mRNA_F-serratus_M_contig1268.1992.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1268.1992.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE) HSP 1 Score: 177 bits (450), Expect = 5.690e-49 Identity = 86/138 (62.32%), Postives = 107/138 (77.54%), Query Frame = 1
Query: 1 VVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTAPTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKVPLGLKCGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQK 414
++ DIEW+I+ +GA NPPAT QLAAGK V++ +LHGQ++ P +LP LV LLED LT TGVGI GDCTR+ F+GV+VAHAVDL LA+ RKV LGL+ GLADLC HLLG+ L KD VRLS+WN+ DLS++QK
Sbjct: 253 LLALDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQK 390
BLAST of mRNA_F-serratus_M_contig1268.1992.1 vs. uniprot
Match: A0A6P5EXU7_ANACO (Werner Syndrome-like exonuclease n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5EXU7_ANACO) HSP 1 Score: 85.5 bits (210), Expect = 6.780e-18 Identity = 57/139 (41.01%), Postives = 73/139 (52.52%), Query Frame = 1
Query: 1 VVGFDIEWDIALS-GAHENPPATFQLAAGKFVLVLQILHGQKTAPTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKVPLGLK-CGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQ 411
VVG D EW S GA NP A QL G+ LV +LH +P +L L D F GVG+ GD R+ G+ VA AVDL LA R LK GLA L + ++ + K RVR+SRW+R+DL+ +Q
Sbjct: 53 VVGLDAEWRPNFSAGAAPNPVALVQLCVGRRCLVFSLLHADY-----VPLALANFLADTRFAFVGVGVAGDAERLADECGLPVADAVDLRDLAAERTGRRQLKQMGLAGLAAEIMEVEVRKPSRVRMSRWDRRDLTLDQ 186
BLAST of mRNA_F-serratus_M_contig1268.1992.1 vs. uniprot
Match: A0A199VKE8_ANACO (Werner Syndrome-like exonuclease n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199VKE8_ANACO) HSP 1 Score: 85.5 bits (210), Expect = 7.670e-17 Identity = 57/139 (41.01%), Postives = 73/139 (52.52%), Query Frame = 1
Query: 1 VVGFDIEWDIALS-GAHENPPATFQLAAGKFVLVLQILHGQKTAPTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKVPLGLK-CGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQ 411
VVG D EW S GA NP A QL G+ LV +LH +P +L L D F GVG+ GD R+ G+ VA AVDL LA R LK GLA L + ++ + K RVR+SRW+R+DL+ +Q
Sbjct: 252 VVGLDAEWRPNFSAGAAPNPVALVQLCVGRRCLVFSLLHADY-----VPLALANFLADTRFAFVGVGVAGDAERLADECGLPVADAVDLRDLAAERTGRRQLKQMGLAGLAAEIMEVEVRKPSRVRMSRWDRRDLTLDQ 385
BLAST of mRNA_F-serratus_M_contig1268.1992.1 vs. uniprot
Match: UPI001CC3C793 (Werner Syndrome-like exonuclease n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC3C793) HSP 1 Score: 77.4 bits (189), Expect = 2.480e-14 Identity = 49/138 (35.51%), Postives = 76/138 (55.07%), Query Frame = 1
Query: 1 VVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTAPTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKVPLGLK-CGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQ 411
VVG DIEW + S + E+ A QL L+ Q+L+ + +P SL+ L++ SLTF GVGI GD ++ + + V + VDL LA R L+ GL +L +LG+ + K +V +SRW+ + L+ +Q
Sbjct: 125 VVGLDIEWRPSFSRSVEHNVAVLQLCVEGNCLIFQLLYADQ-----IPTSLINFLKNPSLTFVGVGIQGDVEKLLEDHELNVVNTVDLRSLAARRLSNPELRNSGLKELTREILGKEIGKPRKVTMSRWDAEWLTYDQ 257
BLAST of mRNA_F-serratus_M_contig1268.1992.1 vs. uniprot
Match: B9FDW5_ORYSJ (3'-5' exonuclease domain-containing protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=B9FDW5_ORYSJ) HSP 1 Score: 74.3 bits (181), Expect = 5.450e-14 Identity = 50/138 (36.23%), Postives = 69/138 (50.00%), Query Frame = 1
Query: 1 VVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTAPTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKVPLGLK-CGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQ 411
VVG D+EW A P A QL + LV QILH +P +L L D TF GVG+ D R+ +G++V AVDL LA L+ GL L ++G + K VR+S W++++LSE+Q
Sbjct: 10 VVGLDVEWRPA--APVPGPVAVLQLCVDRRCLVFQILHADY-----VPDALSRFLADPRFTFVGVGVRDDAARLRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQ 140
BLAST of mRNA_F-serratus_M_contig1268.1992.1 vs. uniprot
Match: A0A0E0IQK6_ORYNI (3'-5' exonuclease domain-containing protein n=8 Tax=Oryza TaxID=4527 RepID=A0A0E0IQK6_ORYNI) HSP 1 Score: 75.1 bits (183), Expect = 6.630e-14 Identity = 51/138 (36.96%), Postives = 69/138 (50.00%), Query Frame = 1
Query: 1 VVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTAPTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKVPLGLK-CGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQ 411
VVG D+EW A P A QL + LV QILH LP +L L D TF GVG+ D R+ +G++V AVDL LA L+ GL L ++G + K VR+S W++++LSE+Q
Sbjct: 55 VVGLDVEWRPA--APVPGPVAVLQLCVDRRCLVFQILHADY-----LPDALSRFLADPRYTFVGVGVRDDAARLRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQ 185
BLAST of mRNA_F-serratus_M_contig1268.1992.1 vs. uniprot
Match: UPI001C532302 (Werner Syndrome-like exonuclease n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C532302) HSP 1 Score: 75.5 bits (184), Expect = 1.390e-13 Identity = 47/138 (34.06%), Postives = 74/138 (53.62%), Query Frame = 1
Query: 1 VVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTAPTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIR-KVPLGLKCGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQ 411
VVG D+EW + S + E+ A QL L+ Q+L+ + +P SL+ L + SLTF GVGI GD ++ + V + VDL LA + +P GL +L +LG+ + K +V +SRW+ + L+ +Q
Sbjct: 129 VVGLDLEWRPSFSRSVEHRVAVLQLCVEGNCLIFQLLYADR-----IPTSLIEFLSNPSLTFVGVGIQGDVEKLLVDHELNVVNTVDLRSLAAKKLSIPELRDAGLKELTREVLGKEIGKPRKVTMSRWDAEWLTYDQ 261
BLAST of mRNA_F-serratus_M_contig1268.1992.1 vs. uniprot
Match: A2XPE5_ORYSI (3'-5' exonuclease domain-containing protein n=1 Tax=Oryza sativa subsp. indica TaxID=39946 RepID=A2XPE5_ORYSI) HSP 1 Score: 74.3 bits (181), Expect = 1.800e-13 Identity = 50/138 (36.23%), Postives = 69/138 (50.00%), Query Frame = 1
Query: 1 VVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTAPTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKVPLGLK-CGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQ 411
VVG D+EW A P A QL + LV QILH +P +L L D TF GVG+ D R+ +G++V AVDL LA L+ GL L ++G + K VR+S W++++LSE+Q
Sbjct: 55 VVGLDVEWRPA--APVPGPVAVLQLCVDRRCLVFQILHADY-----VPDALSRFLADPRFTFVGVGVRDDAARLRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQ 185
BLAST of mRNA_F-serratus_M_contig1268.1992.1 vs. uniprot
Match: A0A1E5VPQ2_9POAL (3'-5' exonuclease domain-containing protein n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5VPQ2_9POAL) HSP 1 Score: 75.9 bits (185), Expect = 2.330e-13 Identity = 45/123 (36.59%), Postives = 68/123 (55.28%), Query Frame = 1
Query: 46 HENPPATFQLAAGKFVLVLQILHGQKTAPTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKVPLGLK-CGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQ 411
H+ P A QL G+ LV QIL +P +LVG L D +TF GVG++ D ++ + +G++VA AVDL +LA++ L GL L ++G + K VR+S W+ + LS+ Q
Sbjct: 249 HKAPVAVLQLCVGRRCLVFQILRADY-----VPDALVGFLADDRITFVGVGVHNDAAKLREGYGLEVARAVDLRRLAVVELGNPALHGAGLQALVWEVMGLQMEKPHHVRVSAWDARRLSKAQ 366
BLAST of mRNA_F-serratus_M_contig1268.1992.1 vs. uniprot
Match: A0A2T7DH33_9POAL (3'-5' exonuclease domain-containing protein n=1 Tax=Panicum hallii var. hallii TaxID=1504633 RepID=A0A2T7DH33_9POAL) HSP 1 Score: 72.4 bits (176), Expect = 1.460e-12 Identity = 50/138 (36.23%), Postives = 67/138 (48.55%), Query Frame = 1
Query: 1 VVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTAPTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLAL-IRKVPLGLKCGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQ 411
V G D+EW A A P A Q+ LV QIL +PG L L D TF GVGI D ++ +G++VA AVDL +LA P L+ GL L ++G + K VR+S W+ LS++Q
Sbjct: 109 VAGLDVEWRPA-GRAPPGPVAVLQVCVDHRCLVFQILRADY-----VPGKLSAFLADRRFTFVGVGIRDDAAKLRAGYGLRVASAVDLRRLAADALGRPDLLRAGLQALVLEVMGVQMEKPHHVRVSAWDAAALSDDQ 240 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1268.1992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1268.1992.1 >prot_F-serratus_M_contig1268.1992.1 ID=prot_F-serratus_M_contig1268.1992.1|Name=mRNA_F-serratus_M_contig1268.1992.1|organism=Fucus serratus male|type=polypeptide|length=140bp VVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTAPTKLPGSback to top mRNA from alignment at F-serratus_M_contig1268:18344..18763+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1268.1992.1 ID=mRNA_F-serratus_M_contig1268.1992.1|Name=mRNA_F-serratus_M_contig1268.1992.1|organism=Fucus serratus male|type=mRNA|length=420bp|location=Sequence derived from alignment at F-serratus_M_contig1268:18344..18763+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1268:18344..18763+ >mRNA_F-serratus_M_contig1268.1992.1 ID=mRNA_F-serratus_M_contig1268.1992.1|Name=mRNA_F-serratus_M_contig1268.1992.1|organism=Fucus serratus male|type=CDS|length=840bp|location=Sequence derived from alignment at F-serratus_M_contig1268:18344..18763+ (Fucus serratus male)back to top |