mRNA_F-serratus_M_contig1261.1977.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1261.1977.1
Unique NamemRNA_F-serratus_M_contig1261.1977.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1261.1977.1 vs. uniprot
Match: D8LEE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEE4_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 5.740e-24
Identity = 42/59 (71.19%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:   10 HWPSGIDVAYSVATLCEKDTHCPGSFCDLQQQPKTCAAKIREHFVQSGWHFLDPRWQIL 186
            HWPS +DV YS A LCEKD+HCPGSFC  QQ+P+ CA K+ EHF QSG HFLDPRW+IL
Sbjct:  113 HWPSAVDVDYSAAALCEKDSHCPGSFCSSQQEPRICAPKLEEHFQQSGEHFLDPRWEIL 171
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1261.1977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEE4_ECTSI5.740e-2471.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1261contigF-serratus_M_contig1261:129786..131138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_001990.1
Exons2
Model size893
Cds size207
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1261.1977.1prot_F-serratus_M_contig1261.1977.1Fucus serratus malepolypeptideF-serratus_M_contig1261 129786..130452 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929196.9434588-CDS-F-serratus_M_contig1261:129785..1298481622929196.9434588-CDS-F-serratus_M_contig1261:129785..129848Fucus serratus maleCDSF-serratus_M_contig1261 129786..129848 +
1690962745.7562068-CDS-F-serratus_M_contig1261:129785..1298481690962745.7562068-CDS-F-serratus_M_contig1261:129785..129848Fucus serratus maleCDSF-serratus_M_contig1261 129786..129848 +
1622929196.9609785-CDS-F-serratus_M_contig1261:130308..1304521622929196.9609785-CDS-F-serratus_M_contig1261:130308..130452Fucus serratus maleCDSF-serratus_M_contig1261 130309..130452 +
1690962745.7654684-CDS-F-serratus_M_contig1261:130308..1304521690962745.7654684-CDS-F-serratus_M_contig1261:130308..130452Fucus serratus maleCDSF-serratus_M_contig1261 130309..130452 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929196.976132-UTR-F-serratus_M_contig1261:130452..1311381622929196.976132-UTR-F-serratus_M_contig1261:130452..131138Fucus serratus maleUTRF-serratus_M_contig1261 130453..131138 +
1690962745.7768054-UTR-F-serratus_M_contig1261:130452..1311381690962745.7768054-UTR-F-serratus_M_contig1261:130452..131138Fucus serratus maleUTRF-serratus_M_contig1261 130453..131138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1261.1977.1

>prot_F-serratus_M_contig1261.1977.1 ID=prot_F-serratus_M_contig1261.1977.1|Name=mRNA_F-serratus_M_contig1261.1977.1|organism=Fucus serratus male|type=polypeptide|length=69bp
PVSHWPSGIDVAYSVATLCEKDTHCPGSFCDLQQQPKTCAAKIREHFVQS
GWHFLDPRWQILQRLGER*
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mRNA from alignment at F-serratus_M_contig1261:129786..131138+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1261.1977.1 ID=mRNA_F-serratus_M_contig1261.1977.1|Name=mRNA_F-serratus_M_contig1261.1977.1|organism=Fucus serratus male|type=mRNA|length=1353bp|location=Sequence derived from alignment at F-serratus_M_contig1261:129786..131138+ (Fucus serratus male)
CCCGTGTCCCACTGGCCCAGCGGTATAGATGTGGCGTACTCAGTGGCTAC
ACTGTGTGAGAAGGTAGGGACAGACGGAGGCTTGAAAATTTTGCACTGCA
GTTTTAGAGCTCGAGGATGATACCCTGTTGCTACGTTCTTCGTTGTATGC
TTAATACAAAATAGACCATTTTTATCTAAAAGTCGCGAGCCCGATTGTTC
GCTCGAAAGTACGCGCGCCACCGCGGGCAAAAAAGAGATGGACGTGACCC
GTCCCCAAAGAGACCCATCCATGAACCGTCTTCAGGTGAAATCGCTCAGC
GATAGCACCCTCCAAAGTGATCCCGAGCGGAATTTTCCACTAACTTGACA
TTCGACCGCTTGTGCTTGAATGAAGCACCTCACCTCCGGCAGCAATCGAG
GGGAAGCGAAACCCCAGACGGCTTGCCCTTGATTATTGCGTGACCTGTTT
CTGACCAAGATAAAACATTTTTGATTTTTCCACCCCCTTTCAACGGTTGC
CATAATACTCTTCATTATTTCAGGACACCCACTGCCCAGGTTCCTTTTGC
GACTTGCAGCAGCAACCAAAGACATGTGCGGCGAAGATCCGGGAGCACTT
CGTTCAGAGTGGTTGGCATTTCCTGGATCCTCGCTGGCAAATTCTTCAAC
GTTTGGGAGAGAGATAGGGAATGTGGGATGAAGAAATAACTGGGCGATGA
AGGAGAGGAGATTCTGATTTTTAAAAAAGCGTTATATTTTTGATTGGTCA
ACGCTTTCTCGTGAATCACAGGAGTCGGTTGGTTTGACCGACCGCACGCG
CGGACGCTTTGCGGAGCGAAACCAACGTGATTTGCGAAGCGAAACAAACG
TTCTACCAGTTTTTGTCTTGAGGTTTGTACGTCAGTGCGGAAAGAGCATG
AGTTCAATTCCTCACAAGATAGTGGTGTATTTTCTCCCGAGTTATCTCCA
TGATATCCATTCCCGCTCGCAAGAGCCCCAGTTTTCTTTTAGTAACCGAC
GGTATCACAGAAGATTGCAATAAATTATATTAGTCAACCGATAGTAACGC
GCACGCATGAGGCCCCGAAAAACAAAAATATCCCGTGCCAATACCGTACA
CGGCATCGCCCACAAATTTTGTCAGCATTTGCAACAGTTACTACCGTGTC
TTTCTCGTAACCCTTCTGTCGATCCAGCGAAAACTCGGCCAGCTACACCC
AAGCCCAACGAGTATTAGCCATCTAGTCATATGATCTCCCCGAGCTCCAA
AACTTACGTGGGAGATAGGAATCCAATCTCCTGCTTCGAAAGCCGGCCGA
CTACAACAATGGCAAATGTTGCAACACCTTATACTTGATATATATAATAT
CCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1261:129786..131138+

>mRNA_F-serratus_M_contig1261.1977.1 ID=mRNA_F-serratus_M_contig1261.1977.1|Name=mRNA_F-serratus_M_contig1261.1977.1|organism=Fucus serratus male|type=CDS|length=414bp|location=Sequence derived from alignment at F-serratus_M_contig1261:129786..131138+ (Fucus serratus male)
CCCGTGTCCCACTGGCCCAGCGGTATAGATGTGGCGTACTCAGTGGCTAC
ACTGTGTGAGAAGCCCGTGTCCCACTGGCCCAGCGGTATAGATGTGGCGT
ACTCAGTGGCTACACTGTGTGAGAAGGACACCCACTGCCCAGGTTCCTTT
TGCGACTTGCAGCAGCAACCAAAGACATGTGCGGCGAAGATCCGGGAGCA
CTTCGTTCAGAGTGGTTGGCATTTCCTGGATCCTCGCTGGCAAATTCTTC
AACGTTTGGGAGAGAGATAGGACACCCACTGCCCAGGTTCCTTTTGCGAC
TTGCAGCAGCAACCAAAGACATGTGCGGCGAAGATCCGGGAGCACTTCGT
TCAGAGTGGTTGGCATTTCCTGGATCCTCGCTGGCAAATTCTTCAACGTT
TGGGAGAGAGATAG
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