mRNA_F-serratus_M_contig1270.2019.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1270.2019.1 vs. uniprot
Match: D7FS74_ECTSI (Ribonuclease Z n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS74_ECTSI) HSP 1 Score: 404 bits (1039), Expect = 4.220e-126 Identity = 207/292 (70.89%), Postives = 231/292 (79.11%), Query Frame = -2
Query: 1147 AEGEPLRLLMDAGGGTLGHMERQFGVEGAQREIRGLDCVWISHKHADHRTGLFRIIAAHHRARVAERLAVGNRSPEGTDPIAVVAPQVVLDFLEVCKNFSGEEMSFKGVCIRDTMRNDSWRGASGGNF--DGEGGRGGRKGAAMLLEGMRSVPVFHCYDAYGLVLQLWKGGAKLVYSGDTRPCDRLVRAGAGADLLVHEATFDDSMQQDAVSKSHCTTSEAVDVGRRMRAKEIVLTHFSQRYPRVPVLDPERAQHFCVAFDGMVLNRATISVLPAAARVLSQVLEAKSEEDD 2016
AEG PLRLL+DAG GTLGH ERQFG EGA REIRGLDCVWISHKHADH TGLFR+IA HHRAR A R A G E P+ VVAP VL F++ CK FSGE++S++ + +D R WRG SG G RG R+G + LL GMRSV V HC +AYGLV+QLW+ GAKLVYSGDTRPCDRLVRAG GA LL+HEATFDDSMQQDAVSK HCTTSEA++VGRRMRA E+VLTHFSQRYPRVPVLD ERAQHFCVAFDGMVLN T+ VLPAAA +LSQVLE K+E+ D
Sbjct: 604 AEGAPLRLLIDAGEGTLGHFERQFGREGALREIRGLDCVWISHKHADHHTGLFRLIAEHHRARQASRPA-GGGPREAAAPLVVVAPSAVLTFVKACKEFSGEDISYQAMRCKDLERAWHWRGGSGTRAGPSPSGRRGSRRGVSALLSGMRSVSVIHCREAYGLVVQLWEDGAKLVYSGDTRPCDRLVRAGTGAALLIHEATFDDSMQQDAVSKFHCTTSEALEVGRRMRAGEVVLTHFSQRYPRVPVLDTERAQHFCVAFDGMVLNGNTVGVLPAAANLLSQVLEPKAEDGD 894
BLAST of mRNA_F-serratus_M_contig1270.2019.1 vs. uniprot
Match: D7FS73_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS73_ECTSI) HSP 1 Score: 331 bits (848), Expect = 1.040e-105 Identity = 166/242 (68.60%), Postives = 207/242 (85.54%), Query Frame = 3
Query: 246 NPLSRDDPERARINSFITILAETPVTEWKPAILDEYLSSLLKGHLYRQAMAERLSNVRSGEEREALTRVDAFLTGYLGQERRKASRKKVSIILTAATEGAAQLDEVIQILAKEDLLDSDLTDYVTSLISGEENKCVQSTLLEVLRTVRDRIKVELETRSRPEIRTLAQALQIGDPRERKEFLQHAFTRLEDLDEFVKFVEEGVEYMGDDFGVSMRSNMPQENFDKMKMIYAEAAAIRRQYLQ 971
NPL+R+DPERAR+N+ ITILA TP+ EWKPA++DEY+ SLLK ++RQ M ERL+ VRSGEEREAL RVD+++TG+LG E RKASRKKVS+IL+AA EG +LD+ +Q L K DLLDSDLT+YV SLI+ EE KCV+S LL+VL+TVRDRI+ EL +RPEIRTLA+AL I D +RKEFLQHAF +LE+LDEFVKFVEEG++++GDDFG ++R+NMPQE+FDKMK IYAEA+A+RR YLQ
Sbjct: 32 NPLARNDPERARVNNLITILAGTPMAEWKPAVIDEYMESLLKRGIFRQTMDERLAKVRSGEEREALARVDSYMTGFLGHEWRKASRKKVSVILSAAAEGPMELDDCVQTLGKADLLDSDLTEYVASLITAEERKCVKSVLLKVLKTVRDRIQAELRMGARPEIRTLARALAIEDGAQRKEFLQHAFPKLEELDEFVKFVEEGIDFLGDDFGFAVRTNMPQEHFDKMKAIYAEASAMRRMYLQ 273
BLAST of mRNA_F-serratus_M_contig1270.2019.1 vs. uniprot
Match: A0A6H5JNW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNW5_9PHAE) HSP 1 Score: 328 bits (842), Expect = 3.320e-103 Identity = 174/288 (60.42%), Postives = 218/288 (75.69%), Query Frame = 3
Query: 162 RHSRRRKHRVSAATPWSMSSGHGSNEVL------------------NPLSRDDPERARINSFITILAETPVTEWKPAILDEYLSSLLKGHLYRQAMAERLSNVRSGEEREALTRVDAFLTGYLGQERRKASRKKVSIILTAATEGAAQLDEVIQILAKEDLLDSDLTDYVTSLISGEENKCVQSTLLEVLRTVRDRIKVELETRSRPEIRTLAQALQIGDPRERKEFLQHAFTRLEDLDEFVKFVEEGVEYMGDDFGVSMRSNMPQENFDKMKMIYAEAAAIRRQYLQ 971
R S R+ R T S ++ G VL NPL+R+DPERAR+N+ ITILA TP+ EWKPA++DEY+ SLLK ++RQ M ERL+ VRSGEEREAL RVD+++TG+LG E RKASRKKVS+IL+AA EG +LD+ +Q L K DLLDSDLT+YV SLI+ EE KCV+S LL+VL+TVRDRI+ EL +RPEIRTLA+AL I D +RKEFL HAF +LE+LDEFVKFVEEG++++GDDFG ++R+NMPQE+FDKMK IYAEA+A+RR YLQ
Sbjct: 97 RRSGHRRPRDPTVTAMSAAADEGDGSVLGPLRPLSPTEDGGDVFNPNPLARNDPERARVNNLITILAGTPMAEWKPAVIDEYMESLLKRGIFRQTMDERLAKVRSGEEREALARVDSYMTGFLGHEWRKASRKKVSVILSAAAEGPMELDDCVQTLGKADLLDSDLTEYVASLITAEERKCVKSVLLKVLKTVRDRIQAELRMGARPEIRTLARALAIKDGAQRKEFLLHAFPKLEELDEFVKFVEEGIDFLGDDFGFAVRTNMPQEHFDKMKAIYAEASAMRRMYLQ 384
BLAST of mRNA_F-serratus_M_contig1270.2019.1 vs. uniprot
Match: A0A835Z8U9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8U9_9STRA) HSP 1 Score: 201 bits (511), Expect = 2.840e-55 Identity = 119/253 (47.04%), Postives = 162/253 (64.03%), Query Frame = 3
Query: 228 GSNEVLNPLSRDDPERARINSFITILAETPVTEWKPAILDEYLSSLLK--GHLYRQAMAERLSNVRSGEEREALTRVDAFLTGYLGQERRKASRKKVSIILTAATEGAAQLDEVIQILAKEDLLDSDLTDYVTSLISGEENKCVQ----STLLEVLRTVRDRIKVELETRSRPEIRTLAQALQIGDPRERKEFLQHAFTRLEDLDEFVKFVEEGVEYMGDDFGVSMRSNMPQENFDKMKMIYAEAAAIRRQYL 968
G ++ + +S + +R RIN+FI+ L P + W P +L+ + LL+ +Y+Q MA R S R G+ER L RV+AFL GYL Q+RR+ASR KV +L AA G +LD + L+ +DSDL +YVT L+ EE K + S LL VLR VRDR++ EL T SRPEIR LA AL++ +R ++L+ AFT+LEDL+EF+ FV EGV Y ++ G+ +RSNMPQEN DKMK I EA +R YL
Sbjct: 82 GGGDIKSVISGGEEDRIRINNFISYLCNLPQSAWSPDVLESHTPDLLRDGSAVYKQTMALRASRARDGDERAKLERVEAFLNGYLQQQRRRASRVKVQEMLGAAAVGPQELDAAMAELSASKGIDSDLVEYVTGLVEAEEMKRMDTDGSSRLLAVLRAVRDRLQAELRTGSRPEIRILAYALRLPTALQRSDYLRSAFTKLEDLEEFLDFVTEGVGYF-ENGGIDVRSNMPQENLDKMKDIQREAERMREFYL 333
BLAST of mRNA_F-serratus_M_contig1270.2019.1 vs. uniprot
Match: M1CIC3_SOLTU (Ribonuclease Z n=11 Tax=Solanum TaxID=4107 RepID=M1CIC3_SOLTU) HSP 1 Score: 200 bits (508), Expect = 5.800e-51 Identity = 115/283 (40.64%), Postives = 162/283 (57.24%), Query Frame = -2
Query: 1183 LLMDAGGGTLGHMERQFGVEGAQREIRGLDCVWISHKHADHRTGLFRIIAAHHRARVAERLAVGNRSPEGTDPIAVVAPQVVLDFLEVCKNFSGEEMSFKGVCIRDTMRNDSWRGASGGNFDGEGGRGGRKGAAMLLEGM---RSVPVFHCYDAYGLVLQLWKG---------GAKLVYSGDTRPCDRLVRAGAGADLLVHEATFDDSMQQDAVSKSHCTTSEAVDVGRRMRAKEIVLTHFSQRYPRVPVLDPERAQHFCVAFDGMVLNRATISVLPAAARVL 1995
+L+D G GTLG ++R+FGV+GA ++GL C+WISH HADH GL RI+A H + + +P +P+ VV PQ + FL+ + EE+ + + RDT + SW + + G R + G+ SVPV HC AYG+VL+ G K+VYSGDTRPC LV+A GA LL+HEATF+D M ++A++K+H T EAV+ G A ++LTHFSQRYP++PV D C+AFD M +N A + +LP+ L
Sbjct: 545 ILLDCGEGTLGQLKRRFGVDGADEAVKGLKCIWISHIHADHHAGLARILALRH--------DLLSGTPH--EPLIVVGPQQLEIFLDRYQML--EELDMQFLDCRDTTES-SWEAFESNDHNDANGSASRLKNMLREAGLMALNSVPVIHCPQAYGIVLKFADRTNVIGKKIPGWKIVYSGDTRPCPELVKASHGATLLIHEATFEDGMLEEAIAKNHSTMGEAVEAGDAAGAYRVILTHFSQRYPKIPVFDETYMHKACIAFDLMSVNLADLPMLPSVVPYL 814
BLAST of mRNA_F-serratus_M_contig1270.2019.1 vs. uniprot
Match: A0A1S4CR46_TOBAC (Ribonuclease Z n=5 Tax=Nicotiana TaxID=4085 RepID=A0A1S4CR46_TOBAC) HSP 1 Score: 199 bits (505), Expect = 1.540e-50 Identity = 120/303 (39.60%), Postives = 164/303 (54.13%), Query Frame = -2
Query: 1132 LLMDAGGGTLGHMERQFGVEGAQREIRGLDCVWISHKHADHRTGLFRIIAAHHRARVAERLAVGNRSPEGTDPIAVVAPQVVLDFLEVCKNFSGEEMSFKGVCIRDTMRNDSWRGASGGNFDGEGGRGGRKGAAMLLEGM---RSVPVFHCYDAYGLVLQLWKG---------GAKLVYSGDTRPCDRLVRAGAGADLLVHEATFDDSMQQDAVSKSHCTTSEAVDVGRRMRAKEIVLTHFSQRYPRVPVLDPERAQHFCVAFDGMVLNRATISVLPAAARVLSQVLEAK---SEEDDVQEIV 1995
+L+D G GTLG ++R+FGVEGA ++GL C+WISH HADH GL RI+ R + N +P +P+ VV PQ + FL+ + +M F + RDT ++ SW + G R + G+ SVPV HC AYG+VL+ G K+VYSGDTRPC LV A GA + +HEATF+D M ++A++K+H T EAVD G A ++LTHFSQRYP++PV D CVAFD M +N A + +LP L + + E DDV +
Sbjct: 542 ILLDCGEGTLGQLKRRFGVEGADEAVKGLRCIWISHIHADHHAGLARILTL--------RRDLLNETPH--EPLIVVGPQQLEIFLDRYQMLEDLDMQF--LDSRDTTKS-SWEAFELNEDNDANGSASRLKNTLRESGLISLNSVPVIHCPQAYGIVLKAADKTNVIGKMIPGWKIVYSGDTRPCPELVEASRGATVFIHEATFEDGMVEEAIAKNHSTMGEAVDAGDAAGAYRVILTHFSQRYPKIPVFDESYMNKACVAFDLMSVNLADLPMLPRVLPYLKLLFRDEIVVHESDDVNSAI 831
BLAST of mRNA_F-serratus_M_contig1270.2019.1 vs. uniprot
Match: A0A5P1FTL7_ASPOF (Ribonuclease Z n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1FTL7_ASPOF) HSP 1 Score: 198 bits (504), Expect = 4.390e-50 Identity = 128/334 (38.32%), Postives = 173/334 (51.80%), Query Frame = -2
Query: 1129 LLMDAGGGTLGHMERQFGVEGAQREIRGLDCVWISHKHADHRTGLFRIIAAHHRARVAERLAVGNRSPEGTDPIAVVAPQVVLDFLEVCKNFSGEEMSFKGVCIRDTMRNDSWRGASGGNFD----------GEGGR--------GGRKGAAML---------------LEGMRSVPVFHCYDAYGLVLQLWKG---------GAKLVYSGDTRPCDRLVRAGAGADLLVHEATFDDSMQQDAVSKSHCTTSEAVDVGRRMRAKEIVLTHFSQRYPRVPVLDPERAQHFCVAFDGMVLNRATISVLPAAA---RVLSQVLEAKSEEDDVQEIVL 1995
LL+D G GTLG ++R+FGVEGA ++GL C+WISH HADH TGL RI+A R + P +P+ V+ P+ + FL+ + F DS+ +S D + R G AM LE + SVPV HC A+G+VL+ + G KLVYSGDTRPC L+ A A A +L+HEATF+DSM+++A++K+H TT EA+ VG RA IVLTHFSQRYP+VPV D C+AFD M +N A + VLP +VL + A E DD+Q++ +
Sbjct: 626 LLLDCGEGTLGQLKRRFGVEGADNAVKGLRCIWISHIHADHHTGLARILAL--------RSQLLKDVPH--EPLLVIGPRSLKRFLDAYARLEDLDALFLDCRHTTEASLDSFFSSSNSEHDKYQSQETTLFAQDSRMESFWKRPGSPVDIAMAEPLLIRLKSILRDAGLEALYSVPVIHCPQAFGVVLKAAERINSVRKTIPGWKLVYSGDTRPCQSLIDASADATVLIHEATFEDSMEEEAIAKNHSTTKEAIGVGSSARAYRIVLTHFSQRYPKVPVFDEAHMDRTCIAFDLMSINAADLPVLPKVLPYLKVLFRNEMAVDESDDIQDVAV 949
BLAST of mRNA_F-serratus_M_contig1270.2019.1 vs. uniprot
Match: A0A803QWV9_CANSA (Uncharacterized protein n=3 Tax=Cannabis sativa TaxID=3483 RepID=A0A803QWV9_CANSA) HSP 1 Score: 187 bits (475), Expect = 1.980e-49 Identity = 128/352 (36.36%), Postives = 180/352 (51.14%), Query Frame = -2
Query: 1129 LLMDAGGGTLGHMERQFGVEGAQREIRGLDCVWISHKHADHRTGLFRIIAAHHRARVAERLAVGNRSPEGTDPIAVVAPQVVLDFLEV-------------CKNFSGEEM-SFKGVC--------IRDTMRN-DSWRGASGGNFDGE-----GGRGGR------------------KGAAMLL-----EGMRSVPVFHCYDAYGLVLQLWKG---------GAKLVYSGDTRPCDRLVRAGAGADLLVHEATFDDSMQQDAVSKSHCTTSEAVDVGRRMRAKEIVLTHFSQRYPRVPVLDPERAQHFCVAFDGMVLNRATISVLPAAARVLSQVLE---AKSEEDDVQEIVL 1995
LL+D G GTLG ++R++GV+GA +RGL C+WISH HADH TGL RI+A H E L E +PI VV P+ + +L+ C++ + E + +FK + I D + D W+ + G + RG R K +L E + S PV HC A+G+VL+ + G K+VYSGDTRPC+ + A A +L+HEATF++ M ++AV+K+H TT EA++VG A I+LTHFSQRYP++PV D + C+AFD M +N A + VLP L + A E DDVQE +L
Sbjct: 55 LLLDCGEGTLGQLKRRYGVDGADDAVRGLRCIWISHIHADHHTGLARILALRH-----ELL-----KEEPHEPILVVGPRQLKRYLDAYQRLEDLNMMFLDCQHTTKESLDAFKSIIESSNDLISIGDPKSSKDIWKKPTDGQMAQKIDSTLFARGSRMQSYWQKPGSPIDNITEIKSLKKILGDAGLEALISFPVVHCPQAFGVVLKAAERTNSVGKSIPGWKVVYSGDTRPCEASIEASRDATILIHEATFEEGMVEEAVAKNHSTTEEAIEVGNAAGAYRIILTHFSQRYPKIPVFDETHMHNTCIAFDMMSVNVADLPVLPRVLPYLKMLFRNEMALEESDDVQESML 396
BLAST of mRNA_F-serratus_M_contig1270.2019.1 vs. uniprot
Match: A0A1S3ZEB0_TOBAC (Ribonuclease Z n=10 Tax=Nicotiana TaxID=4085 RepID=A0A1S3ZEB0_TOBAC) HSP 1 Score: 196 bits (499), Expect = 2.510e-49 Identity = 121/338 (35.80%), Postives = 169/338 (50.00%), Query Frame = -2
Query: 1126 LLMDAGGGTLGHMERQFGVEGAQREIRGLDCVWISHKHADHRTGLFRIIAAHHRARVAERLAVGNRSPEGTDPIAVVAPQVVLDFLEVCKNFSGEEMSF-----------------------KGVCIRDTMRNDSWRGASGGNFDGEGGRGGRKGAAML----------------LEGMRSVPVFHCYDAYGLVLQLWKG---------GAKLVYSGDTRPCDRLVRAGAGADLLVHEATFDDSMQQDAVSKSHCTTSEAVDVGRRMRAKEIVLTHFSQRYPRVPVLDPERAQHFCVAFDGMVLNRATISVLPAAARVLSQVLEAKSEEDDVQEIVLA 1995
+L+D G GTLG ++R+FG+EGA ++GL C+WISH HADH TGL RI+A R + N +P +P+ VV P+ + FL+ + +M F + C+ +N S A G + R G A LE + S PV HC AYG VL+ G K+VYSGDTRPC LV A GA +L+HEATF+D M ++A++++H TT EA++VG A IVLTHFSQRYP++PV D C+AFD M +N A + +LP L + + D+ +I +A
Sbjct: 681 ILLDCGEGTLGQLKRRFGIEGADEAVKGLRCIWISHIHADHHTGLARILAL--------RRDLLNGTPH--EPLIVVGPRQLKRFLDAYQKLEDLDMQFLDCRHTTEVSLKTFESNGDKDVSESACVPSDQKNGSTLFAKGSRMESYWKRPGSPVDAAAAFPLLKTLKEILREAGLEALISFPVIHCPQAYGAVLKAADRTNSTGKKIPGWKIVYSGDTRPCPELVEASCGATVLIHEATFEDGMVEEAIARNHSTTQEAIEVGDSAGAYRIVLTHFSQRYPKIPVFDETHMHKTCIAFDMMSVNLADLPMLPRVLPYLKLLFRDEMIADESDDIDVA 1008
BLAST of mRNA_F-serratus_M_contig1270.2019.1 vs. uniprot
Match: UPI0005C917F2 (zinc phosphodiesterase ELAC protein 2 n=1 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0005C917F2) HSP 1 Score: 196 bits (498), Expect = 2.760e-49 Identity = 120/332 (36.14%), Postives = 166/332 (50.00%), Query Frame = -2
Query: 1132 LLMDAGGGTLGHMERQFGVEGAQREIRGLDCVWISHKHADHRTGLFRIIAAHHRARVAERLAVGNRSPEGTDPIAVVAPQVVLDFLEVCKNFSGEEMSFKGVC-IRDTMRNDSWRGASGGNFDGEGGRGGR---------KGAAML-------------------------LEGMRSVPVFHCYDAYGLVLQLWKG---------GAKLVYSGDTRPCDRLVRAGAGADLLVHEATFDDSMQQDAVSKSHCTTSEAVDVGRRMRAKEIVLTHFSQRYPRVPVLDPERAQHFCVAFDGMVLNRATISVLPAAARVLSQVLEAKSEEDDVQEIV 1995
LL+D G GTLG ++R++GVEGA +RGL C+WISH HADH TGL RI+A R + P +P+ VV P+ + +L+ + +M F D N R G+ + KG+ M LE + SVPV HC A+G+VL+ K G KLVYSGDTRPC L+ A GA +L+HEATF+D M+ +A+ K+H TT EA+ VG ++LTHFSQRYP++PV D C+AFD M +N A + VLP L + + + D++ EI+
Sbjct: 629 LLLDCGEGTLGQLKRRYGVEGADNAVRGLRCIWISHIHADHHTGLARILAL--------RRTLLKGVPH--EPVLVVGPRQLKSYLDAYQRLEDLDMQFLDCRNTTDASLNAPSRATDSNKHHSSPGKDRQQKVDSTLFAKGSRMESYWKKPGSPVDDAVLSLQKMLSEAGLEALISVPVIHCSQAFGVVLKASKRLNSVGKVIPGWKLVYSGDTRPCPALIEASRGATILIHEATFEDGMEDEAIKKNHSTTEEAIGVGNSAGVYRVILTHFSQRYPKIPVFDEAHMHKTCIAFDLMSINMADLPVLPKVLPYLKMLFKNEMTVDELDEIL 950 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1270.2019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1270.2019.1 >prot_F-serratus_M_contig1270.2019.1 ID=prot_F-serratus_M_contig1270.2019.1|Name=mRNA_F-serratus_M_contig1270.2019.1|organism=Fucus serratus male|type=polypeptide|length=296bp MEARDTFPIEMDLKRGECWGNDLVFRHSRRRKHRVSAATPWSMSSGHGSNback to top mRNA from alignment at F-serratus_M_contig1270:139910..144587+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1270.2019.1 ID=mRNA_F-serratus_M_contig1270.2019.1|Name=mRNA_F-serratus_M_contig1270.2019.1|organism=Fucus serratus male|type=mRNA|length=4678bp|location=Sequence derived from alignment at F-serratus_M_contig1270:139910..144587+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1270:139910..144587+ >mRNA_F-serratus_M_contig1270.2019.1 ID=mRNA_F-serratus_M_contig1270.2019.1|Name=mRNA_F-serratus_M_contig1270.2019.1|organism=Fucus serratus male|type=CDS|length=1776bp|location=Sequence derived from alignment at F-serratus_M_contig1270:139910..144587+ (Fucus serratus male)back to top |