mRNA_F-serratus_M_contig127.2005.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig127.2005.1 vs. uniprot
Match: D7FK56_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK56_ECTSI) HSP 1 Score: 665 bits (1715), Expect = 9.910e-213 Identity = 607/1389 (43.70%), Postives = 740/1389 (53.28%), Query Frame = 1
Query: 1 MTSKDGVASLSVPESCGGDGEGVKPTAEDVSRVDVHETNSVQILNVINEGIRSPKEVDYLSYGVSRPSTLLSLSLHSNRVSSLEGLSSMTALTSLNLSSNELDGATIRSCAPKLGALSCXXXXXXXXXXXXALLGLPFLPRLSRLLVPYNRLASLDGVQVLASSLTFLDARDNRISGPTGSHAPHLAALGRLKNLLLMSPGGGQR---NPVCYCPDYREGVLSAAPWLQTFDG-----------TPTCPLRVAP-----------------------DSPAHIKPAPRRDAVSGGRTARGENSRPRSGSRGEDPEAGAESERRREDTVGAAPEEVVPTPRIDAVAGRFLRRRGRGQPKRDSRWCLPDEGRGVVESSVEYSDGDGSPRAXXXXXXXXXRLAGDDGWSESK-EGVDRSDVGPAEHPE----DSVGRYVIGVSRSIET-----RARVGREREQGV-LGDDEELSGHGEGSGEDVAAEEQRLLNRLRSVAQEARLEAMDSRLQDMHVSWC---AKDAVEARRATAAAXXXXXXXXXXXXXXXVAARRTDIVTAGKLQRKKDDRHNLLQVDSNDGGGIPRT-QGAFGRGAARSRGVVGSKLATRPYNRESRRIWRRDTASETLPPSGIAPALDSNVTLSRNATLEASPLRRGLEDLTIRPHCCSS------------GGPALAPGVPGNSATAFSMSTSSNRVARRTTTSSPAR---ATGIARPRRLVGTSSL----LGSPGRGATAEASAVVGGTSMGXXXXXXXXXXXXXAALAGVTRRRSALCFLRWARHTERARAEATVAAAEAALAEARADAGRERLAWESLEKSLEASAATREREARETAEEEGREGVRIAQAACRSAEEAAVVLRRKLAQAEXXXXXXXXXXXXXXXXXXXXXXRGRAGAESEAATVVLGARA----ERLEEQLHGKARGEEEAEEECRRVRALLREVESRCRGLQDQVEXXXXXXKRVSEAAEDARTRAEAEAEKKVATAVEAEREPALALKRKLKETEAAARASTAVLREAEERQARGRRAVEELAQLARHQKAALQISRAEVGAARTEADKARRGAAEAKDKASRLTTEMQEQMKFLETRDEELAALRRSRRQEEKRLQAEKDRAQAFEKDAKEFESKLEASARAQGDLRAALMVKDKVLEDREKLVKELRDREEDALSEARTWRDRLDAHQSEADLQLDAARDEISELQAQVVELSGVEEQLRDVFKELRRYRKR------GAG-GSDEDDREGVHSRGKGPGGKDDAGG--LTAVAAVTAAAKAVEEELREQLGAKDEALRYVESELLSMKSLFEGKEASLRQELGSERNKLAREAAEWKRRAEEXXXXXXXXXXXAREQASTVADLRSSLWAGECRTKELE 3915
M+S GV L+ P G G A +VSRVDVHE ++ ++LN +NE I S EVD+L+YG++RPSTL+SLSLHSNR+SSLEG +SMTALT+LNLSSNELDG IRSCAP LG L+ LLGLPFLP L RLLVPYNRL SLDGVQ LASSLT LDARDNRI+GP G+HAPHLAALGRL++L L S G G+R NP+C C YRE V +AA L+T DG T P A D+PA +P G R A E + P + T APEEV PR DA+AGRF R S R + D GWSE +G+ S H E DS G V+G + ++T RA GR ++ G G + SG E GEDVA EE LL+RLRSVAQEARLE MDSRLQD+H A+ A A RATAA AA T G + Q G +PRT +G RS G + +A RP W R + +G + VT A + G +T R CC GG PG PG S+ +A +T ++ ++G AR RR+ T S L + G G + +S GG S+G AAL+G R A F RWAR T+RARA + ALA AR +A RER AWES++ +LE SAA REREARE+A+EEGRE +R AACRSAEE A L +LAQAE RA ++EA+ ARA ERLE QL GKAR E EAEEECRRVR+LLRE XXXXXX R S A+DAR RA +A+KK+ +AV++ER+ + LK KL+ E AARA+ ARGRRA ELA LAR QKAALQ++ E+ AARTE A+ LAA R++RRQ ++ L+A RA+A +++ ++ E+K+ ASA AQGDLRAA+MVKDKVLEDREKLVKELR RE DAL+EA+ WRDRLDA Q+E+D +LDAAR+E+SEL+AQVV LSGVE+QLR+VFKELRRYRKR G G G DDR+G S G G + + LTAVAAVTAAAKAVEEELR QL AKD+ALRYVE+ELL MKSLFE KEA LRQELG ER+KLA E ++R E+ AR+ AST LRSSL G+ R+KE++
Sbjct: 1 MSSPPGVVVLASPTKERGSGG----AAAEVSRVDVHEMSAARVLNAMNENIGSLGEVDFLAYGIARPSTLVSLSLHSNRLSSLEGFASMTALTALNLSSNELDGEAIRSCAPHLGPLASLESLDLSCNRIDGLLGLPFLPGLRRLLVPYNRLTSLDGVQALASSLTHLDARDNRIAGPAGAHAPHLAALGRLESLALASVGRGRRVQPNPICACRGYREDVFAAARSLKTLDGENASFFFEDRETAATPAEAAAXXXXXXXXXXXXXXXXXXXDVTEDTPAASEPG-------GDRNAAAETAIPVAAV-----------------TALVAPEEVPIAPRFDALAGRFRHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXS------RRVAVQSAGVESSSSDAGWSEGDGDGLRES------HAEGFDADSFG--VVGSAGRVDTEETAARAVPGRRKDGGGGRGIFDGESGVREALGEDVA-EEHGLLSRLRSVAQEARLEVMDSRLQDLHDKQAQDTARHAATAARATAALRRSVSNTTRGQAHEAGAAGPT---RRGSRSNPWAQHGDPQQRGVAGKGVVPRTVRGTGSTVPLRSNG--NTAVADRPVR------WTRASGDCAAIGNGGFGSR-GGVTQPPAAVARPEDVCGGEASVTARCSCCGGQDASELTLQAARGGGCTPPGEPGGVGAKPLESSGRRHLADASTQANRGPGPLSSGPARTRRVSVTPSAGSFALWNAGTGKSG-SSPSTGGLSIGGAVAAAALVGATAAALSGHDGHRLASSFSRWARDTDRARAXXXXXXXDEALAGARREAERERKAWESVQAALEGSAAAREREARESAQEEGREEMRSMAAACRSAEETASSLELRLAQAETDAAAAVLGQQQAQADVI------RAKTDAEASVKASEARATAEMERLEGQLRGKARAESEAEEECRRVRSLLREXXXXXXXXXXXXXXXXXXXXRASTDADDARRRAALDADKKLVSAVDSERDRIVVLKHKLEAAEDAARAAXXXXXXXXXXXARGRRAAAELADLAREQKAALQVANGEIRAARTERIGAQEAMXXXXXXXXXXXXXXXXXXXXXXXXXXTLAAERQARRQCQQELEAAVARAKALDQEKEDAEAKMMASAIAQGDLRAAVMVKDKVLEDREKLVKELRLREGDALAEAQAWRDRLDAQQAESDQRLDAAREEVSELEAQVVALSGVEDQLREVFKELRRYRKRHESEDDGKGDGXXXDDRQGGESSRDGSGRRQRSCSTELTAVAAVTAAAKAVEEELRAQLEAKDQALRYVENELLGMKSLFESKEACLRQELGEERDKLAGEVGVLRQRLEQAEESRAAAEESARQHASTSGALRSSLRNGDRRSKEVQ 1327
BLAST of mRNA_F-serratus_M_contig127.2005.1 vs. uniprot
Match: A0A6H5KTU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTU3_9PHAE) HSP 1 Score: 236 bits (601), Expect = 1.680e-61 Identity = 287/794 (36.15%), Postives = 343/794 (43.20%), Query Frame = 1
Query: 271 ALTSLNLSSNELDGATIRSCAPKLGALSCXXXXXXXXXXXXALLGLPFLPRLSRLLVPYNRLASLDGVQVLASSLTFLDARDNRISGPTGSHAPHLAALGRLKNLLLMSPGGGQR---NPVCYCPDYREGVLSAAPWLQTFDG-----------TPTCPLRVAP-----------------------DSPAHIKPAPRRDAVSGGRTARGENSRPRSGSRGEDPEAGAESERRREDTVGAAPEEVVPT----------------PRIDAVAGRFLRRRGRGQPKRDSRWCLPDEGRGVVESS-VEYSDGDGSPRAXXXXXXXXXRLAGDDGWSESK---------EGVDRSDVGPAEHPEDSVGRYVIGVSRSIETRARVGREREQGV---LGDDEELSGHGEGSGEDVAAEEQRLLNRLRSVAQEARLEAMDSRLQDMHVSWC---AKDAVEARRATAAAXXXXXXXXXXXXXXXVAARRTDIVTAGKLQRKKDDRHNLLQVDSNDGGGIPRTQGAFGRGAARSRGVVGSKLATRPYNRESRRIWRRDTASETLPPSGIAPALDSNVTLSRNATLEASPLRRGLEDL--TIRPHCCSSGGPALAPGVPGNSATAFSMSTSSNRVARRTTTSSPARATGIARPRRLVGTSSLLGSPGRGATAEASAVVGGTSMGXXXXXXXXXXXXXAALAGVTRRRSALCFLRWARHTERARAEATVAAAEAALAEARADAGRERLAWESLEKSLEASAATREREARETAEEEGREGVRIAQAACRSAEEAAVVLRRKLAQAE 2439
ALT+LNLSSNELDG IRSCAP LG L+ LLGLPFLP L RLLVPYNRL SLDGVQ LASSLT LDARDNRI+GP G+HAPHLAALGRL++L L S G G+R NP+C C YRE V +AA L+T DG T P A D+PA +P GGR A E + P + R G P + A G GRG+ R V+S+ VE S D GWSE EG D G E S GR + ET AR R G G+ + SG E GEDVA EE LL+RLRSVAQEARLE MDSRLQD+H A+ A +ATAA R T G+ SN P Q GA + RGV G + R R + ++ L +G D V + A+ + G +P +G P +A G G+ A S + T +A G G SS L + G G + + GG S+G AAL+G RR A F RWAR T+RARA A +AAL AR +A RER AWESL+ +LE SAA REREARE+A+EEGRE +R AACRSA+EAA L +LAQAE
Sbjct: 10 ALTALNLSSNELDGEAIRSCAPHLGPLASLESLDLSCNRIDGLLGLPFLPGLRRLLVPYNRLTSLDGVQALASSLTHLDARDNRIAGPAGAHAPHLAALGRLESLALASVGRGRRVQPNPICACRGYREEVFAAARSLKTLDGESASFVLEDRETAATPAEAAAKXXXXXXXXXXXXXXXXXXXXXXDTPAASEPR-------GGRNAAAETAIPVAAVRRASGPIPXXXXXXXXXCGGGXXXXXXXXXXXXXXXXXXXXXXXRPGVAAEGGG-----GRGRCLXXXXXXXTSSPRVAVQSAGVESSSSDA-------------------GWSEGDGDSLQESHAEGFDADSFGVVE----SGGRV-----DTEETAARAVPGRRTGGGGGRGNFDGESGVREVLGEDVA-EEHGLLSRLRSVAQEARLEVMDSRLQDLHDKQAQDTARHAATVAKATAA-----------------LRRSVSNTTRGQTHEAGAAGPTRRTSRSN-----PWNQ----HGAPQQRGVAGKGVVPRTV--------RGEGSTVPLRSNGNTAVADRPVRWTHGPGDFAAIGKGGFGSRGGVTQPQVAVAG-PEVACGREGSVAARCSCCRGED------TPELTLQAAGG-------GGSSALWNAGTGKSG-SPPYTGGFSVGGAVAAAALVGATAAALSGHDGRRLASSFSRWARDTDRARAAAAAVXXDAALDGARREAERERKAWESLQVALERSAAAREREARESAQEEGREEMRSMAAACRSAKEAASSLELRLAQAE 713
BLAST of mRNA_F-serratus_M_contig127.2005.1 vs. uniprot
Match: A0A6H5LCW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCW9_9PHAE) HSP 1 Score: 221 bits (562), Expect = 1.100e-60 Identity = 162/291 (55.67%), Postives = 192/291 (65.98%), Query Frame = 1
Query: 3205 LEASARAQGDLRAALMVKDKVLEDREKLVKELRDREEDALSEARTWRDRLDAHQSEADLQLDAARDEISELQAQ------------VVELSGVEEQLRDVFKELRRYRKRGAGGSDEDDREGVHSRGKGPGGKDDAGGLTAVAAVTAAAKAVEEELREQLGAKDEALR-------YVESELLSMKSLFEGKEASLRQELGSERNKLAREAAEWKRRAEEXXXXXXXXXXXAREQASTVADLRSSLWAGECRTKELEQTLRALLNKYEHE----RRSTLKLSKIAALFNDLQ 4008
+ ASA AQGDLRAA+MVKDKVLEDREKL+KELR RE DAL+EA+ WRDRLDA Q+E+D +LDAAR+E+SEL+AQ VV LSGVE+QLR+V KELRRYRKR +G LTAV AVTAAAKAVEEELR QL AKD+ALR YVE+ELL MKS+FE KEA LRQEL ER+KLA E ++R E+ AR+ AST LRSSL G+ R+KELE+TLRALL K+ ++ KLSK+AA+F LQ
Sbjct: 1 MTASAIAQGDLRAAVMVKDKVLEDREKLIKELRLREGDALAEAQAWRDRLDAQQAESDQRLDAAREEVSELEAQASRSIFVDRGLSVVALSGVEDQLREVCKELRRYRKRHESEXXXXXXXXXXXXRQGE--------LTAVGAVTAAAKAVEEELRAQLEAKDQALRRVAPLLSYVENELLGMKSMFERKEACLRQELSEERDKLAGEVGVLRQRLEQAEAGRAAAEESARQHASTSDALRSSLRNGDRRSKELEETLRALLLKHTSHMAAAEATSKKLSKMAAIFQQLQ 283
BLAST of mRNA_F-serratus_M_contig127.2005.1 vs. uniprot
Match: A0A835ZJ80_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ80_9STRA) HSP 1 Score: 117 bits (293), Expect = 1.060e-22 Identity = 74/166 (44.58%), Postives = 94/166 (56.63%), Query Frame = 1
Query: 199 PSTLLSLSLHSNRVSSLEGLSSMTALTSLNLSSNELDGATIRSCAPKLGALSCXXXXXXXXXXXXALLGLPFLPRLSRLLVPYNRLASLDGVQVLASSLTFLDARDNRISGPTGSHAPHLAALGRLKNLLLMSPGGGQRNPVCYCPDYREGVLSAA--PWLQTFDG 690
P LLSL+LH N ++SL+GL +LT L+LSSN+L A+I +CAP LG L AL+GLP L L LL+PYN L SL+G+Q LA L LD R N ++ P HA L +L L++L L S G NPVC P Y L+AA L+ DG
Sbjct: 64 PQHLLSLNLHGNALTSLQGLERYPSLTQLDLSSNDLTTASIAACAPHLGHLHSLSTLSLAANRVGALVGLPCLAHLHTLLLPYNALTSLEGLQALAPRLRTLDLRANALAPPLAPHARVLVSLSSLRDLALRSADGACANPVCLEPAYGAAALAAAGVARLERLDG 229 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig127.2005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig127.2005.1 >prot_F-serratus_M_contig127.2005.1 ID=prot_F-serratus_M_contig127.2005.1|Name=mRNA_F-serratus_M_contig127.2005.1|organism=Fucus serratus male|type=polypeptide|length=1339bp MTSKDGVASLSVPESCGGDGEGVKPTAEDVSRVDVHETNSVQILNVINEGback to top mRNA from alignment at F-serratus_M_contig127:491183..520939+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig127.2005.1 ID=mRNA_F-serratus_M_contig127.2005.1|Name=mRNA_F-serratus_M_contig127.2005.1|organism=Fucus serratus male|type=mRNA|length=29757bp|location=Sequence derived from alignment at F-serratus_M_contig127:491183..520939+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig127:491183..520939+ >mRNA_F-serratus_M_contig127.2005.1 ID=mRNA_F-serratus_M_contig127.2005.1|Name=mRNA_F-serratus_M_contig127.2005.1|organism=Fucus serratus male|type=CDS|length=8034bp|location=Sequence derived from alignment at F-serratus_M_contig127:491183..520939+ (Fucus serratus male)back to top |