mRNA_F-serratus_M_contig127.1998.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig127.1998.1
Unique NamemRNA_F-serratus_M_contig127.1998.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig127.1998.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 268 bits (684), Expect = 5.550e-81
Identity = 155/375 (41.33%), Postives = 221/375 (58.93%), Query Frame = 1
Query:   10 GEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATATAKDGELRHFDAGQAFLKADIDEEIYIEIPEEFQEF---------PGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVN--KEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKD 1101
            G+V   + +LVA+G+ Q  G+ Y E YSP     S+R +LA   A+  E+   D   AFL  +++EEIY+E+PE  +E             V  L +++YGL QA R WN      + + GFE A ADPCV+ +  +GE E +V ++VDD+L  ++ KA +    A + +KF++KD+G A + +G  I  + + R L   Q  Y ES+IK+F     K    P   GV  L+KADEPQ+ E+K +MK  PYR  VG+LM+ A  TRPDI+ AV  ++RF ENPG  H  A +K+ +YLL TKD GI Y G   G   EAY+D+D+    D RRSVSG +LML    + W S  Q+  A  ++EAEY+AL++ VK+
Sbjct:  124 GQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQPEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKE 495          
BLAST of mRNA_F-serratus_M_contig127.1998.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 261 bits (666), Expect = 4.460e-80
Identity = 140/344 (40.70%), Postives = 209/344 (60.76%), Query Frame = 1
Query:   82 EKYSPTPSAASIRMLLATATAKDGELRHFDAGQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVNKEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLF 1110
            E Y+PT + +S+R+L A A  ++  LRHFD  QAF+++D+DE++++ +PE      G + +LNK++YGL QA R W++     +  +GF Q  AD CVFR + +G   + +VVHVDDI +  +++   D+F  +L     +K++GD  +Y GC   R+     LK  Q  Y E +   F V    ++P   G+  LS+ D+       EE+  +P+RE +G+LMW AT TRPDIA AVRAVAR+C +P   H +A + I  Y++ T D GIT+  G   GL ME + D+D+ +    RRSVSG ++M   G ISW SR Q+     T+EAEYV+LA+ +K+VLF
Sbjct:   10 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLF 345          
BLAST of mRNA_F-serratus_M_contig127.1998.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 274 bits (701), Expect = 2.040e-79
Identity = 146/369 (39.57%), Postives = 220/369 (59.62%), Query Frame = 1
Query:    4 KDGEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATATAKDGELRHFDAGQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVNKEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLF 1110
            K+G+++  + +LVA+GF Q+  V Y    SP PS+ASI+++LA A  K   L H+D  QA+  A +DEE+++++P    +    + +  +AIYGL Q+GR W     D +   GFEQ KADPCVFRK+VD    M++V++VDDIL    D+   +   A L +KF  K++G+ +++ GC I R+ +   L+  Q  Y++SM++RFDV   +++PA  G     K        E EE   +P REA+G++MW +T +RPD++ AVRAVAR    P   H  A+ KI  YL  T+D GITY  +G GL +  Y D+ + A  + RRSVSG    +    +S  S+ Q + +  ++EAEY+A  E VK+ LF
Sbjct:  794 KEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALF 1152          
BLAST of mRNA_F-serratus_M_contig127.1998.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 267 bits (683), Expect = 3.990e-79
Identity = 146/376 (38.83%), Postives = 221/376 (58.78%), Query Frame = 1
Query:    4 KDGEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATATAKDGELRHFDAGQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVNKEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTS-------EAEYVALAEAVKDVLF 1110
            K+G+++  + +LVA+GF Q+  V Y    SP PS+ASI+++LA A  K   L H+D  QA+  A +DEE+++++P    +    + +  +AIYGL Q+GR W     D +   GFEQ KADPCVFRK+VD    M++V++VDDIL    D+   +   A L +KF  K++ + +++ GC I R+ +T  L+  Q  Y++SM+KRFDV   +++PA+ GV    K D+ +  E       +P REA+G++MW +T +RPD++ AVRAVAR    P   H  A+ KI  YL  T+D GITY  +G GL +  Y D+ + A  + RRSVSG    +    +S  S+ Q + +  ++       EAEY    E VK+ LF
Sbjct:  348 KEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGE-------WPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTXXXXXXTEAEYFTAGECVKEALF 713          
BLAST of mRNA_F-serratus_M_contig127.1998.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 261 bits (668), Expect = 4.520e-79
Identity = 146/369 (39.57%), Postives = 211/369 (57.18%), Query Frame = 1
Query:    4 KDGEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATATAKDGELRHFDAGQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVNKEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLF 1110
            KDG++E  + +LVA+GF Q+  V Y    SP PS+ASI+++LA A  K  +L H+D  QAF  A +DE++++ +P    E    V +  +AIYGL Q+GR W     D +   GFEQ KADPCVFRK+ D           D IL    D    +  A+ L + F  KD+G+  ++ GC + R+ +   L+  Q  Y++S++ RFDV   + +PA+ GV    K D+    E       +P REA+G++MW +T +RPDI+ AVRAVAR    P   H KA++KI  YL  T+D GITY  +G GL +  Y D+ + A  + RRSVSG    +    IS  S+ Q + +  ++EAEY+A  E VK+ LF
Sbjct:   57 KDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLAS-LNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGE-------WPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYE-RGSGLGLAVYVDASY-ADAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALF 415          
BLAST of mRNA_F-serratus_M_contig127.1998.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 274 bits (701), Expect = 4.970e-79
Identity = 146/369 (39.57%), Postives = 220/369 (59.62%), Query Frame = 1
Query:    4 KDGEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATATAKDGELRHFDAGQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVNKEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLF 1110
            K+G+++  + +LVA+GF Q+  V Y    SP PS+ASI+++LA A  K   L H+D  QA+  A +DEE+++++P    +    + +  +AIYGL Q+GR W     D +   GFEQ KADPCVFRK+VD    M++V++VDDIL    D+   +   A L +KF  K++G+ +++ GC I R+ +   L+  Q  Y++SM++RFDV   +++PA  G     K        E EE   +P REA+G++MW +T +RPD++ AVRAVAR    P   H  A+ KI  YL  T+D GITY  +G GL +  Y D+ + A  + RRSVSG    +    +S  S+ Q + +  ++EAEY+A  E VK+ LF
Sbjct: 1173 KEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALF 1531          
BLAST of mRNA_F-serratus_M_contig127.1998.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 274 bits (701), Expect = 5.090e-79
Identity = 146/369 (39.57%), Postives = 220/369 (59.62%), Query Frame = 1
Query:    4 KDGEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATATAKDGELRHFDAGQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVNKEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLF 1110
            K+G+++  + +LVA+GF Q+  V Y    SP PS+ASI+++LA A  K   L H+D  QA+  A +DEE+++++P    +    + +  +AIYGL Q+GR W     D +   GFEQ KADPCVFRK+VD    M++V++VDDIL    D+   +   A L +KF  K++G+ +++ GC I R+ +   L+  Q  Y++SM++RFDV   +++PA  G     K        E EE   +P REA+G++MW +T +RPD++ AVRAVAR    P   H  A+ KI  YL  T+D GITY  +G GL +  Y D+ + A  + RRSVSG    +    +S  S+ Q + +  ++EAEY+A  E VK+ LF
Sbjct: 1193 KEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALF 1551          
BLAST of mRNA_F-serratus_M_contig127.1998.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 274 bits (701), Expect = 5.180e-79
Identity = 146/369 (39.57%), Postives = 220/369 (59.62%), Query Frame = 1
Query:    4 KDGEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATATAKDGELRHFDAGQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVNKEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLF 1110
            K+G+++  + +LVA+GF Q+  V Y    SP PS+ASI+++LA A  K   L H+D  QA+  A +DEE+++++P    +    + +  +AIYGL Q+GR W     D +   GFEQ KADPCVFRK+VD    M++V++VDDIL    D+   +   A L +KF  K++G+ +++ GC I R+ +   L+  Q  Y++SM++RFDV   +++PA  G     K        E EE   +P REA+G++MW +T +RPD++ AVRAVAR    P   H  A+ KI  YL  T+D GITY  +G GL +  Y D+ + A  + RRSVSG    +    +S  S+ Q + +  ++EAEY+A  E VK+ LF
Sbjct: 1336 KEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALF 1694          
BLAST of mRNA_F-serratus_M_contig127.1998.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA)

HSP 1 Score: 268 bits (686), Expect = 1.330e-78
Identity = 154/375 (41.07%), Postives = 224/375 (59.73%), Query Frame = 1
Query:   10 GEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATATAKDGELRHFDAGQAFLKADIDEEIYIEIPEEFQEF---------PGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVN--KEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKD 1101
            G+V   + +LVA+G+ Q  G+ Y E YSP     SIR +L   +A+  E+   D   AFL   ++ EIY+E+PEE +E             V  L +++YGL QA R WN     ++ ++GFE A ADPCV+ +  +GE E +V ++VDD+L  ++  A +    A + +KF++KD+G A + +G  I  + + R L   Q  Y ES+IK+F     K    P   GV  L+KADEPQ+ E+K +MK+ PYR  VG+LM+ A  TRPDI+ AV  ++RF ENPG  H  A +K+ +YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +LML +  + W S  Q+  A  ++EAEY+AL++ VK+
Sbjct:  455 GQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLEKCSAEGMEIEQCDVDTAFLYEKLEAEIYMELPEELRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKNLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQMAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGAQLEAYSDADWAGNRDDRRSVSGMLLMLCRAPVVWRSTFQKTVALSSTEAEYLALSDCVKE 826          
BLAST of mRNA_F-serratus_M_contig127.1998.1 vs. uniprot
Match: A0A2K3MAN7_TRIPR (Retrotransposon protein putative Ty1-copia subclass (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MAN7_TRIPR)

HSP 1 Score: 259 bits (661), Expect = 1.770e-78
Identity = 145/366 (39.62%), Postives = 217/366 (59.29%), Query Frame = 1
Query:    7 DGEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATATAKDGELRHFDAGQAFLKADIDEEIYIEIPEEFQEFP--GAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVNKEAK--VPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEA 1092
            DG+VE  + +LVA+G+ Q EG+ Y E +SP     SIR+LLA A   D E+   D   AFL  ++ EE+Y+  PE F        V +L ++IYGL QA R WN +F + +    F + + +PCV++K+  G + + +V++VDDIL    D  +M      L ++F +KD+G+A Y +G  I R+R  R L   Q +Y+++++KR+++ K  +  +P   GV +LS+ + P++ EE+E M   PY  AVGA+M+T T TRPD+A A+   +R+  NPG  H K V  I +YL  TKD  + YG     L ++ YTD+ F +  D  +S+SG V  L  GAISW S  Q   A  T+EAEY+A +EA
Sbjct:  150 DGKVETYKARLVAKGYRQKEGIDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGELKEEVYMTQPEGFTSLSDHNKVCKLQRSIYGLKQASRSWNIRFNNTIEKFNFVKCEEEPCVYKKI-SGSSIIFLVLYVDDILLFGNDIPSMQSTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMEKSKRGYLPVGMGV-SLSRENCPKTLEERERMSRVPYASAVGAIMYTMTCTRPDVAYALGVTSRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGNSE--LSLKGYTDASFASDKDDSKSISGYVFTLNGGAISWKSSKQATVADSTTEAEYIAASEA 511          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig127.1998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3Q908_9STRA5.550e-8141.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JLN0_9PHAE4.460e-8040.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE2.040e-7939.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC10_9PHAE3.990e-7938.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCG0_9PHAE4.520e-7939.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE4.970e-7939.57Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE5.090e-7939.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE5.180e-7939.57Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6A3YGI7_9STRA1.330e-7841.07Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3MAN7_TRIPR1.770e-7839.62Retrotransposon protein putative Ty1-copia subclas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig127contigF-serratus_M_contig127:203327..204436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score240.0
Seed ortholog evalue1.8e-60
Seed eggNOG ortholog6334.EFV57947
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size1110
Cds size1110
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929200.0503924-CDS-F-serratus_M_contig127:203326..2044361622929200.0503924-CDS-F-serratus_M_contig127:203326..204436Fucus serratus maleCDSF-serratus_M_contig127 203327..204436 -
1690962747.3852067-CDS-F-serratus_M_contig127:203326..2044361690962747.3852067-CDS-F-serratus_M_contig127:203326..204436Fucus serratus maleCDSF-serratus_M_contig127 203327..204436 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig127.1998.1prot_F-serratus_M_contig127.1998.1Fucus serratus malepolypeptideF-serratus_M_contig127 203327..204436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig127.1998.1

>prot_F-serratus_M_contig127.1998.1 ID=prot_F-serratus_M_contig127.1998.1|Name=mRNA_F-serratus_M_contig127.1998.1|organism=Fucus serratus male|type=polypeptide|length=370bp
MKDGEVENCRCQLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATATAKD
GELRHFDAGQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAG
RCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILAHAK
DKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQHLYVE
SMIKRFDVNKEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGAL
MWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITY
GGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTA
AGTSEAEYVALAEAVKDVLF
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mRNA from alignment at F-serratus_M_contig127:203327..204436-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig127.1998.1 ID=mRNA_F-serratus_M_contig127.1998.1|Name=mRNA_F-serratus_M_contig127.1998.1|organism=Fucus serratus male|type=mRNA|length=1110bp|location=Sequence derived from alignment at F-serratus_M_contig127:203327..204436- (Fucus serratus male)
ATGAAGGACGGCGAGGTCGAGAACTGTCGCTGTCAACTTGTCGCTCAAGG TTTCTGGCAGGTAGAAGGTGTGCACTACACGGAAAAGTACTCGCCCACGC CATCAGCTGCGTCAATCCGGATGCTTTTGGCGACGGCAACAGCCAAGGAT GGGGAGCTGCGCCATTTCGACGCAGGGCAGGCGTTTTTGAAGGCGGACAT CGATGAGGAGATATACATAGAGATCCCCGAGGAGTTTCAGGAGTTTCCAG GGGCAGTAGGACGGCTCAACAAGGCCATTTACGGACTCGTGCAGGCGGGG AGGTGTTGGAACAATAAGTTCTGTGACGACATGACGGCGATTGGGTTCGA GCAGGCAAAGGCGGACCCGTGCGTGTTCCGCAAGGTCGTTGACGGTGAGG CGGAGATGGTGGTGGTCGTGCACGTAGACGACATCCTGGCCCACGCCAAA GACAAAGCGACGATGGATAGATTCGCGGCCGAGCTCGGGCAGAAGTTTAA GTTGAAGGACGTGGGGGACGCCGAATACTACATGGGCTGCCACATCACCC GGAACCGCAAGACGCGTGAGTTAAAGTTCGACCAACACCTGTACGTGGAG TCGATGATAAAGAGGTTCGATGTCAATAAGGAAGCCAAGGTACCGGCTGC GTCGGGGGTGCCGACGCTCTCAAAGGCGGATGAGCCGCAAAGCCCAGAGG AAAAGGAAGAGATGAAGATGTTCCCGTACCGAGAGGCAGTGGGGGCGCTC ATGTGGACGGCGACGATGACACGGCCGGATATCGCGTGCGCCGTACGCGC TGTGGCCAGGTTCTGCGAAAACCCCGGGCCAGCGCACAAGAAGGCAGTGA TGAAGATCTTCCAGTATCTCCTTCACACGAAAGATTGGGGAATTACGTAT GGTGGACAGGGCTGTGGACTCTGCATGGAAGCGTATACGGATTCGGATTT CGGAGCCTGCCTGGACACAAGACGATCGGTTTCAGGTGCGGTGTTGATGT TGGCCAAGGGGGCGATTAGTTGGCACTCTAGAATGCAAGAGGTAACGGCA GCAGGTACCTCGGAGGCAGAGTACGTTGCCTTAGCGGAGGCAGTCAAGGA TGTACTGTTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig127:203327..204436-

>mRNA_F-serratus_M_contig127.1998.1 ID=mRNA_F-serratus_M_contig127.1998.1|Name=mRNA_F-serratus_M_contig127.1998.1|organism=Fucus serratus male|type=CDS|length=2220bp|location=Sequence derived from alignment at F-serratus_M_contig127:203327..204436- (Fucus serratus male)
ATGAAGGACGGCGAGGTCGAGAACTGTCGCTGTCAACTTGTCGCTCAAGG
TTTCTGGCAGGTAGAAGGTGTGCACTACACGGAAAAGTACTCGCCCACGC
CATCAGCTGCGTCAATCCGGATGCTTTTGGCGACGGCAACAGCCAAGGAT
GGGGAGCTGCGCCATTTCGACGCAGGGCAGGCGTTTTTGAAGGCGGACAT
CGATGAGGAGATATACATAGAGATCCCCGAGGAGTTTCAGGAGTTTCCAG
GGGCAGTAGGACGGCTCAACAAGGCCATTTACGGACTCGTGCAGGCGGGG
AGGTGTTGGAACAATAAGTTCTGTGACGACATGACGGCGATTGGGTTCGA
GCAGGCAAAGGCGGACCCGTGCGTGTTCCGCAAGGTCGTTGACGGTGAGG
CGGAGATGGTGGTGGTCGTGCACGTAGACGACATCCTGGCCCACGCCAAA
GACAAAGCGACGATGGATAGATTCGCGGCCGAGCTCGGGCAGAAGTTTAA
GTTGAAGGACGTGGGGGACGCCGAATACTACATGGGCTGCCACATCACCC
GGAACCGCAAGACGCGTGAGTTAAAGTTCGACCAACACCTGTACGTGGAG
TCGATGATAAAGAGGTTCGATGTCAATAAGGAAGCCAAGGTACCGGCTGC
GTCGGGGGTGCCGACGCTCTCAAAGGCGGATGAGCCGCAAAGCCCAGAGG
AAAAGGAAGAGATGAAGATGTTCCCGTACCGAGAGGCAGTGGGGGCGCTC
ATGTGGACGGCGACGATGACACGGCCGGATATCGCGTGCGCCGTACGCGC
TGTGGCCAGGTTCTGCGAAAACCCCGGGCCAGCGCACAAGAAGGCAGTGA
TGAAGATCTTCCAGTATCTCCTTCACACGAAAGATTGGGGAATTACGTAT
GGTGGACAGGGCTGTGGACTCTGCATGGAAGCGTATACGGATTCGGATTT
CGGAGCCTGCCTGGACACAAGACGATCGGTTTCAGGTGCGGTGTTGATGT
TGGCCAAGGGGGCGATTAGTTGGCACTCTAGAATGCAAGAGGTAACGGCA
GCAGGTACCTCGGAGGCAGAGTACGTTGCCTTAGCGGAGGCAGTCAAGGA
TGTACTGTTTATGAAGGACGGCGAGGTCGAGAACTGTCGCTGTCAACTTG
TCGCTCAAGGTTTCTGGCAGGTAGAAGGTGTGCACTACACGGAAAAGTAC
TCGCCCACGCCATCAGCTGCGTCAATCCGGATGCTTTTGGCGACGGCAAC
AGCCAAGGATGGGGAGCTGCGCCATTTCGACGCAGGGCAGGCGTTTTTGA
AGGCGGACATCGATGAGGAGATATACATAGAGATCCCCGAGGAGTTTCAG
GAGTTTCCAGGGGCAGTAGGACGGCTCAACAAGGCCATTTACGGACTCGT
GCAGGCGGGGAGGTGTTGGAACAATAAGTTCTGTGACGACATGACGGCGA
TTGGGTTCGAGCAGGCAAAGGCGGACCCGTGCGTGTTCCGCAAGGTCGTT
GACGGTGAGGCGGAGATGGTGGTGGTCGTGCACGTAGACGACATCCTGGC
CCACGCCAAAGACAAAGCGACGATGGATAGATTCGCGGCCGAGCTCGGGC
AGAAGTTTAAGTTGAAGGACGTGGGGGACGCCGAATACTACATGGGCTGC
CACATCACCCGGAACCGCAAGACGCGTGAGTTAAAGTTCGACCAACACCT
GTACGTGGAGTCGATGATAAAGAGGTTCGATGTCAATAAGGAAGCCAAGG
TACCGGCTGCGTCGGGGGTGCCGACGCTCTCAAAGGCGGATGAGCCGCAA
AGCCCAGAGGAAAAGGAAGAGATGAAGATGTTCCCGTACCGAGAGGCAGT
GGGGGCGCTCATGTGGACGGCGACGATGACACGGCCGGATATCGCGTGCG
CCGTACGCGCTGTGGCCAGGTTCTGCGAAAACCCCGGGCCAGCGCACAAG
AAGGCAGTGATGAAGATCTTCCAGTATCTCCTTCACACGAAAGATTGGGG
AATTACGTATGGTGGACAGGGCTGTGGACTCTGCATGGAAGCGTATACGG
ATTCGGATTTCGGAGCCTGCCTGGACACAAGACGATCGGTTTCAGGTGCG
GTGTTGATGTTGGCCAAGGGGGCGATTAGTTGGCACTCTAGAATGCAAGA
GGTAACGGCAGCAGGTACCTCGGAGGCAGAGTACGTTGCCTTAGCGGAGG
CAGTCAAGGATGTACTGTTT
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