mRNA_F-serratus_M_contig1268.1992.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1268.1992.1
Unique NamemRNA_F-serratus_M_contig1268.1992.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1268.1992.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 5.690e-49
Identity = 86/138 (62.32%), Postives = 107/138 (77.54%), Query Frame = 1
Query:    1 VVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTAPTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKVPLGLKCGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQK 414
            ++  DIEW+I+ +GA  NPPAT QLAAGK V++  +LHGQ++ P +LP  LV LLED  LT TGVGI GDCTR+  F+GV+VAHAVDL  LA+ RKV LGL+ GLADLC HLLG+ L KD  VRLS+WN+ DLS++QK
Sbjct:  253 LLALDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQK 390          
BLAST of mRNA_F-serratus_M_contig1268.1992.1 vs. uniprot
Match: A0A6P5EXU7_ANACO (Werner Syndrome-like exonuclease n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5EXU7_ANACO)

HSP 1 Score: 85.5 bits (210), Expect = 6.780e-18
Identity = 57/139 (41.01%), Postives = 73/139 (52.52%), Query Frame = 1
Query:    1 VVGFDIEWDIALS-GAHENPPATFQLAAGKFVLVLQILHGQKTAPTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKVPLGLK-CGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQ 411
            VVG D EW    S GA  NP A  QL  G+  LV  +LH        +P +L   L D    F GVG+ GD  R+    G+ VA AVDL  LA  R     LK  GLA L + ++   + K  RVR+SRW+R+DL+ +Q
Sbjct:   53 VVGLDAEWRPNFSAGAAPNPVALVQLCVGRRCLVFSLLHADY-----VPLALANFLADTRFAFVGVGVAGDAERLADECGLPVADAVDLRDLAAERTGRRQLKQMGLAGLAAEIMEVEVRKPSRVRMSRWDRRDLTLDQ 186          
BLAST of mRNA_F-serratus_M_contig1268.1992.1 vs. uniprot
Match: A0A199VKE8_ANACO (Werner Syndrome-like exonuclease n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199VKE8_ANACO)

HSP 1 Score: 85.5 bits (210), Expect = 7.670e-17
Identity = 57/139 (41.01%), Postives = 73/139 (52.52%), Query Frame = 1
Query:    1 VVGFDIEWDIALS-GAHENPPATFQLAAGKFVLVLQILHGQKTAPTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKVPLGLK-CGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQ 411
            VVG D EW    S GA  NP A  QL  G+  LV  +LH        +P +L   L D    F GVG+ GD  R+    G+ VA AVDL  LA  R     LK  GLA L + ++   + K  RVR+SRW+R+DL+ +Q
Sbjct:  252 VVGLDAEWRPNFSAGAAPNPVALVQLCVGRRCLVFSLLHADY-----VPLALANFLADTRFAFVGVGVAGDAERLADECGLPVADAVDLRDLAAERTGRRQLKQMGLAGLAAEIMEVEVRKPSRVRMSRWDRRDLTLDQ 385          
BLAST of mRNA_F-serratus_M_contig1268.1992.1 vs. uniprot
Match: UPI001CC3C793 (Werner Syndrome-like exonuclease n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC3C793)

HSP 1 Score: 77.4 bits (189), Expect = 2.480e-14
Identity = 49/138 (35.51%), Postives = 76/138 (55.07%), Query Frame = 1
Query:    1 VVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTAPTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKVPLGLK-CGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQ 411
            VVG DIEW  + S + E+  A  QL      L+ Q+L+  +     +P SL+  L++ SLTF GVGI GD  ++ +   + V + VDL  LA  R     L+  GL +L   +LG+ + K  +V +SRW+ + L+ +Q
Sbjct:  125 VVGLDIEWRPSFSRSVEHNVAVLQLCVEGNCLIFQLLYADQ-----IPTSLINFLKNPSLTFVGVGIQGDVEKLLEDHELNVVNTVDLRSLAARRLSNPELRNSGLKELTREILGKEIGKPRKVTMSRWDAEWLTYDQ 257          
BLAST of mRNA_F-serratus_M_contig1268.1992.1 vs. uniprot
Match: B9FDW5_ORYSJ (3'-5' exonuclease domain-containing protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=B9FDW5_ORYSJ)

HSP 1 Score: 74.3 bits (181), Expect = 5.450e-14
Identity = 50/138 (36.23%), Postives = 69/138 (50.00%), Query Frame = 1
Query:    1 VVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTAPTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKVPLGLK-CGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQ 411
            VVG D+EW  A       P A  QL   +  LV QILH        +P +L   L D   TF GVG+  D  R+   +G++V  AVDL  LA        L+  GL  L   ++G  + K   VR+S W++++LSE+Q
Sbjct:   10 VVGLDVEWRPA--APVPGPVAVLQLCVDRRCLVFQILHADY-----VPDALSRFLADPRFTFVGVGVRDDAARLRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQ 140          
BLAST of mRNA_F-serratus_M_contig1268.1992.1 vs. uniprot
Match: A0A0E0IQK6_ORYNI (3'-5' exonuclease domain-containing protein n=8 Tax=Oryza TaxID=4527 RepID=A0A0E0IQK6_ORYNI)

HSP 1 Score: 75.1 bits (183), Expect = 6.630e-14
Identity = 51/138 (36.96%), Postives = 69/138 (50.00%), Query Frame = 1
Query:    1 VVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTAPTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKVPLGLK-CGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQ 411
            VVG D+EW  A       P A  QL   +  LV QILH        LP +L   L D   TF GVG+  D  R+   +G++V  AVDL  LA        L+  GL  L   ++G  + K   VR+S W++++LSE+Q
Sbjct:   55 VVGLDVEWRPA--APVPGPVAVLQLCVDRRCLVFQILHADY-----LPDALSRFLADPRYTFVGVGVRDDAARLRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQ 185          
BLAST of mRNA_F-serratus_M_contig1268.1992.1 vs. uniprot
Match: UPI001C532302 (Werner Syndrome-like exonuclease n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C532302)

HSP 1 Score: 75.5 bits (184), Expect = 1.390e-13
Identity = 47/138 (34.06%), Postives = 74/138 (53.62%), Query Frame = 1
Query:    1 VVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTAPTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIR-KVPLGLKCGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQ 411
            VVG D+EW  + S + E+  A  QL      L+ Q+L+  +     +P SL+  L + SLTF GVGI GD  ++     + V + VDL  LA  +  +P     GL +L   +LG+ + K  +V +SRW+ + L+ +Q
Sbjct:  129 VVGLDLEWRPSFSRSVEHRVAVLQLCVEGNCLIFQLLYADR-----IPTSLIEFLSNPSLTFVGVGIQGDVEKLLVDHELNVVNTVDLRSLAAKKLSIPELRDAGLKELTREVLGKEIGKPRKVTMSRWDAEWLTYDQ 261          
BLAST of mRNA_F-serratus_M_contig1268.1992.1 vs. uniprot
Match: A2XPE5_ORYSI (3'-5' exonuclease domain-containing protein n=1 Tax=Oryza sativa subsp. indica TaxID=39946 RepID=A2XPE5_ORYSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.800e-13
Identity = 50/138 (36.23%), Postives = 69/138 (50.00%), Query Frame = 1
Query:    1 VVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTAPTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKVPLGLK-CGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQ 411
            VVG D+EW  A       P A  QL   +  LV QILH        +P +L   L D   TF GVG+  D  R+   +G++V  AVDL  LA        L+  GL  L   ++G  + K   VR+S W++++LSE+Q
Sbjct:   55 VVGLDVEWRPA--APVPGPVAVLQLCVDRRCLVFQILHADY-----VPDALSRFLADPRFTFVGVGVRDDAARLRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQ 185          
BLAST of mRNA_F-serratus_M_contig1268.1992.1 vs. uniprot
Match: A0A1E5VPQ2_9POAL (3'-5' exonuclease domain-containing protein n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5VPQ2_9POAL)

HSP 1 Score: 75.9 bits (185), Expect = 2.330e-13
Identity = 45/123 (36.59%), Postives = 68/123 (55.28%), Query Frame = 1
Query:   46 HENPPATFQLAAGKFVLVLQILHGQKTAPTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKVPLGLK-CGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQ 411
            H+ P A  QL  G+  LV QIL         +P +LVG L D  +TF GVG++ D  ++ + +G++VA AVDL +LA++      L   GL  L   ++G  + K   VR+S W+ + LS+ Q
Sbjct:  249 HKAPVAVLQLCVGRRCLVFQILRADY-----VPDALVGFLADDRITFVGVGVHNDAAKLREGYGLEVARAVDLRRLAVVELGNPALHGAGLQALVWEVMGLQMEKPHHVRVSAWDARRLSKAQ 366          
BLAST of mRNA_F-serratus_M_contig1268.1992.1 vs. uniprot
Match: A0A2T7DH33_9POAL (3'-5' exonuclease domain-containing protein n=1 Tax=Panicum hallii var. hallii TaxID=1504633 RepID=A0A2T7DH33_9POAL)

HSP 1 Score: 72.4 bits (176), Expect = 1.460e-12
Identity = 50/138 (36.23%), Postives = 67/138 (48.55%), Query Frame = 1
Query:    1 VVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTAPTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLAL-IRKVPLGLKCGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQ 411
            V G D+EW  A   A   P A  Q+      LV QIL         +PG L   L D   TF GVGI  D  ++   +G++VA AVDL +LA      P  L+ GL  L   ++G  + K   VR+S W+   LS++Q
Sbjct:  109 VAGLDVEWRPA-GRAPPGPVAVLQVCVDHRCLVFQILRADY-----VPGKLSAFLADRRFTFVGVGIRDDAAKLRAGYGLRVASAVDLRRLAADALGRPDLLRAGLQALVLEVMGVQMEKPHHVRVSAWDAAALSDDQ 240          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1268.1992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE5.690e-4962.323'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6P5EXU7_ANACO6.780e-1841.01Werner Syndrome-like exonuclease n=1 Tax=Ananas co... [more]
A0A199VKE8_ANACO7.670e-1741.01Werner Syndrome-like exonuclease n=1 Tax=Ananas co... [more]
UPI001CC3C7932.480e-1435.51Werner Syndrome-like exonuclease n=1 Tax=Telopea s... [more]
B9FDW5_ORYSJ5.450e-1436.233'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A0E0IQK6_ORYNI6.630e-1436.963'-5' exonuclease domain-containing protein n=8 Ta... [more]
UPI001C5323021.390e-1334.06Werner Syndrome-like exonuclease n=1 Tax=Macadamia... [more]
A2XPE5_ORYSI1.800e-1336.233'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A1E5VPQ2_9POAL2.330e-1336.593'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A2T7DH33_9POAL1.460e-1236.233'-5' exonuclease domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1268contigF-serratus_M_contig1268:18344..18763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score94.0
Seed ortholog evalue6.1e-17
Seed eggNOG ortholog981085.XP_010111221.1
KEGG koko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009987,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:1901360
EggNOG free text desc.Werner Syndrome-like
EggNOG OGs37U7J@33090,3GIS0@35493,4JVWJ@91835,KOG4373@1,KOG4373@2759
EC3.1.11.1
COG Functional cat.L
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Exons1
Model size420
Cds size420
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929198.783858-CDS-F-serratus_M_contig1268:18343..187631622929198.783858-CDS-F-serratus_M_contig1268:18343..18763Fucus serratus maleCDSF-serratus_M_contig1268 18344..18763 +
1690962746.7610524-CDS-F-serratus_M_contig1268:18343..187631690962746.7610524-CDS-F-serratus_M_contig1268:18343..18763Fucus serratus maleCDSF-serratus_M_contig1268 18344..18763 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1268.1992.1prot_F-serratus_M_contig1268.1992.1Fucus serratus malepolypeptideF-serratus_M_contig1268 18344..18763 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1268.1992.1

>prot_F-serratus_M_contig1268.1992.1 ID=prot_F-serratus_M_contig1268.1992.1|Name=mRNA_F-serratus_M_contig1268.1992.1|organism=Fucus serratus male|type=polypeptide|length=140bp
VVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTAPTKLPGS
LVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKVPLG
LKCGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQKT*
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mRNA from alignment at F-serratus_M_contig1268:18344..18763+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1268.1992.1 ID=mRNA_F-serratus_M_contig1268.1992.1|Name=mRNA_F-serratus_M_contig1268.1992.1|organism=Fucus serratus male|type=mRNA|length=420bp|location=Sequence derived from alignment at F-serratus_M_contig1268:18344..18763+ (Fucus serratus male)
GTGGTGGGCTTTGACATCGAGTGGGATATCGCGCTTAGTGGTGCGCATGA AAATCCTCCGGCGACGTTCCAACTGGCAGCCGGTAAGTTCGTCTTGGTTC TGCAAATCTTGCACGGCCAGAAGACGGCGCCGACGAAGCTTCCAGGGTCC TTAGTCGGCCTTCTCGAGGACGCCAGCCTTACTTTCACAGGCGTCGGCAT CAATGGAGACTGCACTAGAATCGAGAAGTTCTTTGGCGTTAAAGTAGCAC ACGCGGTTGACTTGACCAAGCTAGCCTTGATTCGAAAGGTGCCGCTAGGA CTCAAGTGCGGCCTGGCCGACCTGTGCTCTCATCTGCTTGGTAGAAGCCT CTCCAAGGACGGACGCGTGAGACTTTCGAGGTGGAACCGGAAGGATCTCT CGGAAGAACAGAAGACGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1268:18344..18763+

>mRNA_F-serratus_M_contig1268.1992.1 ID=mRNA_F-serratus_M_contig1268.1992.1|Name=mRNA_F-serratus_M_contig1268.1992.1|organism=Fucus serratus male|type=CDS|length=840bp|location=Sequence derived from alignment at F-serratus_M_contig1268:18344..18763+ (Fucus serratus male)
GTGGTGGGCTTTGACATCGAGTGGGATATCGCGCTTAGTGGTGCGCATGA
AAATCCTCCGGCGACGTTCCAACTGGCAGCCGGTAAGTTCGTCTTGGTTC
TGCAAATCTTGCACGGCCAGAAGACGGCGCCGACGAAGCTTCCAGGGTCC
TTAGTCGGCCTTCTCGAGGACGCCAGCCTTACTTTCACAGGCGTCGGCAT
CAATGGAGACTGCACTAGAATCGAGAAGTTCTTTGGCGTTAAAGTAGCAC
ACGCGGTTGACTTGACCAAGCTAGCCTTGATTCGAAAGGTGCCGCTAGGA
CTCAAGTGCGGCCTGGCCGACCTGTGCTCTCATCTGCTTGGTAGAAGCCT
CTCCAAGGACGGACGCGTGAGACTTTCGAGGTGGAACCGGAAGGATCTCT
CGGAAGAACAGAAGACGTGAGTGGTGGGCTTTGACATCGAGTGGGATATC
GCGCTTAGTGGTGCGCATGAAAATCCTCCGGCGACGTTCCAACTGGCAGC
CGGTAAGTTCGTCTTGGTTCTGCAAATCTTGCACGGCCAGAAGACGGCGC
CGACGAAGCTTCCAGGGTCCTTAGTCGGCCTTCTCGAGGACGCCAGCCTT
ACTTTCACAGGCGTCGGCATCAATGGAGACTGCACTAGAATCGAGAAGTT
CTTTGGCGTTAAAGTAGCACACGCGGTTGACTTGACCAAGCTAGCCTTGA
TTCGAAAGGTGCCGCTAGGACTCAAGTGCGGCCTGGCCGACCTGTGCTCT
CATCTGCTTGGTAGAAGCCTCTCCAAGGACGGACGCGTGAGACTTTCGAG
GTGGAACCGGAAGGATCTCTCGGAAGAACAGAAGACGTGA
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