGAGCACTACTGTTCAAATGTGTTTGAGGGAATATTTTGTGTTTA
GTCCAGCTGATGATCCTTACTTTGCTGTTTTTGTACCATGGCGCGTATTA
GATGGTGACATGCAGAGAGCTGGCTCCATAAAACATACCGGTACCTCGTA
AGCTCAAATAATGTGAACCATAAAATTGTAATCCTACTGAATGACCGCCC
CCGCAACAATAAGACGGATTGCTGCACCCATTGAATAGGCACCTTGAACC
GCAAAAACAATGATTGTACTGTATTTTATTTGACACCCACGCTTCTCCAA
AACCGAGTCGAGTTTACCTCACGGCGACATCAATTTTGGTGGAAGGCCCG
TTTTGTTCGCGAAACAAGTGTCACTATGGAATGCGCGCACTATGAAGAAC
TCTACAGCCTGATCTGAATCGAAAAGAAATGCGGCTGTCGGAATACCGGC
AGGCATCGATTGCATCCATCCCCACTAAACGCACATTCCACTCGCCATTT
TCCCCTTGTTCGGACCACTCGTCGCGCGTACCCTAAAACCTGTACAGACT
GGTTTAAATAAAAAAATACGCCCGTCGGAATACCGGCAGGCATCGACTGC
ACCCATCCCGCTAAACGCGCATTTTCCTTGCCCCTTTTGCCCTCGTCCGG
TCCATTCCTCATGTGCAGAGCCATGCATATGATCCAGTATGCCCTCATTG
CTTCCACCGCGGCATTCCTCAGCGTGGTAAAAGGAATCGAGCTGGAGTTT
TTCCCTTTCTTTGAAACTCTCGCCCAAGATGATAGCGTCTTCATCGTGCA
GCACGGACCATACAACTTTTCTGCCTCGTGCGATTCAACTGCGGTGAGCG
AAACAACATGTAGCCATCACTACAGCCTCGAGGGTAGTTCTAGAACCGCT
ACTACAACCTAATATTGTGCAATAGACTACGTGTTGTCTGATACGATGAA
ATTGTCCCTTTTGTTATTTGAGTAGTAAGCGTGTTCAATTCTTCATCTAC
TGATAATACGGCATTCTTCACGGCCGACGTTATTAGCGATGCTACCAGGC
AATTATATATTTTTTATTTCCTGTAGATTACGTTATTACGCCAATGAACT
CTTGTCGCACGGTACCATCAAAGTGGATGGTCGGGGAGTGTCTTGTATCA
AAAGGGTATTATTTGTCATGGAGTTCTAGGTGAAATGTGCTATATCTGGC
GCCCAGCGATTATTCTCGGACTGTTAAGATTCAGCATGTCGAAACCTGGA
GGTGAAGGATGAGGTGCGCCAGGCTCTTCAAGCAATCCATTTTTGTTTCG
GAAACATTTTCCCCTGACAAAGAGCGACCAAATGCTTGACTGCATGTAGC
GCTGGTCTTTCGGAGTAAAACAATGCTACACAAATCATCTATACCTAGTG
CATTAAACCTTTTGAATTTCTGCTGAATTGCTCCTTTCTACAGGTGAGGC
TGGATGTATTCGTCCAGGCAACTCAGGAGGATTACATATTCTCAAACCAG
GGAAGTCCCGTGAACCTCGCTGCAGGAGACACGGAATCGTATGACGGTGT
CTTCAGGGAGACTGCCTACGGAAACGACTATGCCGACGGTGGTTTCGTTA
GTGCCTCTGGCTACTACCTGGGCTGGAACGGCCAAAGCGTCATCGGACTT
CACATAGTGGACGGTGGTACCCAACCCCTATTCGGCGACAATGTTAACTG
CGTTATCGCCGGCGTTGTGAAGCTCATTGAGGAGTGATAAGTTGAATTGG
CAGGAAGGATTGCATCGCGAAAAGGATTCCAGCCGTTGAATGGCATCTCG
TAAAGGCGTTGATACACCCTACATCGAACGGTATTCTTGAGGGTAGATCA
TGTATCATCTCCAGAGTTATACCGTAAGAAAGTTTTGCTAATTCCAGCAG
ATCTAGCCCGTAGGATCTAGCCTTCAAACGTCTGTATATATATGTATATA
TTATTACTTTCCGCAGAGTAATGGGTCAACTCGGTAAGGTTGCAAATCTT
ATTCGTGGTCAGCTGAAAACAATGGACAAGTTTTTATCGTGTCCCCTTTC
GCGCCTGATAATTTGGTATCATCGCGAGAGAGGGTCTGTCGTCCCGTCCC
GCAACACTGTCTACACTCAGGCCGAACCTGGTGCTACTCATGGTGTTTTT
CTCACTTTTCGGGAGGGCGTTCTTTTGGTCTACATACCGTCAATCAACCT
CAGCTCAGTCCCAACTTCACGCAATTTCAATTACATCGTGGTCATTCGTT
GAGTCACGAATCCTCAAGGCGGGCCAAAAGCAATGCGTGCCTACGTTTCA
GATATCACCATGGGCCAATTTTTGTGCGTCTCTCTTTTCCTACAACCCCT
GTGTTGGTATATATA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1272:18849..24013+

>mRNA_F-serratus_M_contig1272.2025.1 ID=mRNA_F-serratus_M_contig1272.2025.1|Name=mRNA_F-serratus_M_contig1272.2025.1|organism=Fucus serratus male|type=CDS|length=930bp|location=Sequence derived from alignment at F-serratus_M_contig1272:18849..24013+ (Fucus serratus male)
ATGCATATGATCCAGTATGCCCTCATTGCTTCCACCGCGGCATTCCTCAG
CGTGGTAAAAGGAATCGAGCTGGAGTTTTTCCCTTTCTTTGAAACTCTCG
CCCAAGATGATAGCGTCTTCATCGTGCAGCACGGACCATACAACTTTTCT
GCCTCGTGCGATTCAACTGCGATGCATATGATCCAGTATGCCCTCATTGC
TTCCACCGCGGCATTCCTCAGCGTGGTAAAAGGAATCGAGCTGGAGTTTT
TCCCTTTCTTTGAAACTCTCGCCCAAGATGATAGCGTCTTCATCGTGCAG
CACGGACCATACAACTTTTCTGCCTCGTGCGATTCAACTGCGGTGAGGCT
GGATGTATTCGTCCAGGCAACTCAGGAGGATTACATATTCTCAAACCAGG
GAAGTCCCGTGAACCTCGCTGCAGGAGACACGGAATCGTATGACGGTGTC
TTCAGGGAGACTGCCTACGGAAACGACTATGCCGACGGTGGTTTCGTTAG
TGCCTCTGGCTACTACCTGGGCTGGAACGGCCAAAGCGTCATCGGACTTC
ACATAGTGGACGGTGGTACCCAACCCCTATTCGGCGACAATGTTAACTGC
GTTATCGCCGGCGTTGTGAAGCTCATTGAGGAGTGAGTGAGGCTGGATGT
ATTCGTCCAGGCAACTCAGGAGGATTACATATTCTCAAACCAGGGAAGTC
CCGTGAACCTCGCTGCAGGAGACACGGAATCGTATGACGGTGTCTTCAGG
GAGACTGCCTACGGAAACGACTATGCCGACGGTGGTTTCGTTAGTGCCTC
TGGCTACTACCTGGGCTGGAACGGCCAAAGCGTCATCGGACTTCACATAG
TGGACGGTGGTACCCAACCCCTATTCGGCGACAATGTTAACTGCGTTATC
GCCGGCGTTGTGAAGCTCATTGAGGAGTGA
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