mRNA_F-serratus_M_contig127.2015.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig127.2015.1
Unique NamemRNA_F-serratus_M_contig127.2015.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig127.2015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig127contigF-serratus_M_contig127:755890..756852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size963
Cds size963
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929199.8218-CDS-F-serratus_M_contig127:755889..7568521622929199.8218-CDS-F-serratus_M_contig127:755889..756852Fucus serratus maleCDSF-serratus_M_contig127 755890..756852 +
1690962747.2712927-CDS-F-serratus_M_contig127:755889..7568521690962747.2712927-CDS-F-serratus_M_contig127:755889..756852Fucus serratus maleCDSF-serratus_M_contig127 755890..756852 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig127.2015.1prot_F-serratus_M_contig127.2015.1Fucus serratus malepolypeptideF-serratus_M_contig127 755890..756852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig127.2015.1

>prot_F-serratus_M_contig127.2015.1 ID=prot_F-serratus_M_contig127.2015.1|Name=mRNA_F-serratus_M_contig127.2015.1|organism=Fucus serratus male|type=polypeptide|length=321bp
MADFAEGQYLFFATVSRSWRKAWGRRPQVTSCLTKHISVSQLQCAFDCGL
PRSIIICNAVGRLGNLDLLRCARANNCPWDAWTCREVAMAGHLDLIRWAR
RHGCPWNTQTCWGAAERGHLHILQWARANGCPWSALTCWGAAEGGHLDVL
RWAREEGCPWNEHTCSRAAERGHLHVLRWARANGCPWDEETCWGAAESGH
LDVLKWAKVNGCPWDAWTCHGAASGGHLEVLRWARENGCPWGEDTCASAA
KNGHLDILRWARQNGCPWDRKTCSRAATEGCLRVVRWARENGCPWDATTC
AAAAANGHLDLLYWARHNGCP
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mRNA from alignment at F-serratus_M_contig127:755890..756852+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig127.2015.1 ID=mRNA_F-serratus_M_contig127.2015.1|Name=mRNA_F-serratus_M_contig127.2015.1|organism=Fucus serratus male|type=mRNA|length=963bp|location=Sequence derived from alignment at F-serratus_M_contig127:755890..756852+ (Fucus serratus male)
ATGGCAGACTTCGCGGAAGGCCAGTACCTCTTTTTCGCGACCGTCTCGAG
AAGCTGGAGAAAAGCCTGGGGGCGACGCCCGCAGGTCACCAGTTGCCTCA
CCAAACACATCTCGGTCTCTCAGCTGCAGTGCGCCTTCGACTGTGGCCTC
CCGCGCTCCATCATAATTTGCAATGCCGTGGGCCGTCTCGGAAACCTGGA
TCTTCTGCGGTGCGCGCGCGCAAATAACTGTCCATGGGATGCCTGGACCT
GCCGGGAGGTGGCTATGGCTGGACACCTGGACCTCATAAGGTGGGCCAGG
CGGCACGGGTGTCCGTGGAACACGCAAACGTGCTGGGGCGCCGCAGAGAG
GGGACACCTACACATTTTGCAATGGGCGAGGGCAAACGGCTGTCCCTGGT
CGGCGCTTACGTGTTGGGGGGCCGCTGAGGGGGGGCACCTCGACGTCCTT
CGGTGGGCGAGAGAAGAGGGTTGTCCCTGGAACGAGCACACGTGCAGCAG
GGCCGCAGAGAGGGGACACCTACATGTTCTGCGGTGGGCGAGGGCCAATG
GGTGCCCCTGGGACGAAGAGACTTGCTGGGGGGCGGCCGAGAGCGGCCAC
CTAGACGTTCTTAAGTGGGCAAAGGTGAACGGCTGCCCGTGGGACGCGTG
GACGTGCCATGGGGCTGCTTCGGGAGGGCACCTCGAAGTTCTTCGCTGGG
CGCGCGAAAACGGCTGCCCCTGGGGCGAGGACACGTGCGCATCAGCGGCT
AAAAACGGACACCTAGATATCCTTCGGTGGGCGAGGCAAAATGGATGTCC
ATGGGACCGCAAAACATGCTCAAGGGCCGCTACCGAGGGTTGTCTACGCG
TGGTGCGCTGGGCGAGAGAGAACGGCTGCCCCTGGGATGCGACGACCTGC
GCAGCCGCCGCTGCCAACGGACACCTTGATCTCCTGTACTGGGCCAGACA
TAACGGCTGCCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig127:755890..756852+

>mRNA_F-serratus_M_contig127.2015.1 ID=mRNA_F-serratus_M_contig127.2015.1|Name=mRNA_F-serratus_M_contig127.2015.1|organism=Fucus serratus male|type=CDS|length=1926bp|location=Sequence derived from alignment at F-serratus_M_contig127:755890..756852+ (Fucus serratus male)
ATGGCAGACTTCGCGGAAGGCCAGTACCTCTTTTTCGCGACCGTCTCGAG
AAGCTGGAGAAAAGCCTGGGGGCGACGCCCGCAGGTCACCAGTTGCCTCA
CCAAACACATCTCGGTCTCTCAGCTGCAGTGCGCCTTCGACTGTGGCCTC
CCGCGCTCCATCATAATTTGCAATGCCGTGGGCCGTCTCGGAAACCTGGA
TCTTCTGCGGTGCGCGCGCGCAAATAACTGTCCATGGGATGCCTGGACCT
GCCGGGAGGTGGCTATGGCTGGACACCTGGACCTCATAAGGTGGGCCAGG
CGGCACGGGTGTCCGTGGAACACGCAAACGTGCTGGGGCGCCGCAGAGAG
GGGACACCTACACATTTTGCAATGGGCGAGGGCAAACGGCTGTCCCTGGT
CGGCGCTTACGTGTTGGGGGGCCGCTGAGGGGGGGCACCTCGACGTCCTT
CGGTGGGCGAGAGAAGAGGGTTGTCCCTGGAACGAGCACACGTGCAGCAG
GGCCGCAGAGAGGGGACACCTACATGTTCTGCGGTGGGCGAGGGCCAATG
GGTGCCCCTGGGACGAAGAGACTTGCTGGGGGGCGGCCGAGAGCGGCCAC
CTAGACGTTCTTAAGTGGGCAAAGGTGAACGGCTGCCCGTGGGACGCGTG
GACGTGCCATGGGGCTGCTTCGGGAGGGCACCTCGAAGTTCTTCGCTGGG
CGCGCGAAAACGGCTGCCCCTGGGGCGAGGACACGTGCGCATCAGCGGCT
AAAAACGGACACCTAGATATCCTTCGGTGGGCGAGGCAAAATGGATGTCC
ATGGGACCGCAAAACATGCTCAAGGGCCGCTACCGAGGGTTGTCTACGCG
TGGTGCGCTGGGCGAGAGAGAACGGCTGCCCCTGGGATGCGACGACCTGC
GCAGCCGCCGCTGCCAACGGACACCTTGATCTCCTGTACTGGGCCAGACA
TAACGGCTGCCCCATGGCAGACTTCGCGGAAGGCCAGTACCTCTTTTTCG
CGACCGTCTCGAGAAGCTGGAGAAAAGCCTGGGGGCGACGCCCGCAGGTC
ACCAGTTGCCTCACCAAACACATCTCGGTCTCTCAGCTGCAGTGCGCCTT
CGACTGTGGCCTCCCGCGCTCCATCATAATTTGCAATGCCGTGGGCCGTC
TCGGAAACCTGGATCTTCTGCGGTGCGCGCGCGCAAATAACTGTCCATGG
GATGCCTGGACCTGCCGGGAGGTGGCTATGGCTGGACACCTGGACCTCAT
AAGGTGGGCCAGGCGGCACGGGTGTCCGTGGAACACGCAAACGTGCTGGG
GCGCCGCAGAGAGGGGACACCTACACATTTTGCAATGGGCGAGGGCAAAC
GGCTGTCCCTGGTCGGCGCTTACGTGTTGGGGGGCCGCTGAGGGGGGGCA
CCTCGACGTCCTTCGGTGGGCGAGAGAAGAGGGTTGTCCCTGGAACGAGC
ACACGTGCAGCAGGGCCGCAGAGAGGGGACACCTACATGTTCTGCGGTGG
GCGAGGGCCAATGGGTGCCCCTGGGACGAAGAGACTTGCTGGGGGGCGGC
CGAGAGCGGCCACCTAGACGTTCTTAAGTGGGCAAAGGTGAACGGCTGCC
CGTGGGACGCGTGGACGTGCCATGGGGCTGCTTCGGGAGGGCACCTCGAA
GTTCTTCGCTGGGCGCGCGAAAACGGCTGCCCCTGGGGCGAGGACACGTG
CGCATCAGCGGCTAAAAACGGACACCTAGATATCCTTCGGTGGGCGAGGC
AAAATGGATGTCCATGGGACCGCAAAACATGCTCAAGGGCCGCTACCGAG
GGTTGTCTACGCGTGGTGCGCTGGGCGAGAGAGAACGGCTGCCCCTGGGA
TGCGACGACCTGCGCAGCCGCCGCTGCCAACGGACACCTTGATCTCCTGT
ACTGGGCCAGACATAACGGCTGCCCC
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