mRNA_F-serratus_M_contig1267.1990.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1267.1990.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE) HSP 1 Score: 198 bits (503), Expect = 2.320e-60 Identity = 97/168 (57.74%), Postives = 123/168 (73.21%), Query Frame = 1
Query: 1 MLTRNLWSEVGLVNGIRGYVVDIVWAHGEKAPALPDSVVLHLEGYTGPAWSSEPRYQGCVPIAPFETFWSTTGDDRGLETRHQVPLALCWAITMHKSQGQTMDKTVIDLGKSESTAGLTFVCLSRAKRLVDLLIEPMTFERLSKIGDTPKFQLRLREEGRLRALAGET 504
ML++NL+ +VGLVNGIRG VV++V A P LP VV+ EGY+G WSS+ RY+ CVPI+P +T W D G + R Q+PL LCWAITMHKSQGQT+ K VIDLG E+ GLTFVCLSRAKRLVDL++EPM+F+R+ +G++P + RL+EE RL LA T
Sbjct: 110 MLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ----DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 273
BLAST of mRNA_F-serratus_M_contig1267.1990.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE) HSP 1 Score: 198 bits (503), Expect = 2.100e-58 Identity = 97/168 (57.74%), Postives = 123/168 (73.21%), Query Frame = 1
Query: 1 MLTRNLWSEVGLVNGIRGYVVDIVWAHGEKAPALPDSVVLHLEGYTGPAWSSEPRYQGCVPIAPFETFWSTTGDDRGLETRHQVPLALCWAITMHKSQGQTMDKTVIDLGKSESTAGLTFVCLSRAKRLVDLLIEPMTFERLSKIGDTPKFQLRLREEGRLRALAGET 504
ML++NL+ +VGLVNGIRG VV++V A P LP VV+ EGY+G WSS+ RY+ CVPI+P +T W D G + R Q+PL LCWAITMHKSQGQT+ K VIDLG E+ GLTFVCLSRAKRLVDL++EPM+F+R+ +G++P + RL+EE RL LA T
Sbjct: 284 MLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ----DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 447
BLAST of mRNA_F-serratus_M_contig1267.1990.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE) HSP 1 Score: 198 bits (503), Expect = 3.190e-58 Identity = 97/168 (57.74%), Postives = 123/168 (73.21%), Query Frame = 1
Query: 1 MLTRNLWSEVGLVNGIRGYVVDIVWAHGEKAPALPDSVVLHLEGYTGPAWSSEPRYQGCVPIAPFETFWSTTGDDRGLETRHQVPLALCWAITMHKSQGQTMDKTVIDLGKSESTAGLTFVCLSRAKRLVDLLIEPMTFERLSKIGDTPKFQLRLREEGRLRALAGET 504
ML++NL+ +VGLVNGIRG VV++V A P LP VV+ EGY+G WSS+ RY+ CVPI+P +T W D G + R Q+PL LCWAITMHKSQGQT+ K VIDLG E+ GLTFVCLSRAKRLVDL++EPM+F+R+ +G++P + RL+EE RL LA T
Sbjct: 1 MLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ----DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 164
BLAST of mRNA_F-serratus_M_contig1267.1990.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE) HSP 1 Score: 193 bits (490), Expect = 1.020e-53 Identity = 92/158 (58.23%), Postives = 118/158 (74.68%), Query Frame = 1
Query: 1 MLTRNLWSEVGLVNGIRGYVVDIVWAHGEKAPALPDSVVLHLEGYTGPAWSSEPRYQGCVPIAPFETFWSTTGDDRGLETRHQVPLALCWAITMHKSQGQTMDKTVIDLGKSESTAGLTFVCLSRAKRLVDLLIEPMTFERLSKIGDTPKFQLRLREE 474
ML++NL+ +VGLVNGIRG VV++V A P LP VV+ EGY+G WSS+ RY+ CVPI+P +T W D G + R Q+PL LCWAITMHKSQGQT+ K VIDLG E+ GLTFVCLSRAKRLVDL++EPM+F+R+ +G++P + RL+EE
Sbjct: 1415 MLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ----DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEE 1568
BLAST of mRNA_F-serratus_M_contig1267.1990.1 vs. uniprot
Match: A0A6S7KC61_PARCT (ATP-dependent DNA helicase PIF1 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KC61_PARCT) HSP 1 Score: 158 bits (399), Expect = 7.310e-46 Identity = 82/168 (48.81%), Postives = 106/168 (63.10%), Query Frame = 1
Query: 1 MLTRNLWSEVGLVNGIRGYVVDIVWAHGEKAPALPDSVVLHLEGYTGPAWSSEPRYQGCVPIAPFETFWSTTGDDRGLETRHQVPLALCWAITMHKSQGQTMDKTVIDLGKSESTAGLTFVCLSRAKRLVDLLIEPMTFERLSKIGDTPKFQLRLREEGRLRALAGET 504
MLT NLWS VGL NG G +VDIV+ + + P LP +V+++ E Y GP +S E CVPI P T G G R Q+PL L WA+T+HKSQG T+ K ID+GKSE TAG+++V +SR K L +IEPMT+ERL+ + + Q RL+EE RL LA T
Sbjct: 22 MLTMNLWSSVGLCNGATGTIVDIVFQNNQNPPDLPIAVIVNFENYRGPHFSEERPM--CVPICPITVSSQTEG---GFHERQQLPLRLAWALTIHKSQGLTLSKAWIDVGKSERTAGVSYVAISRVKTLASCVIEPMTYERLTSLKSSANLQYRLQEEDRLNQLAQAT 184
BLAST of mRNA_F-serratus_M_contig1267.1990.1 vs. uniprot
Match: A0A6S7LS63_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7LS63_PARCT) HSP 1 Score: 152 bits (385), Expect = 4.730e-43 Identity = 80/169 (47.34%), Postives = 106/169 (62.72%), Query Frame = 1
Query: 1 MLTRNLWSEVGLVNGIRGYVVDIVWAHGEKAPALPDSVVLHLEGYTGPAWS-SEPRYQGCVPIAPFETFWSTTGDDRGLETRHQVPLALCWAITMHKSQGQTMDKTVIDLGKSESTAGLTFVCLSRAKRLVDLLIEPMTFERLSKIGDTPKFQLRLREEGRLRALAGET 504
MLT NLWS VGL NG G VVDI++ + + P LP +V++ E Y GP ++ S P C+PI P T+ + G R Q+PL L WA+T+HKSQG T+ K ID+GKSE TAG+++V +SR K L +IEPMT+ERL+ + + Q RL EE RL LA T
Sbjct: 80 MLTMNLWSSVGLCNGATGTVVDIIYQNNHQPPDLPIAVIVEFENYRGPVFNESRPL---CIPIYPITV---TSQTEIGFHERQQLPLRLAWALTIHKSQGLTLPKAWIDIGKSERTAGVSYVAISRVKSLASCVIEPMTYERLTSLKSSANLQYRLEEENRLDQLAQTT 242
BLAST of mRNA_F-serratus_M_contig1267.1990.1 vs. uniprot
Match: UPI001F03AE50 (ATP-dependent DNA helicase PIF1-like n=2 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03AE50) HSP 1 Score: 152 bits (383), Expect = 9.450e-43 Identity = 76/165 (46.06%), Postives = 107/165 (64.85%), Query Frame = 1
Query: 1 MLTRNLWSEVGLVNGIRGYVVDIVWAHGEKAPALPDSVVLHLEGYTGPAWSSEPRYQGCVPIAPFETFWSTTGDDRGLETRHQVPLALCWAITMHKSQGQTMDKTVIDLGKSESTAGLTFVCLSRAKRLVDLLIEPMTFERLSKIGDTPKFQLRLREEGRLRALA 495
MLT NLWS VGL NG G VVDI++ + P LP +V++ E Y GPA++ + + CVPI P ++ + G R Q+PL L WA+T+HKSQG T+ K ID+GKSE TAG+++V +SR K ++ +IEPMT+ERL+ + + Q R+ EE RL +LA
Sbjct: 84 MLTMNLWSTVGLCNGATGKVVDIIFHDNHQPPDLPIAVIIEFENYRGPAFNVDKPF--CVPICPITV---SSQLETGYHERQQLPLRLAWALTIHKSQGLTLPKAWIDIGKSERTAGVSYVAISRVKSILSCVIEPMTYERLTSLKSSANLQYRIEEENRLDSLA 243
BLAST of mRNA_F-serratus_M_contig1267.1990.1 vs. uniprot
Match: A0A7D9HJE5_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HJE5_PARCT) HSP 1 Score: 152 bits (383), Expect = 1.890e-42 Identity = 78/168 (46.43%), Postives = 103/168 (61.31%), Query Frame = 1
Query: 1 MLTRNLWSEVGLVNGIRGYVVDIVWAHGEKAPALPDSVVLHLEGYTGPAWSSEPRYQGCVPIAPFETFWSTTGDDRGLETRHQVPLALCWAITMHKSQGQTMDKTVIDLGKSESTAGLTFVCLSRAKRLVDLLIEPMTFERLSKIGDTPKFQLRLREEGRLRALAGET 504
MLT NLWS VGL NG G VVDI++ + + P LP +V++ E Y GP ++ C+PI P T + G R Q+PL L WA+T+HKSQG T+ K ID+GKSE TAG+++V +SR K L +IEPMT+ERL+ + + Q RL EE RL LA T
Sbjct: 106 MLTMNLWSSVGLCNGATGTVVDIIYQNNHQPPDLPIAVIVEFENYRGPVFNENQPL--CIPIIPITVASQT---EIGFHERQQLPLRLAWALTIHKSQGLTLPKAWIDIGKSERTAGVSYVAISRVKSLASCVIEPMTYERLTSLKSSANLQYRLEEENRLDQLAQAT 268
BLAST of mRNA_F-serratus_M_contig1267.1990.1 vs. uniprot
Match: UPI00106C2519 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C2519) HSP 1 Score: 153 bits (386), Expect = 4.350e-42 Identity = 80/168 (47.62%), Postives = 105/168 (62.50%), Query Frame = 1
Query: 1 MLTRNLWSEVGLVNGIRGYVVDIVWAHGEKAPALPDSVVLHLEGYTGPAWSSEPRYQGCVPIAPFETFWSTTGDDRGLETRHQVPLALCWAITMHKSQGQTMDKTVIDLGKSESTAGLTFVCLSRAKRLVDLLIEPMTFERLSKIGDTPKFQLRLREEGRLRALAGET 504
MLT NLWS VGL NG G VVDIV+ + + P LP +V++ E Y GPA++ CVPI P ++ + G R Q+PL L WA+T+HKSQG T+ K ID+GKSE TAG+++V +SR + L +IEPMTFERL+ + + Q RL EE RL LA T
Sbjct: 187 MLTMNLWSSVGLCNGATGTVVDIVYQNNHQPPDLPIAVIVDFENYRGPAFNV--NKPSCVPICPITV---SSQSESGFHERQQLPLRLAWALTIHKSQGLTLPKAWIDIGKSEKTAGVSYVAISRVRSLSSCVIEPMTFERLTSLKSSASLQYRLEEEYRLDHLAQTT 349
BLAST of mRNA_F-serratus_M_contig1267.1990.1 vs. uniprot
Match: UPI00106C62E8 (ATP-dependent DNA helicase PIF6-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C62E8) HSP 1 Score: 150 bits (379), Expect = 6.780e-42 Identity = 78/168 (46.43%), Postives = 104/168 (61.90%), Query Frame = 1
Query: 1 MLTRNLWSEVGLVNGIRGYVVDIVWAHGEKAPALPDSVVLHLEGYTGPAWSSEPRYQGCVPIAPFETFWSTTGDDRGLETRHQVPLALCWAITMHKSQGQTMDKTVIDLGKSESTAGLTFVCLSRAKRLVDLLIEPMTFERLSKIGDTPKFQLRLREEGRLRALAGET 504
MLT NLWS VGL NG G VVDIV+ + + P LP V++ E Y GPA++ + CVPI P ++ + G Q+PL L WA+T+HKSQG T+ K ID+GK+E TAG+++V +SR K L +IEPMT+ERL+ + + Q RL EE RL LA T
Sbjct: 106 MLTMNLWSSVGLCNGATGIVVDIVYQNNHQPPDLPIVVIIEFENYRGPAFNVDKP--SCVPICPITV---SSQSETGFHELQQLPLRLAWALTIHKSQGLTLPKAWIDIGKTERTAGVSYVAISRVKLLSSCVIEPMTYERLTSLKSSANLQYRLEEENRLDRLAQTT 268 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1267.1990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1267.1990.1 >prot_F-serratus_M_contig1267.1990.1 ID=prot_F-serratus_M_contig1267.1990.1|Name=mRNA_F-serratus_M_contig1267.1990.1|organism=Fucus serratus male|type=polypeptide|length=177bp MLTRNLWSEVGLVNGIRGYVVDIVWAHGEKAPALPDSVVLHLEGYTGPAWback to top mRNA from alignment at F-serratus_M_contig1267:47606..48136+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1267.1990.1 ID=mRNA_F-serratus_M_contig1267.1990.1|Name=mRNA_F-serratus_M_contig1267.1990.1|organism=Fucus serratus male|type=mRNA|length=531bp|location=Sequence derived from alignment at F-serratus_M_contig1267:47606..48136+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1267:47606..48136+ >mRNA_F-serratus_M_contig1267.1990.1 ID=mRNA_F-serratus_M_contig1267.1990.1|Name=mRNA_F-serratus_M_contig1267.1990.1|organism=Fucus serratus male|type=CDS|length=1062bp|location=Sequence derived from alignment at F-serratus_M_contig1267:47606..48136+ (Fucus serratus male)back to top |