mRNA_F-serratus_M_contig1269.1995.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1269.1995.1
Unique NamemRNA_F-serratus_M_contig1269.1995.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1269.1995.1 vs. uniprot
Match: A0A6H5JGY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY9_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 2.790e-35
Identity = 64/102 (62.75%), Postives = 76/102 (74.51%), Query Frame = 3
Query:    6 RERYKRMLVDQVVPKIKEVWPAGANRTFSIQQDNAPSHRIGTVPELVAACQSDGFDIKLINQPPNSPDCNVLHLGFFNAVQSLQDRTTPRTNEELVAEVTRA 311
            +E +KR +VD+V P IK  WP G  RT  IQ DN PSHRI   P++VAA  +DG+DI+LINQP NSPD N+L LGFFNAVQSLQDR TPRT +E + EV RA
Sbjct:  124 KEVFKRKVVDEVFPAIKARWPGGRGRTIYIQLDNKPSHRINADPDVVAAGIADGWDIRLINQPSNSPDTNILDLGFFNAVQSLQDRNTPRTVDEFITEVKRA 225          
BLAST of mRNA_F-serratus_M_contig1269.1995.1 vs. uniprot
Match: A0A024U5F3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U5F3_9STRA)

HSP 1 Score: 109 bits (272), Expect = 7.150e-28
Identity = 51/96 (53.12%), Postives = 68/96 (70.83%), Query Frame = 3
Query:   24 MLVDQVVPKIKEVWPAGANRTFSIQQDNAPSHRIGTVPELVAACQSDGFDIKLINQPPNSPDCNVLHLGFFNAVQSLQDRTTPRTNEELVAEVTRA 311
            ML+ +V+P IK  WP+ A R   +QQDNA  H   T P++VAAC+SDG+DI++  QPPNSPD NVL LGFF A+QS+Q+    R  +++VAE  RA
Sbjct:    1 MLLSRVIPAIKAKWPSCAGRRVVVQQDNAKPHIPPTDPDIVAACKSDGWDIEVKFQPPNSPDLNVLDLGFFRAIQSIQENNYSRCVDDIVAETERA 96          
BLAST of mRNA_F-serratus_M_contig1269.1995.1 vs. uniprot
Match: A0A024TX98_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TX98_9STRA)

HSP 1 Score: 110 bits (274), Expect = 4.430e-27
Identity = 52/99 (52.53%), Postives = 70/99 (70.71%), Query Frame = 3
Query:   15 YKRMLVDQVVPKIKEVWPAGANRTFSIQQDNAPSHRIGTVPELVAACQSDGFDIKLINQPPNSPDCNVLHLGFFNAVQSLQDRTTPRTNEELVAEVTRA 311
            YK ML+++V+P IK VWP G+ R+  IQQDNA  H      ++VAACQ DG+D++L  QP NSPD NVL LGFF A+Q+LQ+R T R  +++VA   +A
Sbjct:   13 YKAMLLERVIPTIKAVWPKGSGRSIVIQQDNARPHVPECDADIVAACQRDGWDMQLKFQPSNSPDLNVLDLGFFRAIQTLQERNTSRCIDDIVAATEQA 111          
BLAST of mRNA_F-serratus_M_contig1269.1995.1 vs. uniprot
Match: W4G786_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G786_9STRA)

HSP 1 Score: 107 bits (267), Expect = 5.260e-27
Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 3
Query:    6 RERYKRMLVDQVVPKIKEVWPAGANRTFSIQQDNAPSHRIGTVPELVAACQSDGFDIKLINQPPNSPDCNVLHLGFFNAVQSLQDRTTPRTNEELVAEVTRA 311
            RE YK MLVD+V+P I+  WP G  +   IQQDNA  H   +  ++VAAC++DG+D++++ QPPNSPD NVL LGFF A+Q+LQ      + EE+VA    A
Sbjct:    8 RETYKAMLVDKVIPAIRAKWPRGETKAVKIQQDNARPHVPPSDVDVVAACKADGWDMEVVFQPPNSPDLNVLDLGFFRAIQALQAEKHSSSLEEIVAATDAA 109          
BLAST of mRNA_F-serratus_M_contig1269.1995.1 vs. uniprot
Match: A0A6H5JRZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ6_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.800e-26
Identity = 59/103 (57.28%), Postives = 74/103 (71.84%), Query Frame = 3
Query:    3 NRERYKRMLVDQVVPKIKEVWPAGANRTFSIQQDNAPSHRIGTVPELVAACQSDGFDIKLINQPPNSPDCNVLHLGFFNAVQSLQDRTTPRTNEELVAEVTRA 311
            NR  YK  L++ V+P I+  +PA +  T   QQD+AP HR+   PE+VAA  + G  I+LINQP NSPD NVL LGFFN++QSLQDRTTP T ++LVAEV RA
Sbjct:   58 NRVTYKEKLINNVLPDIRAKFPAVS--TVFAQQDSAPGHRVMD-PEIVAAA-AQGRRIELINQPANSPDMNVLDLGFFNSIQSLQDRTTPTTIDQLVAEVERA 156          
BLAST of mRNA_F-serratus_M_contig1269.1995.1 vs. uniprot
Match: A0A484MU55_9ASTE (Uncharacterized protein n=2 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484MU55_9ASTE)

HSP 1 Score: 110 bits (275), Expect = 1.840e-25
Identity = 56/116 (48.28%), Postives = 74/116 (63.79%), Query Frame = 3
Query:    6 RERYKRMLVDQVVPKIKEVWPAGANRTFSIQQDNAPSHRIGTVPELVAACQSDGFDIKLINQPPNSPDCNVLHLGFFNAVQSLQDRTTPRTNEELVAEVTRAVKCPNICYPQQNLD 353
            +E  K MLV+QV+P I+E WP+  +R   +QQDNA  H   T PE +AA   +GF+I L NQPPNSPD N+L LGFF A+QSL+++T P+     VAE+  AVK        Q L+
Sbjct:  300 KEVTKDMLVNQVIPAIREKWPSFLDRNIILQQDNAKPHISATDPEFMAAASGNGFNIILTNQPPNSPDLNILDLGFFRAIQSLKEKTAPKN----VAELVEAVKGAYATLTPQTLN 411          
BLAST of mRNA_F-serratus_M_contig1269.1995.1 vs. uniprot
Match: A0A024T7X9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T7X9_9STRA)

HSP 1 Score: 105 bits (261), Expect = 4.330e-25
Identity = 50/97 (51.55%), Postives = 67/97 (69.07%), Query Frame = 3
Query:    6 RERYKRMLVDQVVPKIKEVWPAGANRTFSIQQDNAPSHRIGTVPELVAACQSDGFDIKLINQPPNSPDCNVLHLGFFNAVQSLQDRTTPRTNEELVA 296
            R+ Y+RMLVD+V+P I+E WP+   +   IQQDNA  H +    E+VAAC  DG+ + ++ QPPNSP+ NVL LGFF A+QSLQ     RT E++VA
Sbjct:   38 RDVYRRMLVDKVIPAIREKWPSAPTK-LKIQQDNAKPHVLPNDAEVVAACNKDGWAMSIVCQPPNSPELNVLDLGFFRAIQSLQSNHHSRTVEDIVA 133          
BLAST of mRNA_F-serratus_M_contig1269.1995.1 vs. uniprot
Match: A0A484N2F7_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484N2F7_9ASTE)

HSP 1 Score: 102 bits (255), Expect = 1.050e-24
Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 3
Query:    3 NRERYKRMLVDQVVPKIKEVWPAGANRTFSIQQDNAPSHRIGTVPELVAACQSDGFDIKLINQPPNSPDCNVLHLGFFNAVQSLQDRTTPRTNEELVAEVTRA 311
            N++ Y+  L+++V+  IKE WP G+N+   IQQDNA  H     P  +   Q+DGFDI L  QPPNSPD NVL LG+F A+QSLQ     +T ++LV  VT++
Sbjct:   53 NKDVYRSFLINKVILAIKEKWPTGSNKRVIIQQDNAKPHIACNDPAFLQVAQADGFDISLTFQPPNSPDLNVLDLGYFRAIQSLQQDHKCKTIDDLVHVVTKS 155          
BLAST of mRNA_F-serratus_M_contig1269.1995.1 vs. uniprot
Match: A0A6A4ZA70_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZA70_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.440e-24
Identity = 48/102 (47.06%), Postives = 69/102 (67.65%), Query Frame = 3
Query:    6 RERYKRMLVDQVVPKIKEVWPAGANRTFSIQQDNAPSHRIGTVPELVAACQSDGFDIKLINQPPNSPDCNVLHLGFFNAVQSLQDRTTPRTNEELVAEVTRA 311
            R  YK ML+D V+P I+  WP+G +R   IQQ NA  H   +  ++VAAC+++G+D++++ QPPNSPD NVL LGFF+A+Q+LQ      + EE+VA    A
Sbjct:  159 RPTYKAMLIDNVIPSIRSKWPSGESRAIKIQQGNARPHMPPSDVDIVAACKAEGWDMQVVFQPPNSPDLNVLDLGFFHAIQTLQVENHSSSLEEIVAATEEA 260          
BLAST of mRNA_F-serratus_M_contig1269.1995.1 vs. uniprot
Match: A0A484KMT8_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484KMT8_9ASTE)

HSP 1 Score: 107 bits (266), Expect = 1.440e-24
Identity = 54/103 (52.43%), Postives = 71/103 (68.93%), Query Frame = 3
Query:    3 NRERYKRMLVDQVVPKIKEVWPAGANRTFSIQQDNAPSHRIGTVPELVAACQSDGFDIKLINQPPNSPDCNVLHLGFFNAVQSLQDRTTPRTNEELVAEVTRA 311
            NR+  KRML+  ++P IK+ WP G++R   IQQDNA  H  G  PE+VAA Q   ++I+L  QPPNSPD NVL LGFF ++ S+QD+T PR+  +LV  VT A
Sbjct:   55 NRDVMKRMLLTNLIPAIKQKWP-GSSRDIIIQQDNAKPHVDGNDPEIVAAAQEGDWNIQLKFQPPNSPDLNVLDLGFFRSIDSVQDQTAPRSLTDLVKFVTTA 156          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1269.1995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGY9_9PHAE2.790e-3562.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A024U5F3_9STRA7.150e-2853.13Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024TX98_9STRA4.430e-2752.53Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W4G786_9STRA5.260e-2750.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6H5JRZ6_9PHAE1.800e-2657.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A484MU55_9ASTE1.840e-2548.28Uncharacterized protein n=2 Tax=Cuscuta campestris... [more]
A0A024T7X9_9STRA4.330e-2551.55Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A484N2F7_9ASTE1.050e-2447.57Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A6A4ZA70_9STRA1.440e-2447.06Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A484KMT8_9ASTE1.440e-2452.43Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1269contigF-serratus_M_contig1269:121465..121938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size475
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929199.7130249-CDS-F-serratus_M_contig1269:121464..1219381622929199.7130249-CDS-F-serratus_M_contig1269:121464..121938Fucus serratus maleCDSF-serratus_M_contig1269 121465..121938 +
1690962747.2072392-CDS-F-serratus_M_contig1269:121464..1219381690962747.2072392-CDS-F-serratus_M_contig1269:121464..121938Fucus serratus maleCDSF-serratus_M_contig1269 121465..121938 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1269.1995.1prot_F-serratus_M_contig1269.1995.1Fucus serratus malepolypeptideF-serratus_M_contig1269 121465..121938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1269.1995.1

>prot_F-serratus_M_contig1269.1995.1 ID=prot_F-serratus_M_contig1269.1995.1|Name=mRNA_F-serratus_M_contig1269.1995.1|organism=Fucus serratus male|type=polypeptide|length=158bp
STGNATSGCSWTKWSRRSRRCGLQGQTEHFPFSRTTPRPTASARFRSLWR
HASPTGSTSSSSTSRQTARTVTCFTSDSSTRYSPCRTALPRGRMRNSSRR
SPGPSNAQTSATLNKIWTTQQAVLEQIMLAKGDNTFKISHLGKDKAARSG
TPIPLELE
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mRNA from alignment at F-serratus_M_contig1269:121465..121938+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1269.1995.1 ID=mRNA_F-serratus_M_contig1269.1995.1|Name=mRNA_F-serratus_M_contig1269.1995.1|organism=Fucus serratus male|type=mRNA|length=474bp|location=Sequence derived from alignment at F-serratus_M_contig1269:121465..121938+ (Fucus serratus male)
TCAACAGGGAACGCTACAAGCGGATGCTCGTGGACCAAGTGGTCCCGAAG ATCAAGGAGGTGTGGCCTGCAGGGGCAAACCGAACATTTTCCATTCAGCA GGACAACGCCCCGTCCCACCGCATCGGCACGGTTCCGGAGCTTGTGGCGG CATGCCAGTCCGACGGGTTCGACATCAAGCTCATCAACCAGCCGCCAAAC AGCCCGGACTGTAACGTGCTTCACCTCGGATTCTTCAACGCGGTACAGTC CCTGCAGGACCGCACTACCCCGCGGACGAATGAGGAACTCGTCGCGGAGG TCACCAGGGCCGTCAAATGCCCAAACATCTGCTACCCTCAACAAAATTTG GACGACACAGCAGGCAGTCCTCGAGCAAATCATGCTGGCGAAGGGTGACA ACACTTTCAAGATTTCTCACTTGGGAAAGGATAAGGCGGCGCGCAGCGGA ACGCCGATTCCGTTGGAGCTGGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1269:121465..121938+

>mRNA_F-serratus_M_contig1269.1995.1 ID=mRNA_F-serratus_M_contig1269.1995.1|Name=mRNA_F-serratus_M_contig1269.1995.1|organism=Fucus serratus male|type=CDS|length=948bp|location=Sequence derived from alignment at F-serratus_M_contig1269:121465..121938+ (Fucus serratus male)
TCAACAGGGAACGCTACAAGCGGATGCTCGTGGACCAAGTGGTCCCGAAG
ATCAAGGAGGTGTGGCCTGCAGGGGCAAACCGAACATTTTCCATTCAGCA
GGACAACGCCCCGTCCCACCGCATCGGCACGGTTCCGGAGCTTGTGGCGG
CATGCCAGTCCGACGGGTTCGACATCAAGCTCATCAACCAGCCGCCAAAC
AGCCCGGACTGTAACGTGCTTCACCTCGGATTCTTCAACGCGGTACAGTC
CCTGCAGGACCGCACTACCCCGCGGACGAATGAGGAACTCGTCGCGGAGG
TCACCAGGGCCGTCAAATGCCCAAACATCTGCTACCCTCAACAAAATTTG
GACGACACAGCAGGCAGTCCTCGAGCAAATCATGCTGGCGAAGGGTGACA
ACACTTTCAAGATTTCTCACTTGGGAAAGGATAAGGCGGCGCGCAGCGGA
ACGCCGATTCCGTTGGAGCTGGAGTCAACAGGGAACGCTACAAGCGGATG
CTCGTGGACCAAGTGGTCCCGAAGATCAAGGAGGTGTGGCCTGCAGGGGC
AAACCGAACATTTTCCATTCAGCAGGACAACGCCCCGTCCCACCGCATCG
GCACGGTTCCGGAGCTTGTGGCGGCATGCCAGTCCGACGGGTTCGACATC
AAGCTCATCAACCAGCCGCCAAACAGCCCGGACTGTAACGTGCTTCACCT
CGGATTCTTCAACGCGGTACAGTCCCTGCAGGACCGCACTACCCCGCGGA
CGAATGAGGAACTCGTCGCGGAGGTCACCAGGGCCGTCAAATGCCCAAAC
ATCTGCTACCCTCAACAAAATTTGGACGACACAGCAGGCAGTCCTCGAGC
AAATCATGCTGGCGAAGGGTGACAACACTTTCAAGATTTCTCACTTGGGA
AAGGATAAGGCGGCGCGCAGCGGAACGCCGATTCCGTTGGAGCTGGAG
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