mRNA_F-serratus_M_contig1261.1976.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1261.1976.1
Unique NamemRNA_F-serratus_M_contig1261.1976.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1261.1976.1 vs. uniprot
Match: A0A7S2CVA0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CVA0_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.530e-39
Identity = 78/204 (38.24%), Postives = 107/204 (52.45%), Query Frame = 1 
Query:   91 CKPALQKACESAYLSCRLSVPVDDQQNICGCAALYYGTCLPAAGCTGNEEMTSCIGELVEWNCPDMSVCGNDCTLEDGDPRLPAGTV-VLPLNNFGANYLQLSVCSNGMDTAKLLHFGQVSMSSCDSQDFRVCHLWVAPRTFTAVAFPPQVTQLQVEQCVRLE--------------GAETDIWSDNW--ECLSEPLPAKYYGS 651
            C    ++ C   Y  CR +   +     C CA   YG CL  AGC   + MT C+  L+  NC DMSVCG++C +  G+  +   T  VLP+NNFG NYLQ SVC  G ++ +L  F QVSM  CD   F VC  W+ P TFTA+A     + +++E+CV ++               A+     DN+  ECL EP P +YYG+
Sbjct:   24 CNMRAEQKCIQEYEECRQTGLAESSVTECECATELYGLCLRKAGCAA-DRMTECVSRLMGENCEDMSVCGSNC-VGQGNHLIDMDTARVLPVNNFGENYLQFSVCHQGPNSHRLSKFSQVSMERCDESSFHVCPYWIPPNTFTALAISANASYIRMERCVYVDYNEDAPTPSPTESGTADDSSGDDNFVAECLKEPKPVEYYGT 225
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BLAST of mRNA_F-serratus_M_contig1261.1976.1 vs. uniprot
Match: A0A7S2SLL9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SLL9_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.400e-39
Identity = 77/194 (39.69%), Postives = 102/194 (52.58%), Query Frame = 1 
Query:   97 PALQKACESAYLSCRL-SVPVDDQQNICGCAALYYGTCLPAAGCTGNEEMTSCIGELVEWNCPDMSVCGNDCTLEDGDPRLPAGTVVLPLNNFGANYLQLSVCSNGMDTAKLLHFGQVSMSSCDSQDFRVCHLWVAPRTFTAVAFPPQVTQLQVEQCVRLEGAETDIWSDNWE--------CLSEPLPAKYYGS 651
            P  +  CE  Y+ C L   P +D    C CAA +YG CL  AGC   E M  CI E +  +C DMSVCG++C        +     +LP+NNFGANY+Q SVC  G+D   L  F  V M  CD   F+VC  W+ PRTFT +A P   T +++E+ V L+    D W+ +W          L  P P +YYG+
Sbjct:    1 PLKEYQCEQDYMLCILYRGPANDPPTACMCAAEFYGACLRDAGCAP-ERMMDCIDEHMLQDCQDMSVCGSNCIGNGNSYDIRNQARILPVNNFGANYIQFSVCDLGIDLDILSRFETVRMRRCDDATFKVCPFWIPPRTFTGLAIPKNSTYIKMERTVYLQKRLADEWNVSWTRTDDFVAAVLRNPPPEEYYGT 193
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1261.1976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S2CVA0_9STRA1.530e-3938.24Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2SLL9_9STRA2.400e-3939.69Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1261contigF-serratus_M_contig1261:125113..129777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size696
Cds size696
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1261.1976.1prot_F-serratus_M_contig1261.1976.1Fucus serratus malepolypeptideF-serratus_M_contig1261 125113..129777 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929196.846123-CDS-F-serratus_M_contig1261:125112..1252011622929196.846123-CDS-F-serratus_M_contig1261:125112..125201Fucus serratus maleCDSF-serratus_M_contig1261 125113..125201 +
1690962745.7055445-CDS-F-serratus_M_contig1261:125112..1252011690962745.7055445-CDS-F-serratus_M_contig1261:125112..125201Fucus serratus maleCDSF-serratus_M_contig1261 125113..125201 +
1622929196.8613667-CDS-F-serratus_M_contig1261:128056..1281451622929196.8613667-CDS-F-serratus_M_contig1261:128056..128145Fucus serratus maleCDSF-serratus_M_contig1261 128057..128145 +
1690962745.7215092-CDS-F-serratus_M_contig1261:128056..1281451690962745.7215092-CDS-F-serratus_M_contig1261:128056..128145Fucus serratus maleCDSF-serratus_M_contig1261 128057..128145 +
1622929196.872834-CDS-F-serratus_M_contig1261:128652..1288041622929196.872834-CDS-F-serratus_M_contig1261:128652..128804Fucus serratus maleCDSF-serratus_M_contig1261 128653..128804 +
1690962745.729748-CDS-F-serratus_M_contig1261:128652..1288041690962745.729748-CDS-F-serratus_M_contig1261:128652..128804Fucus serratus maleCDSF-serratus_M_contig1261 128653..128804 +
1622929196.8939958-CDS-F-serratus_M_contig1261:129131..1292451622929196.8939958-CDS-F-serratus_M_contig1261:129131..129245Fucus serratus maleCDSF-serratus_M_contig1261 129132..129245 +
1690962745.7377672-CDS-F-serratus_M_contig1261:129131..1292451690962745.7377672-CDS-F-serratus_M_contig1261:129131..129245Fucus serratus maleCDSF-serratus_M_contig1261 129132..129245 +
1622929196.9061012-CDS-F-serratus_M_contig1261:129525..1297771622929196.9061012-CDS-F-serratus_M_contig1261:129525..129777Fucus serratus maleCDSF-serratus_M_contig1261 129526..129777 +
1690962745.7482026-CDS-F-serratus_M_contig1261:129525..1297771690962745.7482026-CDS-F-serratus_M_contig1261:129525..129777Fucus serratus maleCDSF-serratus_M_contig1261 129526..129777 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1261.1976.1

>prot_F-serratus_M_contig1261.1976.1 ID=prot_F-serratus_M_contig1261.1976.1|Name=mRNA_F-serratus_M_contig1261.1976.1|organism=Fucus serratus male|type=polypeptide|length=232bp
MVSKTVASAISLVAGFLNGPGSSFGSEIAICKPALQKACESAYLSCRLSV
PVDDQQNICGCAALYYGTCLPAAGCTGNEEMTSCIGELVEWNCPDMSVCG
NDCTLEDGDPRLPAGTVVLPLNNFGANYLQLSVCSNGMDTAKLLHFGQVS
MSSCDSQDFRVCHLWVAPRTFTAVAFPPQVTQLQVEQCVRLEGAETDIWS
DNWECLSEPLPAKYYGSTAYYFDGSGGSIYDS
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mRNA from alignment at F-serratus_M_contig1261:125113..129777+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1261.1976.1 ID=mRNA_F-serratus_M_contig1261.1976.1|Name=mRNA_F-serratus_M_contig1261.1976.1|organism=Fucus serratus male|type=mRNA|length=4665bp|location=Sequence derived from alignment at F-serratus_M_contig1261:125113..129777+ (Fucus serratus male)
ATGGTGTCGAAAACTGTGGCAAGTGCAATCTCCCTTGTCGCTGGCTTTCT
AAATGGTCCGGGGAGTAGCTTCGGGTCTGAAATCGCCATGTGAGCGTTTA
CTCTCTTCGATGATCTGATCGTGTTCGGACCTTTTGTTCCCTTTTGGATA
AGAAATACCGTACCAGTAACATTTATCGGAAATCAGACTACAACAGAGAA
ATCCGAGTACATACTTGTACGAAGTACGTATCGAAGTCGGGTGCATTCAC
GTCAAAAATTACTCAGTAACATACCCAGATACTAACAGTACACCTCCTTG
AGTTCTGCATCATCCATTCCCTGTGTCAGACAGCAACGTTGCGTCACGAC
GAATGAGATCGCAAGTCGAATTACTACTTTTGCCCGGGCCAACGCGGCCG
AGTATCATCACGTAAAAGGTTATTGTTGCACTTTTTCTGTTTACAACTGC
CTAACAAAGGAAACAAACCAGCTTAAATACTATCTAGAGCCAAGTAGCTT
CGAGAGCTGAGCCAGGGGAGAATCATAAATCGCAATTCTCGATAGGGTTT
CTTATCCCGTTATTCTCTTCGGTAGTGTCATACTATACACATGGTGTAGC
CACCTATATTTAGTCTTTCTTTGACGAGTACCATGGACCTCTGACGGGTA
TCCTGCTCTATTTTGGGTGGTATTTCGCCTCTGTGACTCCTCTTTATGCT
GCACTATTAATAATACGTCCTTCATAGCATATTTCCAAAACTCTCGGCCC
TTCCCTCTGGTGAGGGTGTATTACTACACTAGTGTTCTTGGTACCAAGGC
TACCCTAACATGCTATGGGACAAGAGCAAGGCTGTCCCTGAGAGCAATGG
CCCACTTCCCAAGTCAGCCTAGAGCAGGACGCTCGGCAGGCACGTCTTCC
CATGGAAGCAGACGTGCCAGCAGACAAGAAGACTCGCGAGCGCCCGGAGG
GCACCGCTACTGCAGTTCGAGCAAAGCATGGGGATAGCTGTTCTGCAAAA
AGGGTCCAAGCCGGCTCGACCTGCTCGACCAGTTTAAGGTTGAAAGCTTA
ACCTCCCGCTCTCTCTTGTAGGGGTTACGTCTTGGTCGAGAACGGTGCTG
CGGCGCTGAAGTCATACCTCTCACCCTTGAAGATGCGCCTATCAACAGCC
GCGGGTGGCTTACTACCCGTAAGCACGATCTCTACAGTGATAAGGACCAC
CTTCGGCCAGATTTGTTTTGGTTTTGCTCGGCCAAAGAGAAAAGTTCAAG
TACATTAGTTCTATACGCCTCGTACTACGGCATTTTGGGGGGGATAAACA
ACCAGCAAACCCTCTTCTGGCCGAAGCTCATTAAAACCACATCGGGGCAA
AATCTGGTGTTTGATCCCGGCGGGTCCGCAGGTCGTCTCCACCGAACCTC
GGTACATGACCTTCGAAGCCCAAATGTACATACCAAGTTTTACGATACGT
GACTATGCACTCTTACGTTTGGAACATGTGGTTGCACCACAGCTGGTTGC
GGCGATTGTCACATACTGATACCAAAATTGTACTTTCTGAGGCAAAACAC
TCCCGTATTCACTCCATTACAGTACCCGAGTTTGGATTATTGGATAACAG
TCCCGTATTTTTTAGAAAAATATGAGCTAATCGTTTGTTTGAAAAAAACG
CGTGGGGCCCCGTTAAGCTTTAGGGTATATCAACTCCGTAGCGTAAGAGC
GTTTTTTTCATCTTGTAGGGATCAAGTTGGATTGATATCTGACCGTCTTT
TTTTCTCTGACATCCTGATAGGTTTTACTGTCTCGTATAATACATGGGAG
GGTATCACAATATATAGTTTATACTGAGCCAGGGGAAAAACATAATTTAT
GATTCTCGATGGGGTTTGTTATCCCGTTATACACTTCTGTAGGGTCATAC
TATACATACATGTGGTGTAGCCTCTTGTTGGTAGTCAGTCTGTCTTTGGC
GAGTACCCTGGGTCTCTGACGAGTACCTTGCTCTATTCTGGGTAGTATTT
TGCCTCTGCGTCTCCCCTGATGCTGATGATTGACAATACGTTTTTTATAG
CATCCTCCCAATACTCTCAGCCCTTCCCTCTGGCGAGGGTGTATTAACAC
CCTCCTGTTACCGGGTACTTGTACGCAATGGAGTAGTAGTGTATGAGTGG
AAGTGTATACATTCATTTCTGAGGTAAAGGATGAATGAGTGCACCATAGC
ATCTGCGATAATTTCAACACGCCCACTTCATTCCAATAAGGGGTGTGGGA
AAGAGAGGCGCACATTAATTGGTCATAGTCCGTGGTGACCTGCAAAGGCA
GCATTCATTCATTGCTGGGACTACCTTGAGGACTACTGGCCCTGCGCCGG
CGGACTCTCGGCAGTGAACGCCATCGGTACGCAACTGTGTGACTCGATAA
ACTCGGGACTGACCCGATGGTGTAGGGCGGAAAAACTAGATGGACGCCGT
CGTGGAAGCTGGGAGGAATTCCGCGAGTAAGCACCAAATTCAGCCTAATT
ATGGAGAATGAGCAGGCTGACGCGGGACGGGACGGCCAAACCCGTTTCGA
GAAACCAAATTCCGAGGCGCGAACGGGGACGACAGGGAACGCTCATTTTT
CCTGTTCAGCTGACTACGAGCACGATTGGCAACTTTACCCGATTGATCCA
CTCTCTGCTACACGCTATGACCGTACATGGTTGCAGCGCACGAGTTTGTT
CTTTGAAACTGTAAAAACACGAGAAAAGTGTCTAATGAGTACAAGGTAGT
AGTAAGTGGATTTGGGTGTAAATGGCTATCTATCTAGCTATGTGAATAAT
GGTGATGTTTTGGAATATTTTTCTTAAACGTTTTTCAAACAAATTGAAAC
CACAGACAAATCGAAAGGGCCAAAAGTGGCGTTTGACTCGGCGATACAAA
ACCTGACCCTCACCAACAGTAGATATTTTTCTGGCCGAATGCAGATGCAA
ACCTGCTCTCCAGAAGGCATGCGAATCAGCATATCTAAGTTGCAGGCTGT
CGGTACCAGTGGACGACCAGCAAAATATTTGCGGTGAGATTGTACAAACA
TATAATACTGATTGGCCTTCCTTCAGACGAGATGAAGCTTCAAACATGTT
TAGTCTATAATTTACTGTATAATATATAAAATATCAGATAGAGGGGAGGG
GCGGGGATACATCCGCGCTTGGAGACCTTTTTTCTTGTCGAGACAAATTG
TTTTCATTTGGAAAAGTCACGGAAGTTCACTGGAGTCACGGAAATGTCGG
AAAACTGGAGTAGAGTAGGGTGGAGTACAGTGCGCAGCCGAAGGTTTTGG
CGCTGGTAACGTCCCAACACACAGCCCTGCGTTGAACTTGAATTCGCCAA
GGGTCAGATTCTCCACAAGAGGGTACCTGGTATAAAAAAATACCAGATGT
AAAATCTTGGGGCGCCGCTGGAGATCATCGATACGCAGCATCGGTAGGAG
CCTCATTGTGCCTATTTTTTTCTCGAACAGCACCAAAACACATTATTCCT
CCTCGTTTGCCACATTTTCTCCTTACCGCACCTGCTGTAGGTTGTGCTGC
GCTATACTACGGCACTTGCCTTCCAGCCGCGGGCTGCACAGGGAATGAGG
AAATGACGTCCTGCATCGGAGAGCTAGTAGAGTGGAACTGTCCAGATATG
AGCGTCTGCGGGAACGACTGCACGCTAGAGGATGGGGACCCGGTGACGTG
ATCAACCACCACCATTCCACCATCAGTTGTCCAAGCACCCAGAGCATAGA
GCCTAGAAAATTCATCGATTTTACATACTACATAGAGATGTTCATAGGCC
GTCGAAGCATGCAGAGTTTTTTTCTTGCCTTCGAGAATCAAGCGTCACGG
TTAACAGTCTGTGTCGCGGACCCGTACAAATGCCCAACGCGCACAAGGGT
CGGGGTCGCAGCACCCGCTCCACACGGGTCCTTTAAGGTTATTTTACTGA
GCCGTGCGTCGGCAAATTGATGCGCACGAGTTTGTGTTTGAACGGCGTTA
TTTTTCGTCGAAAGGATAGCGGCTTCCGGCGGGAACCGTCGTCTTGCCGT
TGAACAACTTCGGTGCCAACTATCTTCAGCTGAGCGTGTGCTCCAACGGG
ATGGACACCGCCAAGCTTCTTCACTTTGGTCAGGTCGGTTTGCCTTGGCT
TCACTCGGTGGACAAGGTTGGTTTGCAACTAAGAAAAAAAAAAAGAAGTT
TCGGCTTTACGTTTCCACATACTGAATGTATGTGCAGATGTGTGGCGACA
CGTCTGATCTCGGTTGTCATACCAATCCAAGCTGCCCACAGCGCGACATC
GGGCACTGTACGCGGCCTCCTTTCCTACGCAAGGCCAGCCGCGCATAATC
TCCTCCGAATAATCTTCCATCATCACCTCACGCATTATGGACGAATGCCG
GGTTCACGCCCAGGTAAGCATGAGCAGCTGCGACTCCCAAGATTTCCGCG
TGTGCCATCTTTGGGTTGCCCCGCGAACCTTCACGGCCGTGGCCTTCCCA
CCACAAGTGACCCAGCTCCAGGTGGAGCAGTGCGTACGCCTGGAGGGCGC
AGAAACCGACATCTGGAGCGATAATTGGGAATGTCTGAGTGAACCCCTTC
CGGCAAAATACTACGGGAGCACGGCTTATTATTTTGATGGGTCTGGCGGA
AGCATCTACGACAGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1261:125113..129777+

>mRNA_F-serratus_M_contig1261.1976.1 ID=mRNA_F-serratus_M_contig1261.1976.1|Name=mRNA_F-serratus_M_contig1261.1976.1|organism=Fucus serratus male|type=CDS|length=1392bp|location=Sequence derived from alignment at F-serratus_M_contig1261:125113..129777+ (Fucus serratus male)
ATGGTGTCGAAAACTGTGGCAAGTGCAATCTCCCTTGTCGCTGGCTTTCT
AAATGGTCCGGGGAGTAGCTTCGGGTCTGAAATCGCCATATGGTGTCGAA
AACTGTGGCAAGTGCAATCTCCCTTGTCGCTGGCTTTCTAAATGGTCCGG
GGAGTAGCTTCGGGTCTGAAATCGCCATATGCAAACCTGCTCTCCAGAAG
GCATGCGAATCAGCATATCTAAGTTGCAGGCTGTCGGTACCAGTGGACGA
CCAGCAAAATATTTGCGATGCAAACCTGCTCTCCAGAAGGCATGCGAATC
AGCATATCTAAGTTGCAGGCTGTCGGTACCAGTGGACGACCAGCAAAATA
TTTGCGGTTGTGCTGCGCTATACTACGGCACTTGCCTTCCAGCCGCGGGC
TGCACAGGGAATGAGGAAATGACGTCCTGCATCGGAGAGCTAGTAGAGTG
GAACTGTCCAGATATGAGCGTCTGCGGGAACGACTGCACGCTAGAGGATG
GGGACCCGGTTGTGCTGCGCTATACTACGGCACTTGCCTTCCAGCCGCGG
GCTGCACAGGGAATGAGGAAATGACGTCCTGCATCGGAGAGCTAGTAGAG
TGGAACTGTCCAGATATGAGCGTCTGCGGGAACGACTGCACGCTAGAGGA
TGGGGACCCGCGGCTTCCGGCGGGAACCGTCGTCTTGCCGTTGAACAACT
TCGGTGCCAACTATCTTCAGCTGAGCGTGTGCTCCAACGGGATGGACACC
GCCAAGCTTCTTCACTTTGGTCAGCGGCTTCCGGCGGGAACCGTCGTCTT
GCCGTTGAACAACTTCGGTGCCAACTATCTTCAGCTGAGCGTGTGCTCCA
ACGGGATGGACACCGCCAAGCTTCTTCACTTTGGTCAGGTAAGCATGAGC
AGCTGCGACTCCCAAGATTTCCGCGTGTGCCATCTTTGGGTTGCCCCGCG
AACCTTCACGGCCGTGGCCTTCCCACCACAAGTGACCCAGCTCCAGGTGG
AGCAGTGCGTACGCCTGGAGGGCGCAGAAACCGACATCTGGAGCGATAAT
TGGGAATGTCTGAGTGAACCCCTTCCGGCAAAATACTACGGGAGCACGGC
TTATTATTTTGATGGGTCTGGCGGAAGCATCTACGACAGCGTAAGCATGA
GCAGCTGCGACTCCCAAGATTTCCGCGTGTGCCATCTTTGGGTTGCCCCG
CGAACCTTCACGGCCGTGGCCTTCCCACCACAAGTGACCCAGCTCCAGGT
GGAGCAGTGCGTACGCCTGGAGGGCGCAGAAACCGACATCTGGAGCGATA
ATTGGGAATGTCTGAGTGAACCCCTTCCGGCAAAATACTACGGGAGCACG
GCTTATTATTTTGATGGGTCTGGCGGAAGCATCTACGACAGC
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