mRNA_F-serratus_M_contig1261.1970.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1261.1970.1
Unique NamemRNA_F-serratus_M_contig1261.1970.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1261.1970.1 vs. uniprot
Match: A0A6H5KVV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV7_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 7.150e-10
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = -1 
Query:   25 SRRPIHAALVSGGIKLRPRETKALLRALDVSPHRFVRLGLVDGKALR 165
            S+ P+HAALV+ GI LRPRET+ LLRAL V PHR V+LGLV  + LR
Sbjct:  139 SKHPVHAALVAAGITLRPRETRPLLRALGVGPHRLVKLGLVQREELR 185
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BLAST of mRNA_F-serratus_M_contig1261.1970.1 vs. uniprot
Match: D8LN66_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN66_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 4.600e-9
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = -1 
Query:   19 EEPNPILKPESRRP-IHAALVSGGIKLRPRETKALLRALDVSPHRFVRLGLVDGKALRAV 195
            EE N  + PE ++  IH A ++GGI+LRPRE + LL ALDV P R  +LGLVDGK LRA+
Sbjct:  237 EEKNDAVAPEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAM 296
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BLAST of mRNA_F-serratus_M_contig1261.1970.1 vs. uniprot
Match: A0A6H5JQ17_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ17_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 6.450e-9
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = -1 
Query:   19 EEPNPILKPESRRP-IHAALVSGGIKLRPRETKALLRALDVSPHRFVRLGLVDGKALRAV 195
            EE N    PE+++  IH A ++GGI+LRPRE + LL ALDV P R  +LGLVDGK LRA+
Sbjct:  249 EEENNDAAPETKKDLIHKAFITGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAM 308
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BLAST of mRNA_F-serratus_M_contig1261.1970.1 vs. uniprot
Match: A0A6H5KAY7_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY7_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.600e-8
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = -1 
Query:   19 IHAALVSGGIKLRPRETKALLRALDVSPHRFVRLGLVDGKALRAV 153
            IH A ++GGI+LRPRE + LL ALDV P R  +LGLVDGK LRA+
Sbjct:  263 IHKAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVDGKDLRAM 307
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BLAST of mRNA_F-serratus_M_contig1261.1970.1 vs. uniprot
Match: A0A6H5L2C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C8_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.770e-8
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = -1 
Query:   25 SRRPIHAALVSGGIKLRPRETKALLRALDVSPHRFVRLGLVDGKALR 165
            S+ PIHA  V+ G++LRPRET+ LLRAL V PHR V+LGLV  +  R
Sbjct:  100 SKHPIHAVFVAAGVQLRPRETRPLLRALGVGPHRLVKLGLVQREEAR 146
[Close]
BLAST of mRNA_F-serratus_M_contig1261.1970.1 vs. uniprot
Match: D8LN68_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN68_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 2.230e-8
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = -1 
Query:   19 EEPNPILKPESRRP-IHAALVSGGIKLRPRETKALLRALDVSPHRFVRLGLVDGKALRAV 195
            EE N  + PE ++  IH A ++GGI+LRPRE + LL ALDV P R  +LGLV+GK LRA+
Sbjct:  221 EEKNDAVAPEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDLRAM 280
[Close]
BLAST of mRNA_F-serratus_M_contig1261.1970.1 vs. uniprot
Match: A0A6H5KB69_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB69_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 4.190e-8
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = -1 
Query:   19 EEPNPILKPESRRP-IHAALVSGGIKLRPRETKALLRALDVSPHRFVRLGLVDGKALRAV 195
            EE N    PE ++  IH A ++GGI+LRPRE + LL ALDV P R  +LGLV+GK LRA+
Sbjct:  231 EEENDDAAPEVKKNLIHTAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVNGKYLRAM 290
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1261.1970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KVV7_9PHAE7.150e-1065.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN66_ECTSI4.600e-956.67PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JQ17_9PHAE6.450e-956.67PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KAY7_9PHAE1.600e-864.44PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L2C8_9PHAE1.770e-859.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN68_ECTSI2.230e-855.00PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KB69_9PHAE4.190e-855.00PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1261contigF-serratus_M_contig1261:43..372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size331
Cds size330
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929196.1455197-CDS-F-serratus_M_contig1261:42..3721622929196.1455197-CDS-F-serratus_M_contig1261:42..372Fucus serratus maleCDSF-serratus_M_contig1261 43..372 +
1690962745.3017216-CDS-F-serratus_M_contig1261:42..3721690962745.3017216-CDS-F-serratus_M_contig1261:42..372Fucus serratus maleCDSF-serratus_M_contig1261 43..372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1261.1970.1prot_F-serratus_M_contig1261.1970.1Fucus serratus malepolypeptideF-serratus_M_contig1261 43..372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1261.1970.1

>prot_F-serratus_M_contig1261.1970.1 ID=prot_F-serratus_M_contig1261.1970.1|Name=mRNA_F-serratus_M_contig1261.1970.1|organism=Fucus serratus male|type=polypeptide|length=110bp
MASNAVHGAKGLAVHEPEPYEAVGAHIESAKQGLRLAGTQFDTTAHQSRV
NGAPRLRLQNRVRFLLHLVVLFEGVIIAVSRGVLLFSLICLHLLRLRRVV
VDVISKHPAL
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mRNA from alignment at F-serratus_M_contig1261:43..372+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1261.1970.1 ID=mRNA_F-serratus_M_contig1261.1970.1|Name=mRNA_F-serratus_M_contig1261.1970.1|organism=Fucus serratus male|type=mRNA|length=330bp|location=Sequence derived from alignment at F-serratus_M_contig1261:43..372+ (Fucus serratus male)
ATGGCCTCCAATGCCGTCCACGGCGCGAAGGGCCTTGCCGTCCACGAGCC
CGAGCCTTACGAAGCGGTGGGGGCTCACATCGAGAGCGCGAAGCAGGGCC
TTCGTCTCGCGGGGACGCAGTTTGATACCACCGCTCACCAGAGCCGCGTG
AATGGGGCGCCGCGACTCCGGCTTCAGAATCGGGTTCGGTTCCTCCTGCA
TCTCGTCGTCCTTTTCGAGGGTGTCATTATTGCCGTCTCCCGAGGTGTCC
TCCTTTTCTCGCTCATCTGCCTCCACCTGCTCCGCCTCCGACGTGTCGTT
GTTGATGTCATCTCCAAACATCCCGCTCTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1261:43..372+

>mRNA_F-serratus_M_contig1261.1970.1 ID=mRNA_F-serratus_M_contig1261.1970.1|Name=mRNA_F-serratus_M_contig1261.1970.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig1261:43..372+ (Fucus serratus male)
ATGGCCTCCAATGCCGTCCACGGCGCGAAGGGCCTTGCCGTCCACGAGCC
CGAGCCTTACGAAGCGGTGGGGGCTCACATCGAGAGCGCGAAGCAGGGCC
TTCGTCTCGCGGGGACGCAGTTTGATACCACCGCTCACCAGAGCCGCGTG
AATGGGGCGCCGCGACTCCGGCTTCAGAATCGGGTTCGGTTCCTCCTGCA
TCTCGTCGTCCTTTTCGAGGGTGTCATTATTGCCGTCTCCCGAGGTGTCC
TCCTTTTCTCGCTCATCTGCCTCCACCTGCTCCGCCTCCGACGTGTCGTT
GTTGATGTCATCTCCAAACATCCCGCTCTCATGGCCTCCAATGCCGTCCA
CGGCGCGAAGGGCCTTGCCGTCCACGAGCCCGAGCCTTACGAAGCGGTGG
GGGCTCACATCGAGAGCGCGAAGCAGGGCCTTCGTCTCGCGGGGACGCAG
TTTGATACCACCGCTCACCAGAGCCGCGTGAATGGGGCGCCGCGACTCCG
GCTTCAGAATCGGGTTCGGTTCCTCCTGCATCTCGTCGTCCTTTTCGAGG
GTGTCATTATTGCCGTCTCCCGAGGTGTCCTCCTTTTCTCGCTCATCTGC
CTCCACCTGCTCCGCCTCCGACGTGTCGTTGTTGATGTCATCTCCAAACA
TCCCGCTCTC
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