mRNA_F-serratus_M_contig127.2012.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig127.2012.1 vs. uniprot
Match: D8LLJ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLJ6_ECTSI) HSP 1 Score: 242 bits (617), Expect = 1.400e-77 Identity = 109/147 (74.15%), Postives = 127/147 (86.39%), Query Frame = 3
Query: 60 MVFYQKIVALRPRTNPSDLTAIFRRLASGILDEGGVVRAVANHGIRVLPYRFHSRHELREGDNRWFGSARWASVYYDANPTVVQHMETQLWAEDKVLRVTTRRPVTKMDRITSAHERSNPWDMEWRRRNGIEEPTHSRRKAPRKNKW 500
MVFYQ+IV LRPRTNP+DLT IFRR A+ IL+EGGVVR+VANHG+RVLPYRFHS+H+++E D+RWF S RWAS YYDA+P V + ME QLWAEDKV+RV+TRRP TKMDRI S HERSNPWDMEWR RNGIE+P H+RR+ P K KW
Sbjct: 1 MVFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPATKMDRIASTHERSNPWDMEWRNRNGIEQPVHNRRRTPPKKKW 147
BLAST of mRNA_F-serratus_M_contig127.2012.1 vs. uniprot
Match: A0A835Z0N7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0N7_9STRA) HSP 1 Score: 107 bits (267), Expect = 1.220e-24 Identity = 49/124 (39.52%), Postives = 78/124 (62.90%), Query Frame = 3
Query: 60 MVFYQKIVALRPRTNPSDLTAIFRRLASGILDEGGVVRAVANHGIRVLPYRFHSRHELREGDNRWFGSARWASVYYDANPTVVQHMETQLWAEDKVLRVTTRRPVTKMDRITSAHERSNPWDME 431
M FYQ + + RT P LT ++RRL + +L++GG+VR V NHG++ L YRF +R + +NR+ RW S+Y+DA P + ++ L +D LR T +PV KM+ I++ H+ +NPW+ +
Sbjct: 1 MPFYQNVFTCKWRTPPEQLTRLYRRLCNTVLEDGGMVRCVENHGVKDLAYRFRARTAMSGSENRYHTRGRWVSMYFDARPETLDKIDADLKMQDFYLRSNTIKPVVKMNWISTRHK-TNPWERD 123
BLAST of mRNA_F-serratus_M_contig127.2012.1 vs. uniprot
Match: A0A1E7FMF6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FMF6_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 4.110e-20 Identity = 44/121 (36.36%), Postives = 80/121 (66.12%), Query Frame = 3
Query: 60 MVFYQKIVALRPRTNPSDLTAIFRRLASGILDEGGVVRAVANHGIRVLPYRFHSRHELREGDNRWFGSARWASVYYDANPTVVQHMETQLWAEDKVLRVTTRRPVTKMDRITSAHERSNPW 422
MVFY+ +++ + T+ LTA+ ++++ +++ GG+VR++ NHG+R P+RF +++ R++ R+ S+YYD+NPT ++ +ET L D+VLRVT + +K+D I HE+ NP+
Sbjct: 1 MVFYECVLSTKHTTHFKALTALMKQVSLKVVENGGIVRSIQNHGLRTFPHRFKAKYPDYLTQQRYYEQGRFISIYYDSNPTTLKQVETVLTMNDQVLRVTHLKSRSKLDWINYKHEK-NPY 120
BLAST of mRNA_F-serratus_M_contig127.2012.1 vs. uniprot
Match: A0A7S2IGM9_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IGM9_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 7.880e-19 Identity = 44/121 (36.36%), Postives = 78/121 (64.46%), Query Frame = 3
Query: 60 MVFYQKIVALRPRTNPSDLTAIFRRLASGILDEGGVVRAVANHGIRVLPYRFHSRHELREGDNRWFGSARWASVYYDANPTVVQHMETQLWAEDKVLRVTTRRPVTKMDRITSAHERSNPW 422
MVFY+ ++ + + LT + + ++S +++ GG+VR V NHGIR LP+RF +++ +EG NR++ R+ SV+YDA+P V+ +E ++ +D++LR T + K+ I A E+ NP+
Sbjct: 1 MVFYECVLTAKNTAPFTSLTKLMKTISSTVVENGGIVRTVQNHGIRNLPHRFKAKYPDKEG-NRYYKKGRFISVWYDASPRVLAKVENEIRLDDQILRHTHLKARNKLWYINIASEKKNPY 120
BLAST of mRNA_F-serratus_M_contig127.2012.1 vs. uniprot
Match: K0TLA5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TLA5_THAOC) HSP 1 Score: 91.3 bits (225), Expect = 1.160e-18 Identity = 44/121 (36.36%), Postives = 77/121 (63.64%), Query Frame = 3
Query: 60 MVFYQKIVALRPRTNPSDLTAIFRRLASGILDEGGVVRAVANHGIRVLPYRFHSRHELREGDNRWFGSARWASVYYDANPTVVQHMETQLWAEDKVLRVTTRRPVTKMDRITSAHERSNPW 422
MVFY+ ++ + T+ + LT++ + ++ I++ GG+VR++ NHGIR LP+RF S++ REG NR++ R+ SV+YD+NP + +ET L +++LR T R + + + E NP+
Sbjct: 39 MVFYECLMTAKNTTHYNLLTSLMKEVSHKIVENGGIVRSIQNHGIRQLPHRFKSKYADREG-NRYYEKGRFISVFYDSNPVTAKQVETILNLNEEILRNTHLRASNRFNEVNDLLESRNPY 158
BLAST of mRNA_F-serratus_M_contig127.2012.1 vs. uniprot
Match: A0A6S8YXD6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8YXD6_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 1.220e-18 Identity = 43/121 (35.54%), Postives = 78/121 (64.46%), Query Frame = 3
Query: 60 MVFYQKIVALRPRTNPSDLTAIFRRLASGILDEGGVVRAVANHGIRVLPYRFHSRHELREGDNRWFGSARWASVYYDANPTVVQHMETQLWAEDKVLRVTTRRPVTKMDRITSAHERSNPW 422
MVFY+ ++ + + + LT + ++S +++ GG+VR V NHGIR LP+RF +R+ +EG NR++ R+ SV+YDA+P + +E ++ +D++LR T + K+ I + +E+ NP+
Sbjct: 1 MVFYECVLTAKNTASFASLTNTVKSISSIVVESGGIVRTVQNHGIRNLPHRFKARYPDKEG-NRYYKEGRFISVWYDASPRTLNQVENEIRLDDQILRYTHLKARNKLWYINNPNEKKNPY 120
BLAST of mRNA_F-serratus_M_contig127.2012.1 vs. uniprot
Match: A0A7S2MAY0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2MAY0_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 4.380e-18 Identity = 42/124 (33.87%), Postives = 80/124 (64.52%), Query Frame = 3
Query: 60 MVFYQKIVALRPRTNPSDLTAIFRRLASGILDEGGVVRAVANHGIRVLPYRFHSRHELREGDNRWFGSARWASVYYDANPTVVQHMETQLWAEDKVLRVTTRRPVTKMDRITSAHERSNPWDME 431
MVFY+ ++ + + ++LTA+ + ++ I++ GG+VR++ NHG+R LP+RF +++ REG NR++ R+ SV+YDA+P +++ +E L ++++LR T + K + + E NP+ E
Sbjct: 1 MVFYECLMTAKNTAHYNNLTALMKDISLKIVNNGGIVRSIQNHGVRQLPHRFRAKYADREG-NRYYEKGRFVSVFYDASPGIMRQVEGILNLDEQILRNTHLKGRNKFMDVNNVREAKNPYIQE 123
BLAST of mRNA_F-serratus_M_contig127.2012.1 vs. uniprot
Match: A0A1Z5JK56_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JK56_FISSO) HSP 1 Score: 88.6 bits (218), Expect = 5.990e-18 Identity = 48/121 (39.67%), Postives = 76/121 (62.81%), Query Frame = 3
Query: 60 MVFYQKIVALRPRTNPSDLTAIFRRLASGILDEGGVVRAVANHGIRVLPYRFHSRHELREGDNRWFGSARWASVYYDANPTVVQHMETQLWAEDKVLRVTTRRPVTKMDRITSAHERSNPW 422
MVFY+ +V + + LT + + ++ I++ GG+VRAV NHGIR LP+RF + + REG NR++ R+ S+YYDANP + ++T L +++VLR T R + +D I +R NP+
Sbjct: 1 MVFYECVVTAKNTAHFHTLTNLVKLVSHEIVEGGGIVRAVHNHGIRTLPHRFKATYPDREG-NRYYSKGRFFSIYYDANPDTMSQVDTILKMDEEVLRSTHLRARSTLDFINLREDR-NPY 119
BLAST of mRNA_F-serratus_M_contig127.2012.1 vs. uniprot
Match: A0A7S1YM88_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YM88_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 2.710e-17 Identity = 43/121 (35.54%), Postives = 74/121 (61.16%), Query Frame = 3
Query: 60 MVFYQKIVALRPRTNPSDLTAIFRRLASGILDEGGVVRAVANHGIRVLPYRFHSRHELREGDNRWFGSARWASVYYDANPTVVQHMETQLWAEDKVLRVTTRRPVTKMDRITSAHERSNPW 422
MVFY+ ++ + LT++ + ++ +++ GG+VR+V NHGIR L +RF +RH R+G R F R+ SVYYD++P + + + L ++ VLR T R K+D I + +++ NP+
Sbjct: 1 MVFYECVITAKNTAPFYQLTSLMKEISLKVVENGGIVRSVQNHGIRDLAHRFRARHPDRDG-TRLFQKGRFISVYYDSSPAIQEEVGEILVMDENVLRATHLRARNKLDTINNPYQKKNPY 120
BLAST of mRNA_F-serratus_M_contig127.2012.1 vs. uniprot
Match: A0A6T7JZ88_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A6T7JZ88_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 7.250e-16 Identity = 41/121 (33.88%), Postives = 76/121 (62.81%), Query Frame = 3
Query: 60 MVFYQKIVALRPRTNPSDLTAIFRRLASGILDEGGVVRAVANHGIRVLPYRFHSRHELREGDNRWFGSARWASVYYDANPTVVQHMETQLWAEDKVLRVTTRRPVTKMDRITSAHERSNPW 422
MVFY+ ++ + +LT + + ++ +++ GG+VR+V NHGIR LP+RF +++ +EG NR++ R+ SV+YDA+P + ++ L +++VLR T +P K+ +E+ NP+
Sbjct: 1 MVFYECVLTAKNTAPFMNLTNLMKTVSLKVVERGGIVRSVQNHGIRDLPHRFKAKYPDKEG-NRYYKKGRFISVFYDASPHAREEVQAILDLDEEVLRNTHLKPRNKVTYANIVNEKKNPY 120 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig127.2012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig127.2012.1 >prot_F-serratus_M_contig127.2012.1 ID=prot_F-serratus_M_contig127.2012.1|Name=mRNA_F-serratus_M_contig127.2012.1|organism=Fucus serratus male|type=polypeptide|length=148bp MVFYQKIVALRPRTNPSDLTAIFRRLASGILDEGGVVRAVANHGIRVLPYback to top mRNA from alignment at F-serratus_M_contig127:668728..671599+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig127.2012.1 ID=mRNA_F-serratus_M_contig127.2012.1|Name=mRNA_F-serratus_M_contig127.2012.1|organism=Fucus serratus male|type=mRNA|length=2872bp|location=Sequence derived from alignment at F-serratus_M_contig127:668728..671599+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig127:668728..671599+ >mRNA_F-serratus_M_contig127.2012.1 ID=mRNA_F-serratus_M_contig127.2012.1|Name=mRNA_F-serratus_M_contig127.2012.1|organism=Fucus serratus male|type=CDS|length=888bp|location=Sequence derived from alignment at F-serratus_M_contig127:668728..671599+ (Fucus serratus male)back to top |